Wall clock time and date at job start Tue Mar 31 2020 20:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 N 1.46504 * 109.46783 * 119.99750 * 2 1 3 5 5 C 1.36943 * 119.99781 * 274.99955 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00081 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99814 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47118 * 90.00183 * 9 7 5 11 11 H 1.48498 * 109.47011 * 210.00042 * 9 7 5 12 12 H 1.48499 * 109.47134 * 329.99663 * 9 7 5 13 13 C 1.52995 * 109.47337 * 239.99704 * 2 1 3 14 14 H 1.09007 * 109.47080 * 299.99517 * 13 2 1 15 15 C 1.53000 * 109.47023 * 180.02562 * 13 2 1 16 16 N 1.46499 * 109.47455 * 60.00113 * 13 2 1 17 17 C 1.34777 * 120.00199 * 205.00257 * 16 13 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 13 20 20 C 1.52996 * 109.47159 * 179.72352 * 19 17 16 21 21 C 1.52994 * 109.47118 * 179.97438 * 20 19 17 22 22 O 1.42906 * 109.47097 * 179.97438 * 21 20 19 23 23 C 1.35897 * 117.00053 * 179.97438 * 22 21 20 24 24 C 1.38767 * 120.04012 * 359.73081 * 23 22 21 25 25 C 1.38143 * 119.99283 * 179.73965 * 24 23 22 26 26 C 1.38250 * 120.07594 * 0.53307 * 25 24 23 27 27 C 1.38474 * 120.08843 * 359.74205 * 26 25 24 28 28 F 1.35106 * 120.00070 * 180.02562 * 27 26 25 29 29 C 1.38385 * 120.00634 * 359.97438 * 27 26 25 30 30 H 1.08999 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47768 * 299.99985 * 1 2 3 32 32 H 1.09007 * 109.47256 * 60.00599 * 1 2 3 33 33 H 0.96991 * 120.00424 * 95.00767 * 4 2 1 34 34 H 0.97008 * 120.00329 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46925 * 299.99562 * 15 13 2 36 36 H 1.08998 * 109.47598 * 59.99967 * 15 13 2 37 37 H 1.09005 * 109.47473 * 179.97438 * 15 13 2 38 38 H 0.97000 * 119.99484 * 24.99354 * 16 13 2 39 39 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 40 40 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 41 41 H 1.09004 * 109.47066 * 299.99797 * 20 19 17 42 42 H 1.09000 * 109.47234 * 59.99288 * 20 19 17 43 43 H 1.08998 * 109.46965 * 299.99512 * 21 20 19 44 44 H 1.09003 * 109.47184 * 60.00331 * 21 20 19 45 45 H 1.07995 * 120.00743 * 359.97438 * 24 23 22 46 46 H 1.07996 * 119.95860 * 180.27270 * 25 24 23 47 47 H 1.08002 * 119.95596 * 179.76357 * 26 25 24 48 48 H 1.07993 * 120.04445 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8917 1.0405 2.4243 7 6 2.6121 -0.6615 3.5092 8 7 2.7373 -0.0050 4.6430 9 14 3.0577 -2.4736 3.4251 10 1 4.4905 -2.6147 3.0613 11 1 2.8185 -3.1041 4.7481 12 1 2.2182 -3.1427 2.3990 13 6 2.0400 -0.7213 -1.2491 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7218 -1.2487 16 7 1.5518 -0.0308 -2.4454 17 6 1.4231 -0.7032 -3.6063 18 8 1.7119 -1.8799 -3.6608 19 6 0.9267 0.0086 -4.8384 20 6 0.8805 -0.9732 -6.0109 21 6 0.3760 -0.2506 -7.2615 22 8 0.3334 -1.1676 -8.3568 23 6 -0.0962 -0.6823 -9.5513 24 6 -0.4745 0.6479 -9.6652 25 6 -0.9060 1.1414 -10.8812 26 6 -0.9720 0.3088 -11.9828 27 6 -0.6007 -1.0206 -11.8715 28 9 -0.6654 -1.8326 -12.9494 29 6 -0.1624 -1.5173 -10.6565 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 2.2490 -1.6316 1.1528 34 1 3.0606 -0.4622 5.4351 35 1 3.9337 0.3057 -1.2486 36 1 3.9330 -1.2358 -0.3588 37 1 3.9335 -1.2361 -2.1385 38 1 1.3210 0.9104 -2.4018 39 1 -0.0733 0.4008 -4.6533 40 1 1.6006 0.8308 -5.0792 41 1 1.8806 -1.3654 -6.1960 42 1 0.2067 -1.7954 -5.7699 43 1 -0.6241 0.1411 -7.0761 44 1 1.0496 0.5717 -7.5026 45 1 -0.4280 1.2982 -8.8043 46 1 -1.1961 2.1779 -10.9702 47 1 -1.3133 0.6958 -12.9316 48 1 0.1277 -2.5538 -10.5691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329195948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:12 Heat of formation + Delta-G solvation = -94.336396 kcal Electronic energy + Delta-G solvation = -27731.496034 eV Core-core repulsion = 23508.294216 eV Total energy + Delta-G solvation = -4223.201818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.37374 -40.62320 -39.88663 -37.87520 -37.01787 -34.20550 -34.05270 -31.88421 -31.36013 -30.34924 -29.85871 -28.93931 -27.48916 -24.02474 -23.79065 -23.30549 -22.46847 -21.61470 -20.38535 -20.04558 -19.03065 -17.92685 -17.32148 -16.90953 -16.87395 -16.57762 -16.43628 -16.06333 -15.79714 -15.42187 -14.86829 -14.55449 -14.28440 -14.17140 -13.97414 -13.69554 -13.44359 -13.17740 -12.97241 -12.70843 -12.64883 -12.53322 -12.47907 -12.17633 -11.95450 -11.87693 -11.68899 -11.39911 -11.36459 -11.13923 -11.03676 -10.94615 -10.81696 -10.33613 -10.00305 -9.84177 -9.62747 -9.40690 -9.10106 -8.87646 -8.81580 -7.34491 -5.82121 -3.18664 0.60571 0.77313 2.46166 2.63429 3.06985 3.23248 3.35864 3.39502 3.44142 3.85430 4.17920 4.40724 4.43565 4.44680 4.49649 4.55299 4.59839 4.70669 4.85829 4.91084 4.92707 4.99981 5.12342 5.23503 5.35129 5.38762 5.42363 5.56334 5.60053 5.67214 5.67274 5.68410 5.79143 5.87687 5.96084 6.04825 6.19934 6.20907 6.24335 6.33510 6.47555 6.62870 6.76409 6.84929 6.88828 7.55443 7.91917 8.25203 8.36248 9.13793 9.86468 10.05196 11.35823 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.036789 B = 0.001481 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.915197 B =18907.277042 C =19316.914059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.174 3.826 3 H 0.059 0.941 4 N -0.742 5.742 5 C -0.244 4.244 6 H 0.091 0.909 7 C 0.008 3.992 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.132 3.868 14 H 0.083 0.917 15 C -0.154 4.154 16 N -0.717 5.717 17 C 0.512 3.488 18 O -0.541 6.541 19 C -0.138 4.138 20 C -0.104 4.104 21 C 0.059 3.941 22 O -0.307 6.307 23 C 0.164 3.836 24 C -0.221 4.221 25 C -0.050 4.050 26 C -0.195 4.195 27 C 0.139 3.861 28 F -0.134 7.134 29 C -0.193 4.193 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.362 0.638 34 H 0.260 0.740 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.399 0.601 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 4.541 -32.691 33.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.063 3.937 3 H 0.077 0.923 4 N -0.386 5.386 5 C -0.374 4.374 6 H 0.109 0.891 7 C -0.188 4.188 8 N -0.580 5.580 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.027 3.973 14 H 0.102 0.898 15 C -0.212 4.212 16 N -0.368 5.368 17 C 0.298 3.702 18 O -0.418 6.418 19 C -0.178 4.178 20 C -0.142 4.142 21 C -0.016 4.016 22 O -0.220 6.220 23 C 0.118 3.882 24 C -0.240 4.240 25 C -0.068 4.068 26 C -0.214 4.214 27 C 0.119 3.881 28 F -0.113 7.113 29 C -0.212 4.212 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.195 0.805 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.233 0.767 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.154 0.846 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.130 3.636 -32.485 33.456 hybrid contribution 0.114 -0.718 0.049 0.728 sum -7.016 2.918 -32.436 33.314 Atomic orbital electron populations 1.22417 0.98572 1.01125 1.00344 1.20359 0.92275 0.95862 0.85168 0.92264 1.42655 1.79871 1.09361 1.06701 1.19012 1.37338 0.95524 0.85538 0.89144 1.24639 1.01214 0.97447 0.95509 1.69691 1.52363 1.35629 1.00271 0.86605 0.78580 0.86743 0.76954 1.20971 1.21691 1.20222 1.21350 0.94427 0.97593 0.83949 0.89845 1.22061 0.94978 1.02128 1.02062 1.46046 1.66973 1.14003 1.09784 1.20431 0.77875 0.87415 0.84523 1.90725 1.49994 1.16086 1.85033 1.21521 1.03641 0.99500 0.93131 1.21233 1.04192 0.98452 0.90366 1.22945 1.01431 0.92126 0.85110 1.86098 1.80361 1.39358 1.16225 1.18628 0.92480 0.91627 0.85497 1.21378 1.07693 0.94961 0.99945 1.20811 0.95153 0.99682 0.91136 1.21067 1.07054 0.92315 1.01010 1.17301 0.99364 0.88392 0.83010 1.91527 1.93889 1.72644 1.53234 1.20296 1.08762 1.01804 0.90336 0.93542 0.92159 0.94271 0.80461 0.92996 0.92582 0.90802 0.93213 0.76677 0.88538 0.88562 0.89803 0.89780 0.91493 0.91520 0.84605 0.84578 0.84578 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.33 37.16 0.35 -2.32 16 2 C 0.17 3.04 2.52 -67.93 -0.17 2.87 16 3 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 4 N -0.74 -16.61 4.23 -53.43 -0.23 -16.84 16 5 C -0.24 -6.58 10.41 -15.06 -0.16 -6.74 16 6 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 7 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 8 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 9 Si 0.88 21.77 27.74 -169.99 -4.71 17.05 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.28 -6.49 6.52 56.52 0.37 -6.13 16 13 C 0.13 2.02 2.20 -67.93 -0.15 1.87 16 14 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 15 C -0.15 -2.40 9.33 37.16 0.35 -2.06 16 16 N -0.72 -8.26 4.38 -53.81 -0.24 -8.49 16 17 C 0.51 6.03 7.79 -10.98 -0.09 5.94 16 18 O -0.54 -8.78 15.65 5.55 0.09 -8.70 16 19 C -0.14 -0.95 5.70 -27.88 -0.16 -1.11 16 20 C -0.10 -0.83 4.87 -26.74 -0.13 -0.96 16 21 C 0.06 0.37 4.74 37.15 0.18 0.54 16 22 O -0.31 -2.74 10.14 -19.42 -0.20 -2.93 16 23 C 0.16 1.34 6.68 -39.23 -0.26 1.08 16 24 C -0.22 -1.37 9.04 -39.42 -0.36 -1.73 16 25 C -0.05 -0.27 10.04 -39.61 -0.40 -0.66 16 26 C -0.20 -1.24 10.02 -39.49 -0.40 -1.63 16 27 C 0.14 1.12 7.30 -39.44 -0.29 0.83 16 28 F -0.13 -1.19 17.27 2.25 0.04 -1.15 16 29 C -0.19 -1.62 9.97 -39.37 -0.39 -2.01 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 33 H 0.36 8.18 5.44 -40.82 -0.22 7.95 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.29 7.44 -51.93 -0.39 0.90 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.40 3.46 8.39 -40.82 -0.34 3.11 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 42 H 0.08 0.81 8.10 -51.93 -0.42 0.38 16 43 H 0.07 0.31 7.65 -51.93 -0.40 -0.08 16 44 H 0.07 0.31 7.68 -51.93 -0.40 -0.09 16 45 H 0.14 0.57 6.30 -52.49 -0.33 0.24 16 46 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 47 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 48 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 401.14 15.07 6.05 6.05 Total: -1.00 -33.56 401.14 -8.11 -41.67 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -7.51 Total: 7.12 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -2.17 Total: -5.96 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.31 Total: -53.16 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.11 Total: -11.63 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.56 -8.11 -41.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329195948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.665 kcal (2) G-P(sol) polarization free energy of solvation -33.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds