Wall clock time and date at job start Tue Mar 31 2020 20:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 N 1.46504 * 109.46783 * 119.99750 * 2 1 3 5 5 C 1.36943 * 119.99781 * 274.99955 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00081 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99814 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47118 * 90.00183 * 9 7 5 11 11 H 1.48498 * 109.47011 * 210.00042 * 9 7 5 12 12 H 1.48499 * 109.47134 * 329.99663 * 9 7 5 13 13 C 1.52995 * 109.47337 * 239.99704 * 2 1 3 14 14 H 1.09007 * 109.47080 * 299.99517 * 13 2 1 15 15 C 1.53000 * 109.47023 * 180.02562 * 13 2 1 16 16 N 1.46499 * 109.47455 * 60.00113 * 13 2 1 17 17 C 1.34777 * 120.00199 * 205.00257 * 16 13 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 13 20 20 C 1.52996 * 109.47159 * 179.72352 * 19 17 16 21 21 C 1.52994 * 109.47118 * 179.97438 * 20 19 17 22 22 O 1.42906 * 109.47097 * 179.97438 * 21 20 19 23 23 C 1.35897 * 117.00053 * 179.97438 * 22 21 20 24 24 C 1.38767 * 120.04012 * 359.73081 * 23 22 21 25 25 C 1.38143 * 119.99283 * 179.73965 * 24 23 22 26 26 C 1.38250 * 120.07594 * 0.53307 * 25 24 23 27 27 C 1.38474 * 120.08843 * 359.74205 * 26 25 24 28 28 F 1.35106 * 120.00070 * 180.02562 * 27 26 25 29 29 C 1.38385 * 120.00634 * 359.97438 * 27 26 25 30 30 H 1.08999 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47768 * 299.99985 * 1 2 3 32 32 H 1.09007 * 109.47256 * 60.00599 * 1 2 3 33 33 H 0.96991 * 120.00424 * 95.00767 * 4 2 1 34 34 H 0.97008 * 120.00329 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46925 * 299.99562 * 15 13 2 36 36 H 1.08998 * 109.47598 * 59.99967 * 15 13 2 37 37 H 1.09005 * 109.47473 * 179.97438 * 15 13 2 38 38 H 0.97000 * 119.99484 * 24.99354 * 16 13 2 39 39 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 40 40 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 41 41 H 1.09004 * 109.47066 * 299.99797 * 20 19 17 42 42 H 1.09000 * 109.47234 * 59.99288 * 20 19 17 43 43 H 1.08998 * 109.46965 * 299.99512 * 21 20 19 44 44 H 1.09003 * 109.47184 * 60.00331 * 21 20 19 45 45 H 1.07995 * 120.00743 * 359.97438 * 24 23 22 46 46 H 1.07996 * 119.95860 * 180.27270 * 25 24 23 47 47 H 1.08002 * 119.95596 * 179.76357 * 26 25 24 48 48 H 1.07993 * 120.04445 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8917 1.0405 2.4243 7 6 2.6121 -0.6615 3.5092 8 7 2.7373 -0.0050 4.6430 9 14 3.0577 -2.4736 3.4251 10 1 4.4905 -2.6147 3.0613 11 1 2.8185 -3.1041 4.7481 12 1 2.2182 -3.1427 2.3990 13 6 2.0400 -0.7213 -1.2491 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7218 -1.2487 16 7 1.5518 -0.0308 -2.4454 17 6 1.4231 -0.7032 -3.6063 18 8 1.7119 -1.8799 -3.6608 19 6 0.9267 0.0086 -4.8384 20 6 0.8805 -0.9732 -6.0109 21 6 0.3760 -0.2506 -7.2615 22 8 0.3334 -1.1676 -8.3568 23 6 -0.0962 -0.6823 -9.5513 24 6 -0.4745 0.6479 -9.6652 25 6 -0.9060 1.1414 -10.8812 26 6 -0.9720 0.3088 -11.9828 27 6 -0.6007 -1.0206 -11.8715 28 9 -0.6654 -1.8326 -12.9494 29 6 -0.1624 -1.5173 -10.6565 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 2.2490 -1.6316 1.1528 34 1 3.0606 -0.4622 5.4351 35 1 3.9337 0.3057 -1.2486 36 1 3.9330 -1.2358 -0.3588 37 1 3.9335 -1.2361 -2.1385 38 1 1.3210 0.9104 -2.4018 39 1 -0.0733 0.4008 -4.6533 40 1 1.6006 0.8308 -5.0792 41 1 1.8806 -1.3654 -6.1960 42 1 0.2067 -1.7954 -5.7699 43 1 -0.6241 0.1411 -7.0761 44 1 1.0496 0.5717 -7.5026 45 1 -0.4280 1.2982 -8.8043 46 1 -1.1961 2.1779 -10.9702 47 1 -1.3133 0.6958 -12.9316 48 1 0.1277 -2.5538 -10.5691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329195948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:11 Heat of formation + Delta-G solvation = -115.958175 kcal Electronic energy + Delta-G solvation = -27732.433625 eV Core-core repulsion = 23508.294216 eV Total energy + Delta-G solvation = -4224.139409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.98311 -41.18108 -40.85834 -38.54433 -38.23986 -35.64559 -34.81842 -33.66373 -31.92085 -31.35825 -30.70150 -30.47648 -28.13314 -25.70262 -24.68761 -23.96959 -23.44772 -22.30252 -21.64561 -21.15294 -19.84969 -19.53580 -18.16976 -17.51302 -17.45455 -17.23050 -17.08921 -16.89075 -16.68117 -16.38541 -16.14127 -15.83970 -15.42460 -15.12478 -14.81953 -14.70969 -14.58514 -14.46678 -14.21571 -13.78902 -13.72517 -13.42533 -13.16613 -13.06245 -13.01299 -12.96859 -12.77946 -12.59005 -12.46804 -12.31313 -12.20330 -12.09594 -11.86153 -11.80656 -11.54394 -11.46289 -11.03033 -10.84809 -10.06064 -9.92108 -9.31639 -9.31550 -8.01191 -5.33799 0.10437 0.28272 1.39248 1.39270 1.46417 1.73458 1.89371 2.34924 2.48433 2.58697 3.31267 3.34344 3.62832 3.72816 3.75442 3.84418 3.96429 3.99363 4.01708 4.14391 4.17305 4.19718 4.32187 4.40636 4.43704 4.50571 4.51140 4.59159 4.71254 4.78590 4.86809 4.95316 5.00235 5.03091 5.09155 5.09542 5.18676 5.20887 5.27763 5.30189 5.34422 5.50999 5.57763 5.72866 5.79715 6.22572 6.36646 6.66464 7.08151 7.36670 7.84414 8.01278 9.19948 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.036789 B = 0.001481 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.915197 B =18907.277042 C =19316.914059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.170 3.830 3 H 0.064 0.936 4 N -0.747 5.747 5 C -0.220 4.220 6 H 0.066 0.934 7 C -0.058 4.058 8 N -0.981 5.981 9 Si 0.943 3.057 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.258 1.258 13 C 0.146 3.854 14 H 0.063 0.937 15 C -0.149 4.149 16 N -0.706 5.706 17 C 0.508 3.492 18 O -0.591 6.591 19 C -0.124 4.124 20 C -0.102 4.102 21 C 0.059 3.941 22 O -0.334 6.334 23 C 0.148 3.852 24 C -0.216 4.216 25 C -0.045 4.045 26 C -0.196 4.196 27 C 0.118 3.882 28 F -0.146 7.146 29 C -0.214 4.214 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.362 0.638 34 H 0.256 0.744 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.417 0.583 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.163 0.837 46 H 0.170 0.830 47 H 0.154 0.846 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.469 6.566 -35.028 36.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 H 0.082 0.918 4 N -0.391 5.391 5 C -0.351 4.351 6 H 0.084 0.916 7 C -0.250 4.250 8 N -0.632 5.632 9 Si 0.771 3.229 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.183 1.183 13 C 0.039 3.961 14 H 0.081 0.919 15 C -0.208 4.208 16 N -0.358 5.358 17 C 0.296 3.704 18 O -0.472 6.472 19 C -0.163 4.163 20 C -0.140 4.140 21 C -0.016 4.016 22 O -0.247 6.247 23 C 0.102 3.898 24 C -0.235 4.235 25 C -0.063 4.063 26 C -0.215 4.215 27 C 0.099 3.901 28 F -0.124 7.124 29 C -0.234 4.234 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.195 0.805 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.255 0.745 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.180 0.820 46 H 0.188 0.812 47 H 0.172 0.828 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.206 5.695 -34.894 36.296 hybrid contribution 0.404 -1.261 0.686 1.491 sum -7.802 4.434 -34.208 35.366 Atomic orbital electron populations 1.22285 0.97026 1.00895 1.01354 1.20567 0.93169 0.95807 0.84291 0.91772 1.42695 1.80095 1.09389 1.06917 1.18997 1.34595 0.94580 0.86936 0.91627 1.25337 1.02626 1.01660 0.95377 1.69850 1.54858 1.37420 1.01097 0.85589 0.78582 0.81882 0.76800 1.20592 1.22523 1.18334 1.20892 0.94100 0.96549 0.84533 0.91927 1.21997 0.95226 1.02471 1.01064 1.45853 1.66664 1.14746 1.08573 1.21341 0.76618 0.86932 0.85512 1.90718 1.52074 1.18590 1.85786 1.21533 1.06036 0.99182 0.89598 1.21151 1.02360 0.98474 0.92049 1.23055 1.03188 0.91817 0.83503 1.86057 1.80777 1.40892 1.17022 1.18780 0.93359 0.92608 0.85063 1.21713 1.06379 0.94152 1.01241 1.21236 0.93779 1.01007 0.90233 1.21380 1.06208 0.91499 1.02377 1.17552 1.00640 0.89272 0.82675 1.91492 1.94129 1.73154 1.53674 1.20388 1.09903 1.01862 0.91211 0.94378 0.94274 0.90110 0.80497 0.93479 0.91517 0.92954 0.93061 0.74509 0.85174 0.85144 0.92136 0.92186 0.89225 0.89207 0.81957 0.81211 0.82833 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.71 9.33 71.98 0.67 -4.04 16 2 C 0.17 5.68 2.52 44.99 0.11 5.79 16 3 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 4 N -0.75 -32.93 4.23 -322.94 -1.37 -34.29 16 5 C -0.22 -11.92 10.41 84.03 0.87 -11.05 16 6 H 0.07 3.84 8.06 -2.91 -0.02 3.81 16 7 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 8 N -0.98 -61.66 13.97 21.65 0.30 -61.36 16 9 Si 0.94 45.40 27.74 68.60 1.90 47.31 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 12 H -0.26 -11.51 6.52 99.48 0.65 -10.86 16 13 C 0.15 4.21 2.20 44.99 0.10 4.31 16 14 H 0.06 2.13 7.58 -2.38 -0.02 2.11 16 15 C -0.15 -4.47 9.33 71.98 0.67 -3.80 16 16 N -0.71 -14.07 4.38 -442.53 -1.94 -16.01 16 17 C 0.51 10.68 7.79 87.66 0.68 11.36 16 18 O -0.59 -18.81 15.65 -3.04 -0.05 -18.86 16 19 C -0.12 -1.20 5.70 29.85 0.17 -1.03 16 20 C -0.10 -1.44 4.87 30.59 0.15 -1.29 16 21 C 0.06 0.55 4.74 71.98 0.34 0.89 16 22 O -0.33 -5.62 10.14 -92.39 -0.94 -6.55 16 23 C 0.15 2.25 6.68 22.50 0.15 2.40 16 24 C -0.22 -1.98 9.04 22.37 0.20 -1.78 16 25 C -0.04 -0.33 10.04 22.25 0.22 -0.10 16 26 C -0.20 -2.10 10.02 22.33 0.22 -1.87 16 27 C 0.12 1.88 7.30 22.36 0.16 2.05 16 28 F -0.15 -2.66 17.27 44.97 0.78 -1.89 16 29 C -0.21 -3.70 9.97 22.41 0.22 -3.48 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.75 7.45 -2.38 -0.02 1.74 16 33 H 0.36 16.00 5.44 -92.72 -0.50 15.50 16 34 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.79 7.44 -2.39 -0.02 1.77 16 37 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.42 5.37 8.39 -92.71 -0.78 4.59 16 39 H 0.13 0.49 8.14 -2.38 -0.02 0.47 16 40 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.06 1.12 8.10 -2.38 -0.02 1.10 16 42 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 43 H 0.09 0.44 7.65 -2.39 -0.02 0.43 16 44 H 0.09 0.44 7.68 -2.39 -0.02 0.42 16 45 H 0.16 0.54 6.30 -2.91 -0.02 0.52 16 46 H 0.17 0.07 8.06 -2.91 -0.02 0.05 16 47 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 48 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -77.22 401.14 3.75 -73.47 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -0.37 Total: 22.72 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 5.43 Total: -4.54 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -3.00 Total: -111.67 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.98 Total: -25.41 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.31 kcal Total: -77.22 3.75 -73.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329195948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.490 kcal (2) G-P(sol) polarization free energy of solvation -77.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds