Wall clock time and date at job start Tue Mar 31 2020 20:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 5 5 C 1.36935 * 120.00239 * 275.00034 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72253 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72375 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72186 * 9 7 5 13 13 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 14 14 H 1.08998 * 109.46716 * 174.99405 * 13 2 1 15 15 C 1.52991 * 109.47459 * 294.99745 * 13 2 1 16 16 N 1.46506 * 109.46745 * 55.00261 * 13 2 1 17 17 C 1.34783 * 119.99632 * 154.99832 * 16 13 2 18 18 O 1.21281 * 120.00216 * 359.97438 * 17 16 13 19 19 C 1.50699 * 119.99586 * 179.97438 * 17 16 13 20 20 C 1.52997 * 109.47073 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.47384 * 179.97438 * 20 19 17 22 22 O 1.42902 * 109.47171 * 179.97438 * 21 20 19 23 23 C 1.35895 * 116.99972 * 179.97438 * 22 21 20 24 24 C 1.38775 * 120.04135 * 359.73175 * 23 22 21 25 25 C 1.38131 * 119.99209 * 179.74533 * 24 23 22 26 26 C 1.38247 * 120.08020 * 0.52648 * 25 24 23 27 27 C 1.38476 * 120.08616 * 359.74978 * 26 25 24 28 28 F 1.35106 * 119.99864 * 180.02562 * 27 26 25 29 29 C 1.38383 * 120.00538 * 359.97438 * 27 26 25 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99747 * 95.00774 * 4 2 1 34 34 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 35 35 H 1.09003 * 109.47094 * 179.97438 * 15 13 2 36 36 H 1.08993 * 109.47299 * 300.00398 * 15 13 2 37 37 H 1.09001 * 109.46982 * 60.00347 * 15 13 2 38 38 H 0.96997 * 120.00008 * 334.99823 * 16 13 2 39 39 H 1.08994 * 109.47357 * 300.00314 * 19 17 16 40 40 H 1.09007 * 109.46806 * 60.00550 * 19 17 16 41 41 H 1.09003 * 109.47681 * 300.00442 * 20 19 17 42 42 H 1.09005 * 109.47114 * 60.00350 * 20 19 17 43 43 H 1.08994 * 109.47299 * 300.00668 * 21 20 19 44 44 H 1.09007 * 109.46552 * 60.00713 * 21 20 19 45 45 H 1.07998 * 120.00228 * 359.97438 * 24 23 22 46 46 H 1.08005 * 119.96027 * 180.27752 * 25 24 23 47 47 H 1.08002 * 119.95811 * 179.76692 * 26 25 24 48 48 H 1.07999 * 120.03860 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8918 1.0403 2.4244 7 6 2.6122 -0.6617 3.5091 8 7 2.9205 -1.9400 3.4511 9 14 2.7899 0.2699 5.1184 10 1 3.2931 -0.6500 6.1700 11 1 3.7495 1.3891 4.9391 12 1 1.4684 0.8113 5.5254 13 6 2.0400 -0.7212 -1.2492 14 1 3.1263 -0.6442 -1.2951 15 6 1.6354 -2.1954 -1.1880 16 7 1.4559 -0.1035 -2.4423 17 6 2.0914 -0.1936 -3.6275 18 8 3.1470 -0.7856 -3.7062 19 6 1.4902 0.4412 -4.8549 20 6 2.4046 0.1945 -6.0565 21 6 1.7940 0.8385 -7.3029 22 8 2.6483 0.6085 -8.4251 23 6 2.2484 1.1183 -9.6196 24 6 1.0550 1.8207 -9.7107 25 6 0.6521 2.3429 -10.9244 26 6 1.4310 2.1574 -12.0514 27 6 2.6196 1.4522 -11.9654 28 9 3.3797 1.2725 -13.0679 29 6 3.0295 0.9324 -10.7502 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.8279 -2.4240 2.6156 35 1 1.9984 -2.7091 -2.0782 36 1 2.0699 -2.6549 -0.3003 37 1 0.5491 -2.2724 -1.1421 38 1 0.6118 0.3702 -2.3793 39 1 0.5106 0.0039 -5.0475 40 1 1.3840 1.5141 -4.6940 41 1 3.3841 0.6321 -5.8638 42 1 2.5113 -0.8783 -6.2177 43 1 0.8146 0.4005 -7.4955 44 1 1.6870 1.9113 -7.1420 45 1 0.4432 1.9622 -8.8321 46 1 -0.2746 2.8933 -10.9938 47 1 1.1122 2.5634 -13.0001 48 1 3.9566 0.3826 -10.6825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329195947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:07 Heat of formation + Delta-G solvation = -115.681199 kcal Electronic energy + Delta-G solvation = -27705.999274 eV Core-core repulsion = 23481.871876 eV Total energy + Delta-G solvation = -4224.127398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.99210 -41.22182 -40.93698 -38.70256 -38.30219 -35.87928 -34.86309 -33.58099 -31.89650 -31.08389 -30.66424 -29.73902 -28.20186 -26.03840 -25.17344 -24.14047 -23.65246 -22.41534 -21.37115 -20.79997 -19.62260 -19.51608 -18.36577 -17.57260 -17.48479 -17.18221 -17.14435 -16.94247 -16.69346 -16.38895 -16.32613 -15.91262 -15.55967 -15.44724 -14.95348 -14.73421 -14.67880 -14.58819 -13.99347 -13.74210 -13.54797 -13.30355 -13.18953 -13.12145 -13.08481 -12.98346 -12.64786 -12.48833 -12.33430 -12.25473 -12.02386 -11.88248 -11.86056 -11.77277 -11.56905 -11.27678 -10.94934 -10.90362 -10.12003 -9.93249 -9.32875 -9.14440 -8.38054 -5.32658 0.09373 0.27150 1.58949 1.66636 1.68939 1.84838 1.86490 2.30654 2.57617 2.73553 3.33217 3.41083 3.62596 3.75296 3.79537 3.82654 3.92822 3.97542 3.98976 3.99478 4.12367 4.16285 4.23083 4.38289 4.41403 4.46323 4.48289 4.52035 4.60236 4.68250 4.79397 4.88017 4.96902 4.99173 5.05592 5.08100 5.09437 5.18467 5.19157 5.24910 5.33258 5.49801 5.55705 5.62189 5.71767 6.35162 6.49781 6.59243 7.09511 7.30425 7.99936 8.10520 9.13534 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034882 B = 0.001420 C = 0.001406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.515820 B =19715.617659 C =19906.725605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.169 3.831 3 H 0.044 0.956 4 N -0.747 5.747 5 C -0.328 4.328 6 H 0.069 0.931 7 C -0.106 4.106 8 N -0.977 5.977 9 Si 1.127 2.873 10 H -0.296 1.296 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.148 3.852 14 H 0.050 0.950 15 C -0.149 4.149 16 N -0.707 5.707 17 C 0.504 3.496 18 O -0.593 6.593 19 C -0.123 4.123 20 C -0.103 4.103 21 C 0.060 3.940 22 O -0.334 6.334 23 C 0.147 3.853 24 C -0.216 4.216 25 C -0.044 4.044 26 C -0.195 4.195 27 C 0.118 3.882 28 F -0.146 7.146 29 C -0.215 4.215 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.362 0.638 34 H 0.243 0.757 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.416 0.584 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.163 0.837 46 H 0.171 0.829 47 H 0.155 0.845 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.736 11.415 -31.101 35.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.061 3.939 3 H 0.062 0.938 4 N -0.391 5.391 5 C -0.460 4.460 6 H 0.087 0.913 7 C -0.297 4.297 8 N -0.625 5.625 9 Si 0.952 3.048 10 H -0.222 1.222 11 H -0.206 1.206 12 H -0.201 1.201 13 C 0.042 3.958 14 H 0.068 0.932 15 C -0.208 4.208 16 N -0.361 5.361 17 C 0.293 3.707 18 O -0.473 6.473 19 C -0.162 4.162 20 C -0.141 4.141 21 C -0.015 4.015 22 O -0.248 6.248 23 C 0.101 3.899 24 C -0.235 4.235 25 C -0.062 4.062 26 C -0.214 4.214 27 C 0.099 3.901 28 F -0.124 7.124 29 C -0.234 4.234 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.196 0.804 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.255 0.745 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.181 0.819 46 H 0.188 0.812 47 H 0.172 0.828 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.410 11.005 -29.529 33.187 hybrid contribution 0.067 -0.534 -1.458 1.554 sum -10.342 10.471 -30.986 34.304 Atomic orbital electron populations 1.22330 0.96240 1.01596 1.01392 1.20495 0.94061 0.94672 0.84719 0.93754 1.42679 1.79888 1.09826 1.06750 1.20381 1.40110 0.95457 0.90030 0.91263 1.27170 0.99660 0.97577 1.05245 1.70998 1.54036 1.09527 1.27934 0.82631 0.76970 0.73435 0.71746 1.22203 1.20601 1.20082 1.20817 0.97107 0.93070 0.84804 0.93157 1.22027 1.02433 0.95502 1.00820 1.46017 1.26369 1.56547 1.07178 1.21477 0.84245 0.79333 0.85694 1.90723 1.25063 1.45177 1.86345 1.21538 1.01073 1.04417 0.89185 1.21156 0.99373 1.01657 0.91922 1.23041 0.93636 1.02128 0.82660 1.86057 1.49942 1.73055 1.15754 1.18787 0.93172 0.92901 0.84996 1.21714 0.96983 1.03431 1.01354 1.21237 0.99442 0.95423 0.90115 1.21384 0.94414 1.03439 1.02177 1.17550 0.91198 0.99375 0.81991 1.91492 1.75467 1.93741 1.51734 1.20389 1.03669 1.08557 0.90799 0.94158 0.89786 0.93082 0.80419 0.94703 0.92918 0.93609 0.90560 0.74454 0.84870 0.85157 0.92324 0.92114 0.89041 0.89203 0.81944 0.81151 0.82772 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.63 9.01 71.98 0.65 -3.98 16 2 C 0.17 6.25 2.93 44.99 0.13 6.38 16 3 H 0.04 1.71 8.08 -2.38 -0.02 1.69 16 4 N -0.75 -36.62 5.03 -322.94 -1.62 -38.25 16 5 C -0.33 -18.09 9.93 84.03 0.83 -17.26 16 6 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 7 C -0.11 -6.09 5.50 84.86 0.47 -5.62 16 8 N -0.98 -61.34 13.70 21.65 0.30 -61.05 16 9 Si 1.13 51.56 29.92 68.60 2.05 53.62 16 10 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 13 C 0.15 4.89 2.62 44.99 0.12 5.00 16 14 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 15 C -0.15 -4.87 9.00 71.98 0.65 -4.22 16 16 N -0.71 -16.12 4.99 -442.53 -2.21 -18.33 16 17 C 0.50 11.96 7.79 87.66 0.68 12.64 16 18 O -0.59 -20.78 15.64 -3.03 -0.05 -20.83 16 19 C -0.12 -1.39 5.70 29.85 0.17 -1.22 16 20 C -0.10 -1.60 4.87 30.59 0.15 -1.45 16 21 C 0.06 0.61 4.74 71.98 0.34 0.95 16 22 O -0.33 -5.92 10.14 -92.37 -0.94 -6.86 16 23 C 0.15 2.34 6.68 22.50 0.15 2.49 16 24 C -0.22 -2.08 9.04 22.37 0.20 -1.88 16 25 C -0.04 -0.34 10.04 22.25 0.22 -0.11 16 26 C -0.20 -2.15 10.02 22.33 0.22 -1.93 16 27 C 0.12 1.94 7.30 22.36 0.16 2.10 16 28 F -0.15 -2.72 17.27 44.97 0.78 -1.94 16 29 C -0.21 -3.84 9.97 22.41 0.22 -3.62 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.64 6.29 -2.39 -0.02 1.63 16 32 H 0.05 1.54 6.57 -2.38 -0.02 1.53 16 33 H 0.36 18.72 4.60 -92.71 -0.43 18.30 16 34 H 0.24 15.23 6.77 -92.71 -0.63 14.60 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.72 6.29 -2.39 -0.02 1.71 16 37 H 0.08 2.17 6.57 -2.39 -0.02 2.15 16 38 H 0.42 6.34 6.58 -92.71 -0.61 5.73 16 39 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 42 H 0.06 1.21 8.10 -2.38 -0.02 1.20 16 43 H 0.09 0.50 7.65 -2.39 -0.02 0.48 16 44 H 0.09 0.52 7.68 -2.38 -0.02 0.50 16 45 H 0.16 0.60 6.30 -2.91 -0.02 0.58 16 46 H 0.17 0.11 8.06 -2.91 -0.02 0.08 16 47 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 48 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -79.69 394.86 3.78 -75.91 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.09 Total: 29.44 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 5.38 Total: -11.72 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -3.54 Total: -117.62 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.98 Total: -27.69 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.62 kcal Total: -79.69 3.78 -75.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329195947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.769 kcal (2) G-P(sol) polarization free energy of solvation -79.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds