Wall clock time and date at job start Tue Mar 31 2020 20:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46922 * 2 1 4 4 C 1.53000 * 109.47284 * 120.00498 * 2 1 3 5 5 C 1.50700 * 109.46756 * 294.99909 * 4 2 1 6 6 O 1.21283 * 120.00485 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99799 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00254 * 359.97438 * 7 5 4 9 9 C 1.52998 * 109.46919 * 89.99783 * 8 7 5 10 10 O 1.42902 * 109.47101 * 65.00679 * 9 8 7 11 11 C 1.46502 * 120.00104 * 179.97438 * 7 5 4 12 12 C 1.52997 * 109.46944 * 90.00005 * 11 7 5 13 13 N 1.46502 * 109.47149 * 180.02562 * 12 11 7 14 14 C 1.36940 * 120.00324 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99704 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00150 * 179.97438 * 14 13 12 17 17 N 1.31625 * 120.00361 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99933 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47270 * 90.00170 * 18 16 14 20 20 H 1.48504 * 109.47193 * 210.00075 * 18 16 14 21 21 H 1.48499 * 109.47223 * 330.00136 * 18 16 14 22 22 C 1.50699 * 109.46577 * 240.00126 * 2 1 3 23 23 C 1.38264 * 119.99175 * 300.02021 * 22 2 1 24 24 C 1.38223 * 120.05372 * 179.97438 * 23 22 2 25 25 C 1.38223 * 120.02448 * 0.02779 * 24 23 22 26 26 C 1.38437 * 119.97390 * 359.69495 * 25 24 23 27 27 F 1.35099 * 120.02356 * 180.32333 * 26 25 24 28 28 C 1.38183 * 119.98467 * 120.00449 * 22 2 1 29 29 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46603 * 299.99435 * 1 2 3 31 31 H 1.08994 * 109.47161 * 59.99473 * 1 2 3 32 32 H 1.09001 * 109.47089 * 54.99298 * 4 2 1 33 33 H 1.08997 * 109.47124 * 174.99997 * 4 2 1 34 34 H 1.09001 * 109.47288 * 210.00007 * 8 7 5 35 35 H 1.09001 * 109.46928 * 330.00106 * 8 7 5 36 36 H 1.09007 * 109.47076 * 184.99951 * 9 8 7 37 37 H 1.09004 * 109.47522 * 305.00123 * 9 8 7 38 38 H 0.96707 * 113.99787 * 179.97438 * 10 9 8 39 39 H 1.08994 * 109.47614 * 209.99853 * 11 7 5 40 40 H 1.09007 * 109.46870 * 330.00275 * 11 7 5 41 41 H 1.09001 * 109.47392 * 299.99953 * 12 11 7 42 42 H 1.08994 * 109.47364 * 60.00322 * 12 11 7 43 43 H 0.97004 * 120.00295 * 359.97438 * 13 12 11 44 44 H 0.96995 * 119.99969 * 179.97438 * 17 16 14 45 45 H 1.08004 * 119.96758 * 359.97438 * 23 22 2 46 46 H 1.07999 * 119.98701 * 180.02562 * 24 23 22 47 47 H 1.08001 * 120.01081 * 180.02562 * 25 24 23 48 48 H 1.08002 * 120.01017 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.6414 0.0569 2.4765 6 8 1.0118 1.0873 2.3633 7 7 1.9854 -0.3916 3.7000 8 6 2.7465 -1.6359 3.8369 9 6 4.2439 -1.3233 3.8113 10 8 4.5872 -0.5423 4.9577 11 6 1.5984 0.3652 4.8932 12 6 0.2311 -0.1171 5.3818 13 7 -0.1563 0.6401 6.5746 14 6 -1.3508 0.3811 7.1921 15 1 -2.0075 -0.3811 6.7994 16 6 -1.7176 1.0982 8.3226 17 7 -0.9175 2.0275 8.8008 18 14 -3.3467 0.7445 9.1652 19 1 -3.1523 -0.3048 10.1979 20 1 -3.8509 1.9844 9.8084 21 1 -4.3321 0.2726 8.1595 22 6 2.0322 -0.7104 -1.2305 23 6 1.6977 -2.0340 -1.4494 24 6 2.1572 -2.6867 -2.5778 25 6 2.9523 -2.0168 -3.4887 26 6 3.2832 -0.6899 -3.2735 27 9 4.0549 -0.0323 -4.1664 28 6 2.8267 -0.0386 -2.1399 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6054 -1.7199 1.2951 33 1 3.1264 -0.7996 1.2055 34 1 2.4915 -2.1157 4.7818 35 1 2.5007 -2.3046 3.0119 36 1 4.8099 -2.2548 3.8236 37 1 4.4832 -0.7648 2.9062 38 1 5.5239 -0.3069 5.0072 39 1 2.3394 0.2112 5.6775 40 1 1.5433 1.4261 4.6486 41 1 -0.5101 0.0370 4.5975 42 1 0.2861 -1.1778 5.6264 43 1 0.4334 1.3250 6.9271 44 1 -1.1740 2.5289 9.5906 45 1 1.0768 -2.5582 -0.7379 46 1 1.8949 -3.7204 -2.7479 47 1 3.3108 -2.5269 -4.3705 48 1 3.0873 0.9955 -1.9691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326091080.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:24 Heat of formation + Delta-G solvation = -99.156540 kcal Electronic energy + Delta-G solvation = -29154.970424 eV Core-core repulsion = 24931.559588 eV Total energy + Delta-G solvation = -4223.410835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.20901 -40.39141 -39.38790 -37.29982 -35.81296 -34.98479 -34.27896 -31.59658 -31.11687 -30.07879 -29.45501 -28.49196 -26.77531 -24.24405 -23.43649 -23.16599 -23.05011 -21.54248 -20.51050 -18.82733 -17.98839 -17.50904 -17.13617 -16.93892 -16.51515 -16.45087 -16.15630 -15.91176 -15.30873 -14.95080 -14.61355 -14.44742 -14.15178 -13.99025 -13.71553 -13.52965 -13.38427 -13.26323 -13.07917 -12.96662 -12.63438 -12.46305 -12.41222 -12.25513 -11.94855 -11.58265 -11.37033 -11.20252 -11.06307 -10.98072 -10.88293 -10.82364 -10.57002 -10.20199 -10.06415 -9.71833 -9.53125 -9.32437 -9.00425 -8.81325 -8.44798 -6.86398 -5.70320 -2.99147 0.78873 0.83970 2.74192 3.04584 3.23433 3.47613 3.52347 3.54672 3.85642 4.05642 4.21597 4.36248 4.55356 4.66017 4.67651 4.72162 4.78713 4.83413 4.93676 4.96549 5.01680 5.11661 5.18162 5.32636 5.39928 5.47291 5.52448 5.59966 5.61918 5.69437 5.74175 5.81821 5.83853 5.94154 5.96805 5.99253 6.13708 6.23896 6.28602 6.35797 6.53334 6.63847 6.82810 7.00864 7.44663 7.60439 7.75022 8.33456 8.48403 9.58948 10.16637 10.51642 11.52648 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.002240 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.132217 B =12498.120950 C =13379.371594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.037 4.037 3 H 0.090 0.910 4 C -0.133 4.133 5 C 0.509 3.491 6 O -0.528 6.528 7 N -0.599 5.599 8 C 0.106 3.894 9 C 0.058 3.942 10 O -0.562 6.562 11 C 0.112 3.888 12 C 0.144 3.856 13 N -0.730 5.730 14 C -0.236 4.236 15 H 0.069 0.931 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.043 4.043 23 C -0.125 4.125 24 C -0.088 4.088 25 C -0.162 4.162 26 C 0.099 3.901 27 F -0.142 7.142 28 C -0.151 4.151 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.377 0.623 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.020 0.980 42 H 0.015 0.985 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.130 0.870 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.000 -11.971 -23.968 30.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.056 4.056 3 H 0.108 0.892 4 C -0.173 4.173 5 C 0.296 3.704 6 O -0.404 6.404 7 N -0.332 5.332 8 C -0.018 4.018 9 C -0.021 4.021 10 O -0.367 6.367 11 C -0.010 4.010 12 C 0.015 3.985 13 N -0.374 5.374 14 C -0.367 4.367 15 H 0.087 0.913 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.739 3.261 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.043 4.043 23 C -0.144 4.144 24 C -0.107 4.107 25 C -0.180 4.180 26 C 0.080 3.920 27 F -0.120 7.120 28 C -0.169 4.169 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.224 0.776 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.148 0.852 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.877 -11.518 -23.898 29.489 hybrid contribution 0.198 0.049 0.273 0.341 sum 13.076 -11.469 -23.625 29.337 Atomic orbital electron populations 1.21985 0.92993 1.01980 1.03812 1.19937 0.97275 0.99280 0.89128 0.89209 1.21819 1.02642 1.00284 0.92580 1.20533 0.79599 0.85877 0.84361 1.90710 1.39296 1.24413 1.86028 1.47828 1.54393 1.24485 1.06453 1.21695 0.89266 0.86644 1.04193 1.22700 0.96289 0.94561 0.88600 1.86604 1.30914 1.74055 1.45081 1.21700 0.97275 0.96475 0.85583 1.20903 0.92933 0.94604 0.90045 1.42211 1.22001 1.44008 1.29203 1.19202 0.95364 1.15764 1.06377 0.91279 1.24750 0.98708 0.98878 0.98790 1.69668 1.37115 1.26145 1.25267 0.86166 0.83446 0.77018 0.79429 1.21760 1.21754 1.20800 1.19810 0.95043 0.93888 0.95569 1.21129 1.00743 0.94350 0.98130 1.21016 0.96109 1.00070 0.93456 1.21144 1.01857 0.93255 1.01789 1.17715 0.94363 0.91141 0.88821 1.91503 1.72807 1.81034 1.66677 1.21115 1.00532 1.01297 0.93991 0.92955 0.89567 0.92674 0.88745 0.89110 0.88961 0.89089 0.92823 0.93733 0.77642 0.89602 0.90130 0.96197 0.96727 0.78240 0.93535 0.85184 0.84986 0.84951 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.75 37.16 0.33 -1.28 16 2 C -0.04 -0.36 2.21 -91.77 -0.20 -0.56 16 3 H 0.09 0.97 7.69 -51.93 -0.40 0.57 16 4 C -0.13 -1.21 3.47 -27.88 -0.10 -1.31 16 5 C 0.51 7.05 7.39 -10.99 -0.08 6.97 16 6 O -0.53 -9.53 13.55 5.55 0.08 -9.46 16 7 N -0.60 -8.30 2.44 -173.69 -0.42 -8.72 16 8 C 0.11 1.04 5.62 -4.04 -0.02 1.02 16 9 C 0.06 0.47 7.38 37.16 0.27 0.75 16 10 O -0.56 -5.97 12.48 -35.23 -0.44 -6.41 16 11 C 0.11 2.03 5.34 -4.04 -0.02 2.00 16 12 C 0.14 3.13 6.58 -4.04 -0.03 3.10 16 13 N -0.73 -19.61 5.60 -59.91 -0.34 -19.95 16 14 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 15 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 16 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 17 N -0.93 -29.10 13.06 55.49 0.72 -28.38 16 18 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 C -0.04 -0.36 4.78 -104.63 -0.50 -0.86 16 23 C -0.13 -0.88 8.76 -39.58 -0.35 -1.22 16 24 C -0.09 -0.56 10.04 -39.59 -0.40 -0.95 16 25 C -0.16 -1.17 10.03 -39.51 -0.40 -1.57 16 26 C 0.10 0.88 7.30 -39.42 -0.29 0.59 16 27 F -0.14 -1.40 17.27 2.25 0.04 -1.37 16 28 C -0.15 -1.32 9.65 -39.51 -0.38 -1.70 16 29 H 0.05 0.48 7.39 -51.93 -0.38 0.10 16 30 H 0.09 1.20 5.95 -51.93 -0.31 0.89 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.67 6.83 -51.93 -0.35 0.32 16 33 H 0.09 0.67 7.26 -51.93 -0.38 0.29 16 34 H 0.09 1.00 8.07 -51.93 -0.42 0.58 16 35 H 0.09 0.60 6.44 -51.93 -0.33 0.27 16 36 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.04 0.34 7.30 -51.93 -0.38 -0.04 16 38 H 0.38 2.35 9.12 45.56 0.42 2.76 16 39 H 0.09 1.56 7.11 -51.93 -0.37 1.19 16 40 H 0.08 1.63 7.42 -51.93 -0.39 1.25 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.38 10.79 7.67 -40.82 -0.31 10.48 16 44 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.13 0.73 7.16 -52.48 -0.38 0.35 16 46 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 47 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 48 H 0.14 1.09 7.95 -52.49 -0.42 0.67 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -36.16 396.24 -8.30 -44.47 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.48 Total: 8.45 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.41 Total: -2.63 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.03 Total: -57.05 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.36 Total: -15.87 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.16 -8.30 -44.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326091080.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.687 kcal (2) G-P(sol) polarization free energy of solvation -36.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds