Wall clock time and date at job start Tue Mar 31 2020 20:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 5 5 C 1.36935 * 120.00239 * 275.00034 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72253 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72375 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72186 * 9 7 5 13 13 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 14 14 H 1.08998 * 109.46716 * 174.99405 * 13 2 1 15 15 C 1.52991 * 109.47459 * 294.99745 * 13 2 1 16 16 N 1.46506 * 109.46745 * 55.00261 * 13 2 1 17 17 C 1.34783 * 119.99632 * 154.99832 * 16 13 2 18 18 O 1.21281 * 120.00216 * 359.97438 * 17 16 13 19 19 C 1.50699 * 119.99586 * 179.97438 * 17 16 13 20 20 C 1.52997 * 109.47073 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.47384 * 179.97438 * 20 19 17 22 22 O 1.42902 * 109.47171 * 179.97438 * 21 20 19 23 23 C 1.35895 * 116.99972 * 179.97438 * 22 21 20 24 24 C 1.38775 * 120.04135 * 359.73175 * 23 22 21 25 25 C 1.38131 * 119.99209 * 179.74533 * 24 23 22 26 26 C 1.38247 * 120.08020 * 0.52648 * 25 24 23 27 27 C 1.38476 * 120.08616 * 359.74978 * 26 25 24 28 28 F 1.35106 * 119.99864 * 180.02562 * 27 26 25 29 29 C 1.38383 * 120.00538 * 359.97438 * 27 26 25 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99747 * 95.00774 * 4 2 1 34 34 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 35 35 H 1.09003 * 109.47094 * 179.97438 * 15 13 2 36 36 H 1.08993 * 109.47299 * 300.00398 * 15 13 2 37 37 H 1.09001 * 109.46982 * 60.00347 * 15 13 2 38 38 H 0.96997 * 120.00008 * 334.99823 * 16 13 2 39 39 H 1.08994 * 109.47357 * 300.00314 * 19 17 16 40 40 H 1.09007 * 109.46806 * 60.00550 * 19 17 16 41 41 H 1.09003 * 109.47681 * 300.00442 * 20 19 17 42 42 H 1.09005 * 109.47114 * 60.00350 * 20 19 17 43 43 H 1.08994 * 109.47299 * 300.00668 * 21 20 19 44 44 H 1.09007 * 109.46552 * 60.00713 * 21 20 19 45 45 H 1.07998 * 120.00228 * 359.97438 * 24 23 22 46 46 H 1.08005 * 119.96027 * 180.27752 * 25 24 23 47 47 H 1.08002 * 119.95811 * 179.76692 * 26 25 24 48 48 H 1.07999 * 120.03860 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8918 1.0403 2.4244 7 6 2.6122 -0.6617 3.5091 8 7 2.9205 -1.9400 3.4511 9 14 2.7899 0.2699 5.1184 10 1 3.2931 -0.6500 6.1700 11 1 3.7495 1.3891 4.9391 12 1 1.4684 0.8113 5.5254 13 6 2.0400 -0.7212 -1.2492 14 1 3.1263 -0.6442 -1.2951 15 6 1.6354 -2.1954 -1.1880 16 7 1.4559 -0.1035 -2.4423 17 6 2.0914 -0.1936 -3.6275 18 8 3.1470 -0.7856 -3.7062 19 6 1.4902 0.4412 -4.8549 20 6 2.4046 0.1945 -6.0565 21 6 1.7940 0.8385 -7.3029 22 8 2.6483 0.6085 -8.4251 23 6 2.2484 1.1183 -9.6196 24 6 1.0550 1.8207 -9.7107 25 6 0.6521 2.3429 -10.9244 26 6 1.4310 2.1574 -12.0514 27 6 2.6196 1.4522 -11.9654 28 9 3.3797 1.2725 -13.0679 29 6 3.0295 0.9324 -10.7502 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.8279 -2.4240 2.6156 35 1 1.9984 -2.7091 -2.0782 36 1 2.0699 -2.6549 -0.3003 37 1 0.5491 -2.2724 -1.1421 38 1 0.6118 0.3702 -2.3793 39 1 0.5106 0.0039 -5.0475 40 1 1.3840 1.5141 -4.6940 41 1 3.3841 0.6321 -5.8638 42 1 2.5113 -0.8783 -6.2177 43 1 0.8146 0.4005 -7.4955 44 1 1.6870 1.9113 -7.1420 45 1 0.4432 1.9622 -8.8321 46 1 -0.2746 2.8933 -10.9938 47 1 1.1122 2.5634 -13.0001 48 1 3.9566 0.3826 -10.6825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329195947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:08 Heat of formation + Delta-G solvation = -93.485130 kcal Electronic energy + Delta-G solvation = -27705.036781 eV Core-core repulsion = 23481.871876 eV Total energy + Delta-G solvation = -4223.164905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.36536 -40.61415 -39.88368 -37.87474 -37.14312 -34.24663 -34.09006 -31.97146 -31.33986 -30.28860 -29.48502 -28.12064 -27.48316 -24.43725 -23.80154 -23.36724 -22.83063 -21.74303 -20.37755 -19.40346 -19.00754 -17.59001 -17.38496 -16.90971 -16.89782 -16.60143 -16.41826 -16.05466 -15.73176 -15.37875 -15.02911 -14.63515 -14.45510 -14.25445 -13.85842 -13.71679 -13.60668 -13.19966 -13.14486 -12.79921 -12.55582 -12.50488 -12.41970 -12.01769 -11.93432 -11.79696 -11.67000 -11.57380 -11.35351 -11.02324 -10.87367 -10.64784 -10.46483 -10.25337 -10.01361 -9.79903 -9.39937 -9.24736 -8.98314 -8.89568 -8.80718 -7.11299 -6.14230 -3.15380 0.61338 0.78102 2.47460 2.66043 3.07755 3.26991 3.49540 3.52845 3.70465 3.86252 4.18713 4.42154 4.44531 4.45968 4.50432 4.60928 4.64550 4.71991 4.86573 4.92119 4.94319 5.02392 5.18898 5.30095 5.36293 5.43009 5.46270 5.57109 5.60934 5.67093 5.68739 5.69236 5.79821 5.89310 5.93287 6.01186 6.14666 6.21099 6.25263 6.33827 6.48120 6.59588 6.77357 6.85985 6.94852 7.58135 7.75920 8.28304 8.71093 9.16831 10.03036 10.16921 11.33732 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034882 B = 0.001420 C = 0.001406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.515820 B =19715.617659 C =19906.725605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.173 3.827 3 H 0.052 0.948 4 N -0.731 5.731 5 C -0.334 4.334 6 H 0.065 0.935 7 C -0.043 4.043 8 N -0.941 5.941 9 Si 1.080 2.920 10 H -0.285 1.285 11 H -0.295 1.295 12 H -0.295 1.295 13 C 0.134 3.866 14 H 0.087 0.913 15 C -0.158 4.158 16 N -0.720 5.720 17 C 0.510 3.490 18 O -0.540 6.540 19 C -0.138 4.138 20 C -0.105 4.105 21 C 0.059 3.941 22 O -0.307 6.307 23 C 0.164 3.836 24 C -0.221 4.221 25 C -0.050 4.050 26 C -0.196 4.196 27 C 0.139 3.861 28 F -0.134 7.134 29 C -0.192 4.192 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.369 0.631 34 H 0.255 0.745 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.398 0.602 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 8.832 -29.859 32.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.063 3.937 3 H 0.070 0.930 4 N -0.375 5.375 5 C -0.465 4.465 6 H 0.083 0.917 7 C -0.241 4.241 8 N -0.586 5.586 9 Si 0.911 3.089 10 H -0.210 1.210 11 H -0.222 1.222 12 H -0.223 1.223 13 C 0.030 3.970 14 H 0.105 0.895 15 C -0.217 4.217 16 N -0.373 5.373 17 C 0.295 3.705 18 O -0.417 6.417 19 C -0.178 4.178 20 C -0.143 4.143 21 C -0.016 4.016 22 O -0.220 6.220 23 C 0.118 3.882 24 C -0.240 4.240 25 C -0.068 4.068 26 C -0.215 4.215 27 C 0.119 3.881 28 F -0.113 7.113 29 C -0.212 4.212 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.205 0.795 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.234 0.766 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.154 0.846 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.910 8.366 -28.226 30.239 hybrid contribution -1.007 0.234 -1.732 2.017 sum -7.916 8.601 -29.957 32.157 Atomic orbital electron populations 1.22514 0.99244 1.01175 0.99828 1.20295 0.92162 0.95555 0.85736 0.92984 1.42451 1.79357 1.09938 1.05804 1.20022 1.42274 0.95198 0.88966 0.91711 1.25781 0.99181 0.97467 1.01643 1.70889 1.51151 1.08207 1.28397 0.83239 0.75863 0.74301 0.75505 1.21001 1.22245 1.22273 1.21330 0.99035 0.92787 0.83898 0.89502 1.22127 1.01513 0.95939 1.02084 1.46248 1.25824 1.56743 1.08438 1.20465 0.85051 0.80327 0.84609 1.90730 1.22527 1.42845 1.85582 1.21523 1.00518 1.02724 0.93028 1.21236 0.99879 1.03070 0.90070 1.22944 0.93429 1.00798 0.84421 1.86099 1.48589 1.72425 1.14899 1.18631 0.92161 0.91924 0.85506 1.21376 0.97901 1.04762 0.99956 1.20805 0.98709 0.96224 0.91054 1.21065 0.95293 1.04364 1.00733 1.17300 0.90230 0.98132 0.82394 1.91528 1.74979 1.93492 1.51288 1.20298 1.03373 1.07636 0.89886 0.92333 0.94756 0.92945 0.79528 0.93398 0.92922 0.91076 0.92457 0.76628 0.88633 0.88574 0.89723 0.89786 0.91534 0.91507 0.84623 0.84592 0.84579 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.01 37.16 0.33 -2.37 16 2 C 0.17 3.26 2.93 -67.93 -0.20 3.06 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.73 -17.63 5.03 -53.43 -0.27 -17.90 16 5 C -0.33 -9.15 9.93 -15.06 -0.15 -9.30 16 6 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 7 C -0.04 -1.23 5.50 -17.43 -0.10 -1.32 16 8 N -0.94 -28.78 13.70 55.49 0.76 -28.02 16 9 Si 1.08 25.56 29.92 -169.99 -5.09 20.47 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.30 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.13 2.23 2.62 -67.93 -0.18 2.05 16 14 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 15 C -0.16 -2.58 9.00 37.15 0.33 -2.24 16 16 N -0.72 -9.06 4.99 -53.81 -0.27 -9.32 16 17 C 0.51 6.47 7.79 -10.98 -0.09 6.39 16 18 O -0.54 -9.29 15.64 5.56 0.09 -9.20 16 19 C -0.14 -1.04 5.70 -27.89 -0.16 -1.20 16 20 C -0.10 -0.89 4.87 -26.73 -0.13 -1.02 16 21 C 0.06 0.39 4.74 37.16 0.18 0.57 16 22 O -0.31 -2.83 10.14 -19.41 -0.20 -3.03 16 23 C 0.16 1.39 6.68 -39.22 -0.26 1.13 16 24 C -0.22 -1.42 9.04 -39.42 -0.36 -1.78 16 25 C -0.05 -0.28 10.04 -39.62 -0.40 -0.67 16 26 C -0.20 -1.27 10.02 -39.49 -0.40 -1.67 16 27 C 0.14 1.14 7.30 -39.44 -0.29 0.86 16 28 F -0.13 -1.21 17.27 2.25 0.04 -1.17 16 29 C -0.19 -1.66 9.97 -39.37 -0.39 -2.05 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.41 6.29 -51.93 -0.33 0.09 16 32 H 0.05 0.86 6.57 -51.93 -0.34 0.52 16 33 H 0.37 9.20 4.60 -40.82 -0.19 9.01 16 34 H 0.25 7.67 6.77 -40.82 -0.28 7.39 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.28 6.29 -51.93 -0.33 0.96 16 37 H 0.06 0.86 6.57 -51.93 -0.34 0.52 16 38 H 0.40 3.91 6.58 -40.82 -0.27 3.64 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 42 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 43 H 0.07 0.33 7.65 -51.93 -0.40 -0.07 16 44 H 0.07 0.34 7.68 -51.93 -0.40 -0.06 16 45 H 0.14 0.60 6.30 -52.49 -0.33 0.27 16 46 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 47 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 48 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -34.08 394.86 -8.24 -42.32 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.01 Total: 9.49 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -2.24 Total: -9.58 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.22 Total: -55.25 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.11 Total: -12.24 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.09 Total: 20.47 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.08 -8.24 -42.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329195947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.162 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds