Wall clock time and date at job start Tue Mar 31 2020 20:44:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08994 * 109.46974 * 2 1
4 4 N 1.46498 * 109.47180 * 120.00703 * 2 1 3
5 5 C 1.34775 * 119.99685 * 274.99474 * 4 2 1
6 6 O 1.21283 * 120.00424 * 0.02562 * 5 4 2
7 7 C 1.50702 * 119.99786 * 180.02562 * 5 4 2
8 8 C 1.53003 * 109.46878 * 180.02562 * 7 5 4
9 9 C 1.53008 * 109.46693 * 179.97438 * 8 7 5
10 10 O 1.42899 * 109.46691 * 180.02562 * 9 8 7
11 11 C 1.35897 * 116.99793 * 180.02562 * 10 9 8
12 12 C 1.38768 * 120.04417 * 359.72171 * 11 10 9
13 13 C 1.38130 * 119.99459 * 179.74455 * 12 11 10
14 14 C 1.38251 * 120.08409 * 0.53302 * 13 12 11
15 15 C 1.38475 * 120.07852 * 359.74212 * 14 13 12
16 16 F 1.35106 * 119.99660 * 180.02562 * 15 14 13
17 17 C 1.38385 * 120.01044 * 359.97438 * 15 14 13
18 18 C 1.53004 * 109.46769 * 240.00654 * 2 1 3
19 19 H 1.08995 * 109.47216 * 299.99814 * 18 2 1
20 20 C 1.52999 * 109.47083 * 179.97438 * 18 2 1
21 21 N 1.46498 * 109.47065 * 59.99703 * 18 2 1
22 22 C 1.36943 * 119.99752 * 204.72207 * 21 18 2
23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 18
24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 18
25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21
26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21
27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22
28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22
29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22
30 30 H 1.09003 * 109.46657 * 299.99141 * 1 2 3
31 31 H 1.08994 * 109.47387 * 59.99348 * 1 2 3
32 32 H 1.08995 * 109.47099 * 179.97438 * 1 2 3
33 33 H 0.97000 * 119.99792 * 95.00136 * 4 2 1
34 34 H 1.09004 * 109.46965 * 300.00190 * 7 5 4
35 35 H 1.08994 * 109.47464 * 60.00281 * 7 5 4
36 36 H 1.08998 * 109.46943 * 299.99345 * 8 7 5
37 37 H 1.08994 * 109.47547 * 60.00052 * 8 7 5
38 38 H 1.08998 * 109.47034 * 299.99464 * 9 8 7
39 39 H 1.09002 * 109.46785 * 60.00134 * 9 8 7
40 40 H 1.08003 * 120.00005 * 0.02562 * 12 11 10
41 41 H 1.08007 * 119.96076 * 180.27274 * 13 12 11
42 42 H 1.07993 * 119.95981 * 179.76355 * 14 13 12
43 43 H 1.07993 * 120.04445 * 180.02562 * 17 15 14
44 44 H 1.08996 * 109.47245 * 179.97438 * 20 18 2
45 45 H 1.08995 * 109.47098 * 300.00077 * 20 18 2
46 46 H 1.09003 * 109.47054 * 59.99725 * 20 18 2
47 47 H 0.97001 * 120.00384 * 25.00562 * 21 18 2
48 48 H 0.96999 * 119.99739 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0184 -0.6907 1.1961
5 6 2.1472 -0.0185 2.3570
6 8 1.8584 1.1582 2.4118
7 6 2.6501 -0.7289 3.5873
8 6 2.7009 0.2540 4.7587
9 6 3.2109 -0.4674 6.0080
10 8 3.2578 0.4504 7.1022
11 6 3.6926 -0.0337 8.2953
12 6 4.0609 -1.3665 8.4116
13 6 4.5077 -1.8562 9.6234
14 6 4.5782 -1.0227 10.7242
15 6 4.2060 0.3064 10.6132
16 9 4.2760 1.1196 11.6899
17 6 3.7634 0.8023 9.3994
18 6 2.0399 -0.7211 -1.2494
19 1 1.6766 -1.7488 -1.2495
20 6 3.5699 -0.7206 -1.2498
21 7 1.5515 -0.0304 -2.4454
22 6 1.4261 -0.7121 -3.6265
23 1 1.6830 -1.7600 -3.6750
24 6 0.9687 -0.0563 -4.7612
25 7 0.6561 1.2210 -4.7020
26 14 0.7969 -0.9863 -6.3720
27 1 1.2091 -2.3991 -6.1743
28 1 -0.6181 -0.9421 -6.8207
29 1 1.6625 -0.3571 -7.4017
30 1 -0.3633 0.5137 0.8901
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3633 -1.0276 -0.0005
33 1 2.2491 -1.6319 1.1523
34 1 1.9778 -1.5512 3.8323
35 1 3.6493 -1.1206 3.3977
36 1 3.3730 1.0765 4.5140
37 1 1.7015 0.6455 4.9483
38 1 2.5385 -1.2897 6.2526
39 1 4.2103 -0.8592 5.8187
40 1 4.0026 -2.0198 7.5535
41 1 4.7984 -2.8926 9.7123
42 1 4.9241 -1.4087 11.6716
43 1 3.4735 1.8389 9.3122
44 1 3.9332 -1.2347 -2.1396
45 1 3.9329 0.3071 -1.2499
46 1 3.9337 -1.2343 -0.3598
47 1 1.3209 0.9108 -2.4018
48 1 0.3362 1.6792 -5.4948
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001329195950.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:44:17
Heat of formation + Delta-G solvation = -98.417732 kcal
Electronic energy + Delta-G solvation = -27654.709332 eV
Core-core repulsion = 23431.330534 eV
Total energy + Delta-G solvation = -4223.378798 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-49.35200 -40.59296 -39.78769 -37.84189 -36.84711 -34.13273 -33.94226 -31.81658
-31.32356 -30.28926 -29.64217 -28.44556 -27.40269 -24.04206 -23.83366 -23.29921
-22.53182 -21.61788 -20.26488 -19.94156 -18.98687 -17.49305 -17.28187 -16.86861
-16.84764 -16.54654 -16.39673 -16.03273 -15.60663 -15.33350 -14.83601 -14.65863
-14.24697 -14.02415 -13.73181 -13.65788 -13.32856 -13.15212 -13.07118 -12.63672
-12.60703 -12.48837 -12.39897 -11.91918 -11.87031 -11.74495 -11.61403 -11.33306
-11.20475 -10.99423 -10.98643 -10.87217 -10.72009 -10.21684 -9.93141 -9.84521
-9.63385 -9.38404 -9.05225 -8.79040 -8.78762 -7.02327 -5.80980 -3.10761
0.62876 0.79657 2.49972 2.72370 3.09308 3.32169 3.40198 3.46024
3.48052 3.87887 4.20572 4.44614 4.47085 4.48940 4.52138 4.56611
4.64046 4.74499 4.88137 4.96095 4.97387 5.06155 5.22939 5.34587
5.44551 5.46314 5.58634 5.64553 5.70793 5.70925 5.74163 5.81405
5.86785 5.93037 6.07085 6.19360 6.22886 6.35701 6.39118 6.49028
6.59292 6.77982 6.87960 6.92203 6.99354 7.65294 7.65540 8.34105
8.37292 9.48089 10.03417 10.38258 11.41418
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.042387 B = 0.001410 C = 0.001387
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 660.427880 B =19854.031923 C =20175.883549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.135 3.865
3 H 0.084 0.916
4 N -0.717 5.717
5 C 0.511 3.489
6 O -0.540 6.540
7 C -0.138 4.138
8 C -0.105 4.105
9 C 0.059 3.941
10 O -0.307 6.307
11 C 0.164 3.836
12 C -0.221 4.221
13 C -0.050 4.050
14 C -0.196 4.196
15 C 0.139 3.861
16 F -0.135 7.135
17 C -0.193 4.193
18 C 0.169 3.831
19 H 0.050 0.950
20 C -0.164 4.164
21 N -0.718 5.718
22 C -0.240 4.240
23 H 0.071 0.929
24 C -0.011 4.011
25 N -0.930 5.930
26 Si 0.907 3.093
27 H -0.281 1.281
28 H -0.292 1.292
29 H -0.292 1.292
30 H 0.046 0.954
31 H 0.080 0.920
32 H 0.050 0.950
33 H 0.397 0.603
34 H 0.095 0.905
35 H 0.095 0.905
36 H 0.084 0.916
37 H 0.083 0.917
38 H 0.066 0.934
39 H 0.067 0.933
40 H 0.136 0.864
41 H 0.136 0.864
42 H 0.136 0.864
43 H 0.144 0.856
44 H 0.054 0.946
45 H 0.047 0.953
46 H 0.035 0.965
47 H 0.385 0.615
48 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.752 -8.687 29.779 31.974
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.030 3.970
3 H 0.103 0.897
4 N -0.368 5.368
5 C 0.296 3.704
6 O -0.417 6.417
7 C -0.178 4.178
8 C -0.142 4.142
9 C -0.016 4.016
10 O -0.220 6.220
11 C 0.118 3.882
12 C -0.240 4.240
13 C -0.068 4.068
14 C -0.215 4.215
15 C 0.119 3.881
16 F -0.113 7.113
17 C -0.212 4.212
18 C 0.058 3.942
19 H 0.068 0.932
20 C -0.224 4.224
21 N -0.360 5.360
22 C -0.371 4.371
23 H 0.089 0.911
24 C -0.208 4.208
25 N -0.578 5.578
26 Si 0.738 3.262
27 H -0.206 1.206
28 H -0.219 1.219
29 H -0.219 1.219
30 H 0.065 0.935
31 H 0.099 0.901
32 H 0.069 0.931
33 H 0.231 0.769
34 H 0.113 0.887
35 H 0.114 0.886
36 H 0.103 0.897
37 H 0.102 0.898
38 H 0.085 0.915
39 H 0.085 0.915
40 H 0.154 0.846
41 H 0.154 0.846
42 H 0.154 0.846
43 H 0.162 0.838
44 H 0.073 0.927
45 H 0.066 0.934
46 H 0.054 0.946
47 H 0.220 0.780
48 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 7.450 -7.722 29.622 31.506
hybrid contribution 0.057 -0.733 -0.868 1.137
sum 7.507 -8.455 28.754 30.897
Atomic orbital electron populations
1.22045 0.94961 1.01700 1.02338 1.21337 0.94420 0.97592 0.83622
0.89744 1.46090 1.66941 1.13904 1.09913 1.20411 0.78008 0.87438
0.84517 1.90730 1.50012 1.16030 1.84966 1.21524 1.03521 0.99483
0.93266 1.21237 1.04177 0.98470 0.90361 1.22951 1.01393 0.92107
0.85152 1.86101 1.80167 1.39370 1.16369 1.18632 0.92432 0.91606
0.85532 1.21376 1.07681 0.94905 1.00029 1.20805 0.95136 0.99684
0.91173 1.21062 1.07092 0.92336 1.00984 1.17302 0.99356 0.88367
0.83044 1.91527 1.93869 1.72573 1.53332 1.20300 1.08724 1.01834
0.90344 1.20392 0.92069 0.95552 0.86198 0.93213 1.22448 0.99102
1.01091 0.99783 1.42303 1.78196 1.10773 1.04762 1.19236 1.36971
0.93890 0.86980 0.91100 1.24744 1.02035 0.95952 0.98043 1.69675
1.50730 1.08594 1.28802 0.86130 0.77312 0.78733 0.84050 1.20593
1.21871 1.21879 0.93485 0.90134 0.93127 0.76901 0.88667 0.88623
0.89748 0.89789 0.91549 0.91517 0.84612 0.84602 0.84595 0.83800
0.92669 0.93430 0.94624 0.78047 0.93478
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.57 9.33 37.16 0.35 -2.22 16
2 C 0.13 2.21 2.21 -67.93 -0.15 2.06 16
3 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16
4 N -0.72 -8.85 4.38 -53.81 -0.24 -9.09 16
5 C 0.51 6.41 7.79 -10.99 -0.09 6.33 16
6 O -0.54 -9.24 15.65 5.55 0.09 -9.16 16
7 C -0.14 -1.03 5.70 -27.88 -0.16 -1.19 16
8 C -0.10 -0.89 4.87 -26.73 -0.13 -1.02 16
9 C 0.06 0.39 4.74 37.16 0.18 0.56 16
10 O -0.31 -2.83 10.14 -19.42 -0.20 -3.03 16
11 C 0.16 1.39 6.68 -39.22 -0.26 1.13 16
12 C -0.22 -1.42 9.04 -39.42 -0.36 -1.78 16
13 C -0.05 -0.28 10.04 -39.62 -0.40 -0.67 16
14 C -0.20 -1.27 10.02 -39.49 -0.40 -1.67 16
15 C 0.14 1.14 7.30 -39.44 -0.29 0.86 16
16 F -0.13 -1.21 17.27 2.25 0.04 -1.17 16
17 C -0.19 -1.66 9.97 -39.37 -0.39 -2.06 16
18 C 0.17 3.10 2.52 -67.93 -0.17 2.93 16
19 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16
20 C -0.16 -2.78 9.33 37.16 0.35 -2.44 16
21 N -0.72 -17.12 4.43 -53.43 -0.24 -17.36 16
22 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16
23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16
24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16
25 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16
26 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16
27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
29 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16
30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
31 H 0.08 1.57 7.44 -51.93 -0.39 1.18 16
32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
33 H 0.40 3.73 8.39 -40.82 -0.34 3.39 16
34 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16
35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16
36 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16
37 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16
38 H 0.07 0.33 7.65 -51.93 -0.40 -0.07 16
39 H 0.07 0.34 7.67 -51.93 -0.40 -0.06 16
40 H 0.14 0.60 6.30 -52.48 -0.33 0.27 16
41 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16
42 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16
43 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16
44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16
45 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16
46 H 0.03 0.48 7.45 -51.93 -0.39 0.09 16
47 H 0.39 9.96 7.58 -40.82 -0.31 9.65 16
48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
LS Contribution 404.26 15.07 6.09 6.09
Total: -1.00 -32.65 404.26 -8.47 -41.12
By element:
Atomic # 1 Polarization: 16.24 SS G_CDS: -7.56 Total: 8.68 kcal
Atomic # 6 Polarization: -3.95 SS G_CDS: -2.16 Total: -6.12 kcal
Atomic # 7 Polarization: -53.52 SS G_CDS: 0.25 Total: -53.27 kcal
Atomic # 8 Polarization: -12.08 SS G_CDS: -0.11 Total: -12.19 kcal
Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -32.65 -8.47 -41.12 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001329195950.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.296 kcal
(2) G-P(sol) polarization free energy of solvation -32.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.947 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.418 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds