Wall clock time and date at job start Tue Mar 31 2020 20:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46922 * 2 1 4 4 C 1.53000 * 109.47284 * 120.00498 * 2 1 3 5 5 C 1.50700 * 109.46756 * 294.99909 * 4 2 1 6 6 O 1.21283 * 120.00485 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99799 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00254 * 359.97438 * 7 5 4 9 9 C 1.52998 * 109.46919 * 89.99783 * 8 7 5 10 10 O 1.42902 * 109.47101 * 65.00679 * 9 8 7 11 11 C 1.46502 * 120.00104 * 179.97438 * 7 5 4 12 12 C 1.52997 * 109.46944 * 90.00005 * 11 7 5 13 13 N 1.46502 * 109.47149 * 180.02562 * 12 11 7 14 14 C 1.36940 * 120.00324 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99704 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00150 * 179.97438 * 14 13 12 17 17 N 1.31625 * 120.00361 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99933 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47270 * 90.00170 * 18 16 14 20 20 H 1.48504 * 109.47193 * 210.00075 * 18 16 14 21 21 H 1.48499 * 109.47223 * 330.00136 * 18 16 14 22 22 C 1.50699 * 109.46577 * 240.00126 * 2 1 3 23 23 C 1.38264 * 119.99175 * 300.02021 * 22 2 1 24 24 C 1.38223 * 120.05372 * 179.97438 * 23 22 2 25 25 C 1.38223 * 120.02448 * 0.02779 * 24 23 22 26 26 C 1.38437 * 119.97390 * 359.69495 * 25 24 23 27 27 F 1.35099 * 120.02356 * 180.32333 * 26 25 24 28 28 C 1.38183 * 119.98467 * 120.00449 * 22 2 1 29 29 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46603 * 299.99435 * 1 2 3 31 31 H 1.08994 * 109.47161 * 59.99473 * 1 2 3 32 32 H 1.09001 * 109.47089 * 54.99298 * 4 2 1 33 33 H 1.08997 * 109.47124 * 174.99997 * 4 2 1 34 34 H 1.09001 * 109.47288 * 210.00007 * 8 7 5 35 35 H 1.09001 * 109.46928 * 330.00106 * 8 7 5 36 36 H 1.09007 * 109.47076 * 184.99951 * 9 8 7 37 37 H 1.09004 * 109.47522 * 305.00123 * 9 8 7 38 38 H 0.96707 * 113.99787 * 179.97438 * 10 9 8 39 39 H 1.08994 * 109.47614 * 209.99853 * 11 7 5 40 40 H 1.09007 * 109.46870 * 330.00275 * 11 7 5 41 41 H 1.09001 * 109.47392 * 299.99953 * 12 11 7 42 42 H 1.08994 * 109.47364 * 60.00322 * 12 11 7 43 43 H 0.97004 * 120.00295 * 359.97438 * 13 12 11 44 44 H 0.96995 * 119.99969 * 179.97438 * 17 16 14 45 45 H 1.08004 * 119.96758 * 359.97438 * 23 22 2 46 46 H 1.07999 * 119.98701 * 180.02562 * 24 23 22 47 47 H 1.08001 * 120.01081 * 180.02562 * 25 24 23 48 48 H 1.08002 * 120.01017 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.6414 0.0569 2.4765 6 8 1.0118 1.0873 2.3633 7 7 1.9854 -0.3916 3.7000 8 6 2.7465 -1.6359 3.8369 9 6 4.2439 -1.3233 3.8113 10 8 4.5872 -0.5423 4.9577 11 6 1.5984 0.3652 4.8932 12 6 0.2311 -0.1171 5.3818 13 7 -0.1563 0.6401 6.5746 14 6 -1.3508 0.3811 7.1921 15 1 -2.0075 -0.3811 6.7994 16 6 -1.7176 1.0982 8.3226 17 7 -0.9175 2.0275 8.8008 18 14 -3.3467 0.7445 9.1652 19 1 -3.1523 -0.3048 10.1979 20 1 -3.8509 1.9844 9.8084 21 1 -4.3321 0.2726 8.1595 22 6 2.0322 -0.7104 -1.2305 23 6 1.6977 -2.0340 -1.4494 24 6 2.1572 -2.6867 -2.5778 25 6 2.9523 -2.0168 -3.4887 26 6 3.2832 -0.6899 -3.2735 27 9 4.0549 -0.0323 -4.1664 28 6 2.8267 -0.0386 -2.1399 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6054 -1.7199 1.2951 33 1 3.1264 -0.7996 1.2055 34 1 2.4915 -2.1157 4.7818 35 1 2.5007 -2.3046 3.0119 36 1 4.8099 -2.2548 3.8236 37 1 4.4832 -0.7648 2.9062 38 1 5.5239 -0.3069 5.0072 39 1 2.3394 0.2112 5.6775 40 1 1.5433 1.4261 4.6486 41 1 -0.5101 0.0370 4.5975 42 1 0.2861 -1.1778 5.6264 43 1 0.4334 1.3250 6.9271 44 1 -1.1740 2.5289 9.5906 45 1 1.0768 -2.5582 -0.7379 46 1 1.8949 -3.7204 -2.7479 47 1 3.3108 -2.5269 -4.3705 48 1 3.0873 0.9955 -1.9691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326091080.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:23 Heat of formation + Delta-G solvation = -124.258347 kcal Electronic energy + Delta-G solvation = -29156.058920 eV Core-core repulsion = 24931.559588 eV Total energy + Delta-G solvation = -4224.499331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.88447 -41.35582 -40.11499 -38.16493 -37.13794 -35.98068 -35.78569 -33.48836 -31.73748 -31.05432 -30.45031 -29.48408 -28.14681 -25.67848 -24.65983 -23.90849 -23.68848 -23.17726 -21.36408 -19.92204 -19.17974 -18.73361 -18.15784 -17.77504 -17.43969 -17.15093 -17.01885 -16.60807 -16.53088 -16.42876 -15.70470 -15.46083 -15.35871 -15.11138 -14.91409 -14.78913 -14.55310 -14.37279 -14.08423 -13.95505 -13.59873 -13.33489 -13.19059 -13.03376 -12.97226 -12.87342 -12.67339 -12.56254 -12.46033 -12.16729 -12.12987 -12.09705 -11.87870 -11.76363 -11.70271 -10.98327 -10.88014 -10.66388 -9.89818 -9.64268 -9.59042 -9.06876 -7.97629 -5.28848 0.21554 0.28657 1.45247 1.48708 1.57119 1.68193 1.98229 2.55599 2.66028 3.21923 3.35094 3.46151 3.48587 3.74386 3.84841 3.98420 4.07152 4.09738 4.16894 4.19814 4.24232 4.31453 4.32892 4.39385 4.42779 4.52322 4.53494 4.61542 4.67308 4.70908 4.78681 4.88968 4.96348 5.03832 5.08636 5.11530 5.16129 5.18826 5.22370 5.37855 5.42447 5.48781 5.59220 5.62854 5.98399 6.23423 6.49680 6.98697 7.25499 7.28989 8.01417 8.26599 9.25939 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.002240 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.132217 B =12498.120950 C =13379.371594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.032 4.032 3 H 0.067 0.933 4 C -0.121 4.121 5 C 0.502 3.498 6 O -0.580 6.580 7 N -0.599 5.599 8 C 0.096 3.904 9 C 0.057 3.943 10 O -0.596 6.596 11 C 0.133 3.867 12 C 0.151 3.849 13 N -0.744 5.744 14 C -0.250 4.250 15 H 0.074 0.926 16 C -0.077 4.077 17 N -0.969 5.969 18 Si 0.981 3.019 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.270 1.270 22 C -0.047 4.047 23 C -0.121 4.121 24 C -0.082 4.082 25 C -0.160 4.160 26 C 0.076 3.924 27 F -0.154 7.154 28 C -0.163 4.163 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.133 0.867 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.393 0.607 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.002 0.998 42 H 0.027 0.973 43 H 0.374 0.626 44 H 0.253 0.747 45 H 0.151 0.849 46 H 0.163 0.837 47 H 0.149 0.851 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.279 -15.497 -25.281 32.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.051 4.051 3 H 0.086 0.914 4 C -0.160 4.160 5 C 0.292 3.708 6 O -0.460 6.460 7 N -0.330 5.330 8 C -0.026 4.026 9 C -0.022 4.022 10 O -0.404 6.404 11 C 0.008 3.992 12 C 0.024 3.976 13 N -0.387 5.387 14 C -0.381 4.381 15 H 0.092 0.908 16 C -0.269 4.269 17 N -0.619 5.619 18 Si 0.809 3.191 19 H -0.208 1.208 20 H -0.220 1.220 21 H -0.195 1.195 22 C -0.047 4.047 23 C -0.139 4.139 24 C -0.100 4.100 25 C -0.179 4.179 26 C 0.057 3.943 27 F -0.133 7.133 28 C -0.182 4.182 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.243 0.757 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.020 0.980 42 H 0.045 0.955 43 H 0.205 0.795 44 H 0.062 0.938 45 H 0.169 0.831 46 H 0.181 0.819 47 H 0.167 0.833 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.197 -15.102 -25.250 32.246 hybrid contribution 0.141 1.121 0.614 1.286 sum 13.339 -13.981 -24.636 31.310 Atomic orbital electron populations 1.21918 0.94028 1.02639 1.01881 1.19786 0.96346 0.98616 0.90321 0.91424 1.21854 1.04392 1.00520 0.89223 1.21464 0.78394 0.85525 0.85430 1.90700 1.41578 1.26919 1.86770 1.47903 1.54640 1.25484 1.05020 1.22119 0.89971 0.85099 1.05406 1.22808 0.95264 0.95941 0.88140 1.86553 1.32707 1.74764 1.46363 1.21159 0.95223 0.95358 0.87414 1.20948 0.94356 0.94563 0.87768 1.42425 1.21467 1.44311 1.30488 1.19604 0.96199 1.15697 1.06619 0.90764 1.25678 1.02590 0.98914 0.99702 1.69837 1.39102 1.27288 1.25722 0.85044 0.79014 0.76742 0.78350 1.20759 1.21976 1.19532 1.19614 0.95656 0.94580 0.94862 1.21390 1.00266 0.93542 0.98723 1.21365 0.94846 1.01302 0.92468 1.21435 1.01435 0.92478 1.02556 1.17960 0.95241 0.92085 0.88979 1.91468 1.73283 1.81447 1.67077 1.21156 1.01172 1.01345 0.94484 0.90916 0.93261 0.92801 0.85507 0.86425 0.90069 0.84968 0.89463 0.92854 0.75750 0.89697 0.93154 0.97992 0.95491 0.79475 0.93817 0.83094 0.81920 0.83325 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.75 71.98 0.63 -2.46 16 2 C -0.03 -0.58 2.21 -11.54 -0.03 -0.60 16 3 H 0.07 1.52 7.69 -2.39 -0.02 1.50 16 4 C -0.12 -1.88 3.47 29.85 0.10 -1.77 16 5 C 0.50 13.72 7.39 87.66 0.65 14.37 16 6 O -0.58 -22.00 13.55 -3.04 -0.04 -22.04 16 7 N -0.60 -16.20 2.44 -821.81 -2.00 -18.20 16 8 C 0.10 1.62 5.62 86.38 0.49 2.11 16 9 C 0.06 0.76 7.38 71.98 0.53 1.30 16 10 O -0.60 -11.92 12.48 -148.98 -1.86 -13.78 16 11 C 0.13 4.96 5.34 86.38 0.46 5.42 16 12 C 0.15 6.75 6.58 86.38 0.57 7.32 16 13 N -0.74 -41.19 5.60 -343.46 -1.92 -43.12 16 14 C -0.25 -14.80 9.99 84.03 0.84 -13.96 16 15 H 0.07 4.23 7.83 -2.91 -0.02 4.20 16 16 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 17 N -0.97 -61.69 13.06 21.65 0.28 -61.41 16 18 Si 0.98 47.64 29.55 68.60 2.03 49.66 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 22 C -0.05 -0.68 4.78 -19.87 -0.09 -0.78 16 23 C -0.12 -1.22 8.76 22.27 0.20 -1.03 16 24 C -0.08 -0.69 10.04 22.26 0.22 -0.47 16 25 C -0.16 -1.88 10.03 22.31 0.22 -1.66 16 26 C 0.08 1.27 7.30 22.38 0.16 1.43 16 27 F -0.15 -3.02 17.27 44.97 0.78 -2.24 16 28 C -0.16 -2.73 9.65 22.31 0.22 -2.51 16 29 H 0.07 1.18 7.39 -2.39 -0.02 1.16 16 30 H 0.05 1.42 5.95 -2.38 -0.01 1.41 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.13 1.19 6.83 -2.39 -0.02 1.18 16 33 H 0.12 1.27 7.26 -2.39 -0.02 1.25 16 34 H 0.08 1.59 8.07 -2.39 -0.02 1.57 16 35 H 0.13 1.11 6.44 -2.39 -0.02 1.10 16 36 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.05 0.63 7.30 -2.38 -0.02 0.62 16 38 H 0.39 4.42 9.12 -74.05 -0.68 3.74 16 39 H 0.08 3.18 7.11 -2.39 -0.02 3.17 16 40 H 0.05 2.17 7.42 -2.38 -0.02 2.16 16 41 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.37 21.90 7.67 -92.71 -0.71 21.19 16 44 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.15 0.89 7.16 -2.91 -0.02 0.87 16 46 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 47 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 48 H 0.13 2.18 7.95 -2.91 -0.02 2.16 16 Total: -1.00 -82.40 396.24 2.50 -79.90 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.40 Total: 28.65 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 5.63 Total: 2.57 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -3.64 Total: -122.73 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -1.90 Total: -35.82 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.66 kcal Total: -82.40 2.50 -79.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326091080.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.356 kcal (2) G-P(sol) polarization free energy of solvation -82.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds