Wall clock time and date at job start Tue Mar 31 2020 21:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35941 * 116.99938 * 2 1 4 4 C 1.38728 * 120.02960 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.97005 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.03098 * 359.97438 * 5 4 3 7 7 F 1.35102 * 119.97302 * 180.02562 * 6 5 4 8 8 C 1.38436 * 120.05683 * 359.78798 * 6 5 4 9 9 C 1.38169 * 120.03087 * 0.46409 * 8 6 5 10 10 C 1.50699 * 120.01706 * 179.78926 * 9 8 6 11 11 C 1.50693 * 109.47580 * 264.72840 * 10 9 8 12 12 O 1.21286 * 119.99847 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00669 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99520 * 359.97438 * 13 11 10 15 15 C 1.46496 * 120.00564 * 179.97438 * 13 11 10 16 16 C 1.52998 * 109.47333 * 89.99811 * 15 13 11 17 17 C 1.52997 * 109.47370 * 180.02562 * 16 15 13 18 18 N 1.46495 * 109.47463 * 179.97438 * 17 16 15 19 19 C 1.46496 * 120.00285 * 269.99962 * 18 17 16 20 20 C 1.36938 * 120.00054 * 89.99531 * 18 17 16 21 21 H 1.08001 * 120.00241 * 22.34796 * 20 18 17 22 22 C 1.38814 * 120.00237 * 202.34775 * 20 18 17 23 23 N 1.31615 * 119.99864 * 11.34682 * 22 20 18 24 24 Si 1.86799 * 119.99804 * 191.34808 * 22 20 18 25 25 H 1.48497 * 109.47484 * 60.00334 * 24 22 20 26 26 H 1.48508 * 109.46876 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47291 * 299.99638 * 24 22 20 28 28 H 1.08999 * 109.47195 * 300.00072 * 1 2 3 29 29 H 1.09006 * 109.46963 * 60.00065 * 1 2 3 30 30 H 1.09003 * 109.46897 * 179.97438 * 1 2 3 31 31 H 1.07992 * 120.01748 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.98990 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.98229 * 180.23761 * 8 6 5 34 34 H 1.09001 * 109.47388 * 144.72155 * 10 9 8 35 35 H 1.09007 * 109.46732 * 24.72979 * 10 9 8 36 36 H 1.08992 * 109.47550 * 90.00349 * 14 13 11 37 37 H 1.09007 * 109.47271 * 210.00445 * 14 13 11 38 38 H 1.09002 * 109.47177 * 329.99712 * 14 13 11 39 39 H 1.09004 * 109.47390 * 209.99934 * 15 13 11 40 40 H 1.09001 * 109.46941 * 329.99982 * 15 13 11 41 41 H 1.09004 * 109.46983 * 300.00372 * 16 15 13 42 42 H 1.09002 * 109.47422 * 59.99913 * 16 15 13 43 43 H 1.09004 * 109.47114 * 299.99977 * 17 16 15 44 44 H 1.09002 * 109.47176 * 59.99447 * 17 16 15 45 45 H 1.09009 * 109.47171 * 94.20953 * 19 18 17 46 46 H 1.08997 * 109.47491 * 214.20468 * 19 18 17 47 47 H 1.08995 * 109.47169 * 334.21113 * 19 18 17 48 48 H 0.96997 * 119.99820 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3751 0.0005 5 6 1.9196 3.6052 0.0011 6 6 3.3025 3.6770 0.0016 7 9 3.9159 4.8807 0.0027 8 6 4.0571 2.5164 0.0060 9 6 3.4311 1.2846 0.0003 10 6 4.2528 0.0214 0.0003 11 6 4.4232 -0.4673 -1.4150 12 8 3.9258 0.1493 -2.3334 13 7 5.1273 -1.5900 -1.6603 14 6 5.7276 -2.3351 -0.5510 15 6 5.2924 -2.0652 -3.0362 16 6 6.5546 -1.4476 -3.6412 17 6 6.7267 -1.9434 -5.0783 18 7 7.9349 -1.3515 -5.6578 19 6 7.8559 -0.0729 -6.3685 20 6 9.1383 -1.9934 -5.5352 21 1 9.1667 -3.0573 -5.3515 22 6 10.3219 -1.2766 -5.6470 23 7 10.2968 0.0393 -5.6465 24 14 11.9500 -2.1798 -5.7981 25 1 11.9316 -3.0336 -7.0129 26 1 13.0552 -1.1936 -5.9035 27 1 12.1576 -3.0302 -4.5985 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2127 2.3195 0.0005 32 1 1.3321 4.5114 0.0011 33 1 5.1356 2.5738 0.0103 34 1 3.7453 -0.7423 0.5897 35 1 5.2317 0.2247 0.4348 36 1 5.0183 -3.0778 -0.1861 37 1 6.6321 -2.8356 -0.8968 38 1 5.9794 -1.6461 0.2553 39 1 5.3832 -3.1515 -3.0370 40 1 4.4251 -1.7727 -3.6281 41 1 6.4638 -0.3613 -3.6404 42 1 7.4219 -1.7400 -3.0493 43 1 6.8173 -3.0297 -5.0795 44 1 5.8593 -1.6507 -5.6700 45 1 8.0872 0.7402 -5.6803 46 1 8.5726 -0.0687 -7.1897 47 1 6.8492 0.0612 -6.7641 48 1 11.1239 0.5401 -5.7242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327271524.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:46 Heat of formation + Delta-G solvation = -66.222031 kcal Electronic energy + Delta-G solvation = -29397.196255 eV Core-core repulsion = 25175.213567 eV Total energy + Delta-G solvation = -4221.982688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.90918 -40.68007 -39.45769 -37.46087 -36.15584 -35.18201 -33.29600 -32.12988 -30.30596 -29.99706 -28.27967 -27.30995 -26.86644 -25.78996 -24.97012 -22.77073 -22.39948 -21.61912 -20.12426 -19.10086 -18.25910 -17.30930 -17.20333 -17.01442 -16.65488 -16.03378 -15.77024 -15.51951 -15.39305 -14.91311 -14.73047 -14.61586 -14.09932 -13.77038 -13.58448 -13.33209 -13.22823 -13.01951 -12.91573 -12.77962 -12.58709 -12.51786 -12.15926 -12.14925 -11.91710 -11.38359 -11.31918 -11.16869 -11.06287 -10.84797 -10.76907 -10.62368 -10.36903 -10.01644 -9.84729 -9.70927 -9.63821 -9.18883 -8.51573 -8.42287 -8.24747 -6.66471 -5.64659 -3.10196 0.90484 1.03588 2.81785 2.97026 3.08280 3.41269 3.44279 3.46979 3.48002 4.09736 4.32825 4.44137 4.55512 4.68246 4.72313 4.82546 4.85365 5.01327 5.06595 5.13819 5.18724 5.22659 5.35534 5.45242 5.47489 5.50669 5.60734 5.62457 5.71940 5.85730 5.91094 5.94757 6.07973 6.13031 6.21394 6.34025 6.49643 6.57201 6.77088 6.90441 6.95637 7.06193 7.22279 7.48675 7.54585 7.82033 7.88729 8.36597 8.48223 9.31816 9.96038 10.45950 11.40412 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.002524 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.691814 B =11089.920258 C =12046.356377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.134 3.866 4 C -0.181 4.181 5 C -0.114 4.114 6 C 0.063 3.937 7 F -0.141 7.141 8 C -0.101 4.101 9 C -0.066 4.066 10 C -0.094 4.094 11 C 0.517 3.483 12 O -0.530 6.530 13 N -0.615 5.615 14 C 0.077 3.923 15 C 0.117 3.883 16 C -0.149 4.149 17 C 0.156 3.844 18 N -0.603 5.603 19 C 0.165 3.835 20 C -0.252 4.252 21 H 0.067 0.933 22 C -0.001 4.001 23 N -0.909 5.909 24 Si 0.904 3.096 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.284 1.284 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.036 0.964 45 H 0.026 0.974 46 H 0.043 0.957 47 H -0.004 1.004 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.316 0.268 17.312 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.089 3.911 4 C -0.200 4.200 5 C -0.133 4.133 6 C 0.044 3.956 7 F -0.119 7.119 8 C -0.120 4.120 9 C -0.067 4.067 10 C -0.134 4.134 11 C 0.304 3.696 12 O -0.406 6.406 13 N -0.349 5.349 14 C -0.066 4.066 15 C -0.006 4.006 16 C -0.191 4.191 17 C 0.028 3.972 18 N -0.326 5.326 19 C 0.020 3.980 20 C -0.382 4.382 21 H 0.085 0.915 22 C -0.199 4.199 23 N -0.554 5.554 24 Si 0.735 3.265 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.211 1.211 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.045 0.955 46 H 0.062 0.938 47 H 0.015 0.985 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.327 0.562 16.763 26.353 hybrid contribution 0.965 0.004 0.073 0.967 sum -19.362 0.566 16.835 25.664 Atomic orbital electron populations 1.23085 0.78277 1.04124 1.01337 1.86087 1.21397 1.26381 1.88402 1.18727 0.91524 0.84492 0.96377 1.20998 1.00250 0.91283 1.07473 1.20884 0.92678 0.98657 1.01120 1.17465 0.90786 0.80575 1.06805 1.91498 1.83318 1.42807 1.94316 1.20870 1.00869 0.90089 1.00179 1.18439 0.90276 0.94191 1.03829 1.20548 1.01085 0.95708 0.96023 1.20329 0.78173 0.80380 0.90708 1.90717 1.48095 1.55561 1.46213 1.47919 1.52866 1.25851 1.08222 1.21803 0.98702 0.96602 0.89536 1.21620 0.99942 0.98185 0.80812 1.22604 0.95570 1.01124 0.99776 1.20727 0.89477 0.96268 0.90703 1.43968 1.03788 1.23379 1.61446 1.20776 0.94288 0.87365 0.95547 1.19170 0.83258 0.91316 1.44419 0.91524 1.25039 0.97863 0.95398 1.01587 1.70069 1.26027 1.04504 1.54826 0.86341 0.83602 0.78561 0.78031 1.21139 1.21686 1.21053 0.92636 0.92469 0.88136 0.84519 0.84547 0.83970 0.87482 0.87819 0.92736 0.90536 0.91292 0.91076 0.90447 0.92439 0.92046 0.94023 0.94517 0.95530 0.93781 0.98529 0.93790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.30 9.63 -19.56 -0.19 -3.49 16 3 C 0.13 1.55 6.66 -39.23 -0.26 1.29 16 4 C -0.18 -1.78 9.04 -39.44 -0.36 -2.13 16 5 C -0.11 -1.17 10.02 -39.53 -0.40 -1.57 16 6 C 0.06 0.77 7.30 -39.42 -0.29 0.48 16 7 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 8 C -0.10 -1.25 9.65 -39.53 -0.38 -1.63 16 9 C -0.07 -0.81 4.39 -104.48 -0.46 -1.27 16 10 C -0.09 -1.04 4.10 -29.04 -0.12 -1.16 16 11 C 0.52 7.81 7.67 -10.99 -0.08 7.73 16 12 O -0.53 -10.25 15.61 5.55 0.09 -10.16 16 13 N -0.61 -8.56 2.87 -181.58 -0.52 -9.08 16 14 C 0.08 0.75 10.24 59.85 0.61 1.36 16 15 C 0.12 1.82 5.41 -4.04 -0.02 1.80 16 16 C -0.15 -2.95 5.86 -26.73 -0.16 -3.10 16 17 C 0.16 3.35 5.71 -4.05 -0.02 3.33 16 18 N -0.60 -15.96 2.93 -181.12 -0.53 -16.49 16 19 C 0.16 4.37 9.01 59.84 0.54 4.91 16 20 C -0.25 -7.10 9.67 -15.06 -0.15 -7.25 16 21 H 0.07 1.81 7.84 -52.49 -0.41 1.40 16 22 C 0.00 -0.03 5.13 -17.43 -0.09 -0.12 16 23 N -0.91 -27.36 10.58 55.49 0.59 -26.77 16 24 Si 0.90 22.22 29.57 -169.99 -5.03 17.19 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.14 0.94 6.30 -52.49 -0.33 0.61 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.11 0.98 7.65 -51.93 -0.40 0.58 16 35 H 0.10 0.93 7.31 -51.92 -0.38 0.55 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.07 0.54 6.44 -51.93 -0.33 0.21 16 39 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 40 H 0.08 1.29 7.42 -51.93 -0.39 0.90 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 44 H 0.04 0.74 7.86 -51.93 -0.41 0.34 16 45 H 0.03 0.76 7.42 -51.92 -0.39 0.37 16 46 H 0.04 1.23 7.19 -51.93 -0.37 0.86 16 47 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 48 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 399.22 15.07 6.02 6.02 Total: -1.00 -35.67 399.22 -7.71 -43.38 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -7.54 Total: -2.64 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -0.64 Total: 3.83 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.46 Total: -52.34 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.10 Total: -13.65 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.67 -7.71 -43.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327271524.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.846 kcal (2) G-P(sol) polarization free energy of solvation -35.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds