Wall clock time and date at job start Tue Mar 31 2020 21:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35941 * 116.99938 * 2 1 4 4 C 1.38728 * 120.02960 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.97005 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.03098 * 359.97438 * 5 4 3 7 7 F 1.35102 * 119.97302 * 180.02562 * 6 5 4 8 8 C 1.38436 * 120.05683 * 359.78798 * 6 5 4 9 9 C 1.38169 * 120.03087 * 0.46409 * 8 6 5 10 10 C 1.50699 * 120.01706 * 179.78926 * 9 8 6 11 11 C 1.50693 * 109.47580 * 264.72840 * 10 9 8 12 12 O 1.21286 * 119.99847 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00669 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99520 * 359.97438 * 13 11 10 15 15 C 1.46496 * 120.00564 * 179.97438 * 13 11 10 16 16 C 1.52998 * 109.47333 * 89.99811 * 15 13 11 17 17 C 1.52997 * 109.47370 * 180.02562 * 16 15 13 18 18 N 1.46495 * 109.47463 * 179.97438 * 17 16 15 19 19 C 1.46496 * 120.00285 * 269.99962 * 18 17 16 20 20 C 1.36938 * 120.00054 * 89.99531 * 18 17 16 21 21 H 1.08001 * 120.00241 * 22.34796 * 20 18 17 22 22 C 1.38814 * 120.00237 * 202.34775 * 20 18 17 23 23 N 1.31615 * 119.99864 * 11.34682 * 22 20 18 24 24 Si 1.86799 * 119.99804 * 191.34808 * 22 20 18 25 25 H 1.48497 * 109.47484 * 60.00334 * 24 22 20 26 26 H 1.48508 * 109.46876 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47291 * 299.99638 * 24 22 20 28 28 H 1.08999 * 109.47195 * 300.00072 * 1 2 3 29 29 H 1.09006 * 109.46963 * 60.00065 * 1 2 3 30 30 H 1.09003 * 109.46897 * 179.97438 * 1 2 3 31 31 H 1.07992 * 120.01748 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.98990 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.98229 * 180.23761 * 8 6 5 34 34 H 1.09001 * 109.47388 * 144.72155 * 10 9 8 35 35 H 1.09007 * 109.46732 * 24.72979 * 10 9 8 36 36 H 1.08992 * 109.47550 * 90.00349 * 14 13 11 37 37 H 1.09007 * 109.47271 * 210.00445 * 14 13 11 38 38 H 1.09002 * 109.47177 * 329.99712 * 14 13 11 39 39 H 1.09004 * 109.47390 * 209.99934 * 15 13 11 40 40 H 1.09001 * 109.46941 * 329.99982 * 15 13 11 41 41 H 1.09004 * 109.46983 * 300.00372 * 16 15 13 42 42 H 1.09002 * 109.47422 * 59.99913 * 16 15 13 43 43 H 1.09004 * 109.47114 * 299.99977 * 17 16 15 44 44 H 1.09002 * 109.47176 * 59.99447 * 17 16 15 45 45 H 1.09009 * 109.47171 * 94.20953 * 19 18 17 46 46 H 1.08997 * 109.47491 * 214.20468 * 19 18 17 47 47 H 1.08995 * 109.47169 * 334.21113 * 19 18 17 48 48 H 0.96997 * 119.99820 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3751 0.0005 5 6 1.9196 3.6052 0.0011 6 6 3.3025 3.6770 0.0016 7 9 3.9159 4.8807 0.0027 8 6 4.0571 2.5164 0.0060 9 6 3.4311 1.2846 0.0003 10 6 4.2528 0.0214 0.0003 11 6 4.4232 -0.4673 -1.4150 12 8 3.9258 0.1493 -2.3334 13 7 5.1273 -1.5900 -1.6603 14 6 5.7276 -2.3351 -0.5510 15 6 5.2924 -2.0652 -3.0362 16 6 6.5546 -1.4476 -3.6412 17 6 6.7267 -1.9434 -5.0783 18 7 7.9349 -1.3515 -5.6578 19 6 7.8559 -0.0729 -6.3685 20 6 9.1383 -1.9934 -5.5352 21 1 9.1667 -3.0573 -5.3515 22 6 10.3219 -1.2766 -5.6470 23 7 10.2968 0.0393 -5.6465 24 14 11.9500 -2.1798 -5.7981 25 1 11.9316 -3.0336 -7.0129 26 1 13.0552 -1.1936 -5.9035 27 1 12.1576 -3.0302 -4.5985 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2127 2.3195 0.0005 32 1 1.3321 4.5114 0.0011 33 1 5.1356 2.5738 0.0103 34 1 3.7453 -0.7423 0.5897 35 1 5.2317 0.2247 0.4348 36 1 5.0183 -3.0778 -0.1861 37 1 6.6321 -2.8356 -0.8968 38 1 5.9794 -1.6461 0.2553 39 1 5.3832 -3.1515 -3.0370 40 1 4.4251 -1.7727 -3.6281 41 1 6.4638 -0.3613 -3.6404 42 1 7.4219 -1.7400 -3.0493 43 1 6.8173 -3.0297 -5.0795 44 1 5.8593 -1.6507 -5.6700 45 1 8.0872 0.7402 -5.6803 46 1 8.5726 -0.0687 -7.1897 47 1 6.8492 0.0612 -6.7641 48 1 11.1239 0.5401 -5.7242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327271524.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:45 Heat of formation + Delta-G solvation = -87.674972 kcal Electronic energy + Delta-G solvation = -29398.126524 eV Core-core repulsion = 25175.213567 eV Total energy + Delta-G solvation = -4222.912957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.85388 -41.55048 -40.50364 -38.26535 -37.88415 -36.62418 -34.38868 -33.74928 -32.02395 -30.86632 -29.20215 -28.12312 -27.95345 -27.79056 -26.41962 -24.10423 -23.34489 -22.79555 -21.93637 -20.18348 -19.01931 -18.76646 -18.20622 -18.11990 -18.00118 -17.14548 -16.77494 -16.55560 -16.46088 -16.36765 -15.80461 -15.67851 -15.49232 -15.29170 -14.85459 -14.74751 -14.38707 -14.20279 -14.12730 -13.85916 -13.72726 -13.30553 -13.21971 -13.15849 -13.03913 -12.83150 -12.73735 -12.62924 -12.53589 -12.45804 -12.26416 -12.06013 -11.88204 -11.87256 -11.80720 -11.40405 -10.90546 -10.63899 -10.05972 -9.63252 -9.07868 -8.79020 -7.81893 -5.30929 0.07682 0.18086 1.46137 1.49766 1.56257 1.68953 2.07653 2.29806 2.51807 2.57311 3.24840 3.32319 3.52655 3.67423 3.68975 3.75073 4.02022 4.10870 4.14756 4.28855 4.32973 4.40014 4.40680 4.42529 4.43999 4.56247 4.62298 4.67517 4.74327 4.75598 4.80220 4.83047 4.84712 4.91244 4.99291 5.06995 5.09236 5.24930 5.26230 5.28086 5.44127 5.63067 5.63991 5.67484 5.67729 6.33042 6.33805 6.47047 7.14170 7.24204 7.86466 8.32660 9.22592 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.002524 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.691814 B =11089.920258 C =12046.356377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.128 3.872 4 C -0.179 4.179 5 C -0.111 4.111 6 C 0.037 3.963 7 F -0.151 7.151 8 C -0.116 4.116 9 C -0.088 4.088 10 C -0.085 4.085 11 C 0.509 3.491 12 O -0.582 6.582 13 N -0.617 5.617 14 C 0.069 3.931 15 C 0.127 3.873 16 C -0.129 4.129 17 C 0.152 3.848 18 N -0.622 5.622 19 C 0.180 3.820 20 C -0.261 4.261 21 H 0.078 0.922 22 C -0.060 4.060 23 N -0.945 5.945 24 Si 0.974 3.026 25 H -0.277 1.277 26 H -0.297 1.297 27 H -0.271 1.271 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.118 0.882 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.016 0.984 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.048 0.952 45 H -0.005 1.005 46 H 0.021 0.979 47 H 0.022 0.978 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.728 -1.902 18.861 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.081 3.919 4 C -0.198 4.198 5 C -0.130 4.130 6 C 0.018 3.982 7 F -0.130 7.130 8 C -0.135 4.135 9 C -0.089 4.089 10 C -0.124 4.124 11 C 0.298 3.702 12 O -0.462 6.462 13 N -0.349 5.349 14 C -0.072 4.072 15 C 0.004 3.996 16 C -0.170 4.170 17 C 0.026 3.974 18 N -0.345 5.345 19 C 0.035 3.965 20 C -0.391 4.391 21 H 0.095 0.905 22 C -0.254 4.254 23 N -0.592 5.592 24 Si 0.802 3.198 25 H -0.203 1.203 26 H -0.224 1.224 27 H -0.197 1.197 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.186 0.814 32 H 0.179 0.821 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.035 0.965 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.013 0.987 46 H 0.040 0.960 47 H 0.041 0.959 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.763 -1.664 18.356 28.519 hybrid contribution 1.281 0.634 -0.406 1.485 sum -20.482 -1.031 17.949 27.254 Atomic orbital electron populations 1.23396 0.76231 1.05746 1.02422 1.86058 1.23571 1.26037 1.88187 1.18935 0.91599 0.85442 0.95877 1.21359 1.01771 0.90447 1.06193 1.21202 0.91995 0.99995 0.99785 1.17759 0.91853 0.80222 1.08405 1.91462 1.83653 1.43319 1.94578 1.20992 1.01082 0.90628 1.00790 1.18636 0.91179 0.94365 1.04709 1.20562 1.02387 0.95861 0.93560 1.21064 0.77320 0.79958 0.91840 1.90685 1.50349 1.57097 1.48037 1.48035 1.52518 1.25913 1.08476 1.22105 0.99143 0.97344 0.88639 1.21380 0.96897 0.99507 0.81836 1.22289 0.97223 0.98594 0.98907 1.20920 0.87963 0.97102 0.91432 1.44247 1.04923 1.23119 1.62207 1.20487 0.94916 0.87018 0.94125 1.19579 0.84092 0.91959 1.43472 0.90471 1.25899 1.01511 0.96146 1.01849 1.70272 1.26436 1.06121 1.56345 0.85237 0.78832 0.77244 0.78497 1.20304 1.22373 1.19658 0.90539 0.92302 0.86409 0.81444 0.82144 0.84115 0.85083 0.85843 0.89900 0.90747 0.89292 0.87874 0.91621 0.96458 0.93612 0.92002 0.93383 0.98669 0.96044 0.95915 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -6.34 9.63 -92.89 -0.89 -7.23 16 3 C 0.13 2.79 6.66 22.49 0.15 2.94 16 4 C -0.18 -3.20 9.04 22.36 0.20 -3.00 16 5 C -0.11 -2.17 10.02 22.30 0.22 -1.94 16 6 C 0.04 0.91 7.30 22.38 0.16 1.08 16 7 F -0.15 -4.05 17.27 44.97 0.78 -3.27 16 8 C -0.12 -2.94 9.65 22.30 0.22 -2.72 16 9 C -0.09 -2.12 4.39 -19.77 -0.09 -2.21 16 10 C -0.08 -1.77 4.10 29.10 0.12 -1.65 16 11 C 0.51 15.15 7.67 87.66 0.67 15.82 16 12 O -0.58 -23.02 15.61 -3.05 -0.05 -23.07 16 13 N -0.62 -16.31 2.87 -846.77 -2.43 -18.75 16 14 C 0.07 1.16 10.24 127.77 1.31 2.47 16 15 C 0.13 3.82 5.41 86.38 0.47 4.28 16 16 C -0.13 -5.11 5.86 30.59 0.18 -4.93 16 17 C 0.15 6.43 5.71 86.38 0.49 6.93 16 18 N -0.62 -33.14 2.93 -726.95 -2.13 -35.26 16 19 C 0.18 9.80 9.01 127.77 1.15 10.95 16 20 C -0.26 -14.69 9.67 84.03 0.81 -13.88 16 21 H 0.08 4.10 7.84 -2.91 -0.02 4.08 16 22 C -0.06 -3.45 5.13 84.86 0.44 -3.01 16 23 N -0.94 -58.44 10.58 21.65 0.23 -58.21 16 24 Si 0.97 45.80 29.57 68.60 2.03 47.83 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 H 0.08 0.48 7.66 -2.39 -0.02 0.46 16 29 H 0.06 0.60 7.66 -2.38 -0.02 0.58 16 30 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.17 1.81 6.30 -2.91 -0.02 1.79 16 32 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.13 2.07 7.65 -2.39 -0.02 2.05 16 35 H 0.12 2.03 7.31 -2.38 -0.02 2.02 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.30 8.07 -2.38 -0.02 1.28 16 38 H 0.09 1.13 6.44 -2.39 -0.02 1.12 16 39 H 0.10 2.45 8.07 -2.39 -0.02 2.43 16 40 H 0.07 2.15 7.42 -2.39 -0.02 2.14 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 2.37 8.03 -2.39 -0.02 2.35 16 44 H 0.05 1.91 7.86 -2.39 -0.02 1.89 16 45 H 0.00 -0.30 7.42 -2.38 -0.02 -0.32 16 46 H 0.02 1.22 7.19 -2.39 -0.02 1.20 16 47 H 0.02 1.08 7.84 -2.39 -0.02 1.06 16 48 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -80.23 399.22 6.10 -74.13 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.95 Total: 11.45 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 7.62 Total: 12.39 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -4.33 Total: -112.22 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.94 Total: -30.30 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.78 Total: -3.27 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -80.23 6.10 -74.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327271524.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.545 kcal (2) G-P(sol) polarization free energy of solvation -80.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds