Wall clock time and date at job start Tue Mar 31 2020 20:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47218 * 2 1 4 4 C 1.53000 * 109.46868 * 120.00210 * 2 1 3 5 5 N 1.46503 * 109.47199 * 174.99871 * 4 2 1 6 6 C 1.46497 * 119.99742 * 269.99935 * 5 4 2 7 7 C 1.36936 * 119.99869 * 89.99723 * 5 4 2 8 8 H 1.08001 * 120.00120 * 20.38398 * 7 5 4 9 9 C 1.38807 * 119.99999 * 200.38031 * 7 5 4 10 10 N 1.31623 * 120.00082 * 15.00532 * 9 7 5 11 11 Si 1.86797 * 120.00278 * 195.00352 * 9 7 5 12 12 H 1.48508 * 109.47040 * 85.00455 * 11 9 7 13 13 H 1.48503 * 109.47610 * 205.00254 * 11 9 7 14 14 H 1.48503 * 109.47158 * 325.00880 * 11 9 7 15 15 N 1.46498 * 109.47126 * 240.00094 * 2 1 3 16 16 C 1.34771 * 120.00664 * 85.00335 * 15 2 1 17 17 O 1.21284 * 119.99669 * 359.97438 * 16 15 2 18 18 C 1.50698 * 120.00696 * 180.02562 * 16 15 2 19 19 O 1.42898 * 109.47321 * 180.02562 * 18 16 15 20 20 C 1.42902 * 113.99817 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.46885 * 179.97438 * 20 19 18 22 22 C 1.50696 * 109.47022 * 180.02562 * 21 20 19 23 23 C 1.38272 * 119.98821 * 269.72514 * 22 21 20 24 24 C 1.38223 * 120.05288 * 179.72670 * 23 22 21 25 25 C 1.38227 * 120.02467 * 0.54897 * 24 23 22 26 26 C 1.38434 * 119.97090 * 359.72673 * 25 24 23 27 27 F 1.35103 * 120.02289 * 180.02562 * 26 25 24 28 28 C 1.38185 * 119.99026 * 90.00210 * 22 21 20 29 29 H 1.09002 * 109.46485 * 59.99686 * 1 2 3 30 30 H 1.08992 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47243 * 300.00244 * 1 2 3 32 32 H 1.09001 * 109.47005 * 294.99812 * 4 2 1 33 33 H 1.08998 * 109.47272 * 54.99538 * 4 2 1 34 34 H 1.09003 * 109.47243 * 95.12914 * 6 5 4 35 35 H 1.09004 * 109.46817 * 215.12497 * 6 5 4 36 36 H 1.08990 * 109.47151 * 335.12522 * 6 5 4 37 37 H 0.96996 * 120.00167 * 179.97438 * 10 9 7 38 38 H 0.97011 * 119.99957 * 265.00288 * 15 2 1 39 39 H 1.08999 * 109.46991 * 59.99749 * 18 16 15 40 40 H 1.09005 * 109.46830 * 299.99645 * 18 16 15 41 41 H 1.08990 * 109.47107 * 299.99591 * 20 19 18 42 42 H 1.08999 * 109.47171 * 60.00204 * 20 19 18 43 43 H 1.09007 * 109.47125 * 299.99874 * 21 20 19 44 44 H 1.09003 * 109.47226 * 59.99677 * 21 20 19 45 45 H 1.07998 * 119.97114 * 359.97438 * 23 22 21 46 46 H 1.07993 * 119.98824 * 180.27457 * 24 23 22 47 47 H 1.07999 * 120.00955 * 179.74771 * 25 24 23 48 48 H 1.07998 * 120.00570 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5613 7 6 4.2798 0.1647 1.7241 8 1 3.8671 0.8400 2.4589 9 6 5.6009 0.3014 1.3205 10 7 6.0234 -0.3086 0.2334 11 14 6.7791 1.3512 2.3200 12 1 7.3498 0.5394 3.4249 13 1 7.8760 1.8353 1.4439 14 1 6.0481 2.5133 2.8862 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3571 17 8 1.8584 1.1583 -2.4117 18 6 2.6490 -0.7289 -3.5877 19 8 2.6978 0.1895 -4.6814 20 6 3.1635 -0.3863 -5.9035 21 6 3.1738 0.6816 -6.9991 22 6 3.6643 0.0742 -8.2881 23 6 5.0136 0.0895 -8.5898 24 6 5.4656 -0.4723 -9.7691 25 6 4.5677 -1.0400 -10.6535 26 6 3.2159 -1.0508 -10.3551 27 9 2.3375 -1.6058 -11.2185 28 6 2.7648 -0.4927 -9.1707 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7516 -0.1584 2.1370 33 1 1.6053 -1.7198 1.2952 34 1 4.3628 -1.7608 -0.4772 35 1 5.0416 -2.2454 1.0953 36 1 3.4384 -2.8372 0.5975 37 1 6.9464 -0.2128 -0.0489 38 1 2.2490 -1.6319 -1.1526 39 1 1.9760 -1.5506 -3.8326 40 1 3.6481 -1.1214 -3.3986 41 1 4.1731 -0.7718 -5.7620 42 1 2.5013 -1.2009 -6.1969 43 1 2.1639 1.0668 -7.1406 44 1 3.8356 1.4965 -6.7060 45 1 5.7153 0.5372 -7.9016 46 1 6.5201 -0.4637 -10.0016 47 1 4.9207 -1.4752 -11.5767 48 1 1.7105 -0.5009 -8.9367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322170175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:57 Heat of formation + Delta-G solvation = -103.965900 kcal Electronic energy + Delta-G solvation = -28653.856588 eV Core-core repulsion = 24430.237203 eV Total energy + Delta-G solvation = -4223.619385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.91806 -40.83136 -40.23398 -38.77146 -37.84545 -35.72191 -34.45552 -33.16921 -32.03702 -31.55007 -30.08321 -28.16350 -27.91478 -27.37421 -24.64396 -23.68890 -23.60907 -22.24552 -21.95937 -21.33067 -18.78042 -18.39713 -18.21767 -17.67513 -17.56250 -17.11980 -17.08956 -16.81567 -16.66514 -16.55790 -15.85664 -15.54145 -15.36188 -15.08156 -14.91947 -14.57748 -14.41310 -14.17027 -14.10310 -13.76126 -13.71818 -13.34717 -13.18757 -13.07377 -12.81993 -12.73326 -12.64898 -12.54061 -12.29641 -12.28211 -12.22652 -12.01839 -11.97278 -11.81031 -11.69308 -10.74329 -10.70548 -10.59561 -9.96317 -9.90901 -9.67527 -8.73445 -7.81007 -5.23300 0.13103 0.20990 1.45387 1.46287 1.53331 1.70847 1.98137 2.52257 2.57270 3.01068 3.27681 3.32596 3.71836 3.75658 3.81211 3.84843 4.06762 4.12730 4.17670 4.22481 4.25013 4.28057 4.33313 4.39858 4.43816 4.43949 4.55921 4.77846 4.79114 4.85069 4.86581 4.93156 5.02639 5.04749 5.10289 5.14194 5.21699 5.35060 5.39223 5.41101 5.53350 5.66568 5.72127 5.81182 5.91514 6.07196 6.35374 6.71499 7.19787 7.40397 7.92650 8.31517 9.21564 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.002185 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.948516 B =12811.592131 C =14174.995383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.123 3.877 3 H 0.033 0.967 4 C 0.143 3.857 5 N -0.612 5.612 6 C 0.172 3.828 7 C -0.258 4.258 8 H 0.066 0.934 9 C -0.051 4.051 10 N -0.928 5.928 11 Si 0.958 3.042 12 H -0.283 1.283 13 H -0.300 1.300 14 H -0.277 1.277 15 N -0.691 5.691 16 C 0.507 3.493 17 O -0.586 6.586 18 C 0.053 3.947 19 O -0.394 6.394 20 C 0.064 3.936 21 C -0.076 4.076 22 C -0.056 4.056 23 C -0.129 4.129 24 C -0.086 4.086 25 C -0.158 4.158 26 C 0.079 3.921 27 F -0.150 7.150 28 C -0.156 4.156 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.040 0.960 37 H 0.244 0.756 38 H 0.406 0.594 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.142 0.858 46 H 0.160 0.840 47 H 0.153 0.847 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 -6.948 -18.148 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.052 0.948 4 C 0.016 3.984 5 N -0.335 5.335 6 C 0.028 3.972 7 C -0.389 4.389 8 H 0.084 0.916 9 C -0.247 4.247 10 N -0.575 5.575 11 Si 0.788 3.212 12 H -0.210 1.210 13 H -0.226 1.226 14 H -0.202 1.202 15 N -0.342 5.342 16 C 0.294 3.706 17 O -0.466 6.466 18 C -0.026 4.026 19 O -0.313 6.313 20 C -0.012 4.012 21 C -0.114 4.114 22 C -0.056 4.056 23 C -0.147 4.147 24 C -0.104 4.104 25 C -0.176 4.176 26 C 0.060 3.940 27 F -0.128 7.128 28 C -0.174 4.174 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.031 0.969 35 H 0.030 0.970 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.242 0.758 39 H 0.131 0.869 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.159 0.841 46 H 0.178 0.822 47 H 0.170 0.830 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.343 -5.966 -18.237 20.210 hybrid contribution 0.999 0.173 0.245 1.043 sum -5.344 -5.793 -17.992 19.643 Atomic orbital electron populations 1.22017 0.93623 1.02977 1.01814 1.21684 0.94084 0.96351 0.86340 0.94839 1.21373 0.83167 0.99411 0.94440 1.44138 1.00920 1.20463 1.67930 1.20661 0.94392 0.86112 0.96082 1.19456 0.93440 1.09766 1.16217 0.91628 1.25584 1.00148 1.01257 0.97693 1.70191 1.15550 1.48418 1.23352 0.85416 0.78923 0.78830 0.78059 1.21006 1.22645 1.20210 1.45644 1.65907 1.14099 1.08565 1.20770 0.77222 0.87017 0.85607 1.90638 1.52025 1.17995 1.85925 1.22219 1.02811 0.92315 0.85258 1.87941 1.87562 1.37069 1.18740 1.22644 0.99404 0.96165 0.83007 1.20419 1.03345 0.97695 0.89915 1.19527 0.93633 0.97477 0.94986 1.21474 0.95033 1.00083 0.98145 1.21347 1.01071 0.95318 0.92629 1.21455 0.90963 1.02729 1.02499 1.17919 0.87890 0.98944 0.89264 1.91480 1.68964 1.83407 1.68988 1.21178 1.01589 1.01059 0.93622 0.94390 0.90237 0.90545 0.91859 0.90206 0.96855 0.97028 0.94167 0.94664 0.75756 0.86854 0.89547 0.92258 0.91327 0.89782 0.89994 0.84052 0.82202 0.82975 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.48 71.98 0.68 -3.38 16 2 C 0.12 4.48 2.88 44.99 0.13 4.61 16 3 H 0.03 1.57 7.58 -2.38 -0.02 1.55 16 4 C 0.14 5.12 5.33 86.38 0.46 5.58 16 5 N -0.61 -28.31 2.78 -726.95 -2.02 -30.34 16 6 C 0.17 7.55 7.60 127.77 0.97 8.52 16 7 C -0.26 -13.89 9.68 84.03 0.81 -13.08 16 8 H 0.07 3.50 7.86 -2.91 -0.02 3.47 16 9 C -0.05 -2.86 5.06 84.86 0.43 -2.43 16 10 N -0.93 -53.51 10.67 21.65 0.23 -53.28 16 11 Si 0.96 45.69 29.58 68.60 2.03 47.72 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 15 N -0.69 -24.02 4.42 -442.53 -1.96 -25.97 16 16 C 0.51 19.60 7.87 87.66 0.69 20.29 16 17 O -0.59 -28.43 16.16 16.00 0.26 -28.17 16 18 C 0.05 1.56 6.42 71.24 0.46 2.02 16 19 O -0.39 -12.55 9.88 -129.94 -1.28 -13.83 16 20 C 0.06 1.42 5.92 71.98 0.43 1.84 16 21 C -0.08 -1.53 5.71 29.85 0.17 -1.36 16 22 C -0.06 -0.99 5.13 -19.87 -0.10 -1.09 16 23 C -0.13 -2.00 9.70 22.27 0.22 -1.78 16 24 C -0.09 -1.10 10.04 22.26 0.22 -0.88 16 25 C -0.16 -2.26 10.03 22.31 0.22 -2.04 16 26 C 0.08 1.42 7.30 22.37 0.16 1.59 16 27 F -0.15 -3.00 17.27 44.97 0.78 -2.22 16 28 C -0.16 -2.77 9.68 22.31 0.22 -2.55 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.23 8.03 -2.39 -0.02 2.21 16 33 H 0.08 2.30 7.86 -2.39 -0.02 2.28 16 34 H 0.01 0.62 6.97 -2.39 -0.02 0.61 16 35 H 0.01 0.55 7.22 -2.38 -0.02 0.53 16 36 H 0.04 1.38 7.83 -2.39 -0.02 1.36 16 37 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 38 H 0.41 12.04 7.18 -92.70 -0.67 11.37 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 41 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.68 8.08 -2.38 -0.02 1.66 16 44 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 45 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 46 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 47 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -74.51 404.15 4.49 -70.02 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.28 Total: 20.21 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 6.17 Total: 15.86 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -3.75 Total: -109.59 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -1.02 Total: -42.00 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.51 4.49 -70.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322170175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.946 kcal (2) G-P(sol) polarization free energy of solvation -74.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds