Wall clock time and date at job start Tue Mar 31 2020 20:44:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08994 * 109.46974 * 2 1
4 4 N 1.46498 * 109.47180 * 120.00703 * 2 1 3
5 5 C 1.34775 * 119.99685 * 274.99474 * 4 2 1
6 6 O 1.21283 * 120.00424 * 0.02562 * 5 4 2
7 7 C 1.50702 * 119.99786 * 180.02562 * 5 4 2
8 8 C 1.53003 * 109.46878 * 180.02562 * 7 5 4
9 9 C 1.53008 * 109.46693 * 179.97438 * 8 7 5
10 10 O 1.42899 * 109.46691 * 180.02562 * 9 8 7
11 11 C 1.35897 * 116.99793 * 180.02562 * 10 9 8
12 12 C 1.38768 * 120.04417 * 359.72171 * 11 10 9
13 13 C 1.38130 * 119.99459 * 179.74455 * 12 11 10
14 14 C 1.38251 * 120.08409 * 0.53302 * 13 12 11
15 15 C 1.38475 * 120.07852 * 359.74212 * 14 13 12
16 16 F 1.35106 * 119.99660 * 180.02562 * 15 14 13
17 17 C 1.38385 * 120.01044 * 359.97438 * 15 14 13
18 18 C 1.53004 * 109.46769 * 240.00654 * 2 1 3
19 19 H 1.08995 * 109.47216 * 299.99814 * 18 2 1
20 20 C 1.52999 * 109.47083 * 179.97438 * 18 2 1
21 21 N 1.46498 * 109.47065 * 59.99703 * 18 2 1
22 22 C 1.36943 * 119.99752 * 204.72207 * 21 18 2
23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 18
24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 18
25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21
26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21
27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22
28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22
29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22
30 30 H 1.09003 * 109.46657 * 299.99141 * 1 2 3
31 31 H 1.08994 * 109.47387 * 59.99348 * 1 2 3
32 32 H 1.08995 * 109.47099 * 179.97438 * 1 2 3
33 33 H 0.97000 * 119.99792 * 95.00136 * 4 2 1
34 34 H 1.09004 * 109.46965 * 300.00190 * 7 5 4
35 35 H 1.08994 * 109.47464 * 60.00281 * 7 5 4
36 36 H 1.08998 * 109.46943 * 299.99345 * 8 7 5
37 37 H 1.08994 * 109.47547 * 60.00052 * 8 7 5
38 38 H 1.08998 * 109.47034 * 299.99464 * 9 8 7
39 39 H 1.09002 * 109.46785 * 60.00134 * 9 8 7
40 40 H 1.08003 * 120.00005 * 0.02562 * 12 11 10
41 41 H 1.08007 * 119.96076 * 180.27274 * 13 12 11
42 42 H 1.07993 * 119.95981 * 179.76355 * 14 13 12
43 43 H 1.07993 * 120.04445 * 180.02562 * 17 15 14
44 44 H 1.08996 * 109.47245 * 179.97438 * 20 18 2
45 45 H 1.08995 * 109.47098 * 300.00077 * 20 18 2
46 46 H 1.09003 * 109.47054 * 59.99725 * 20 18 2
47 47 H 0.97001 * 120.00384 * 25.00562 * 21 18 2
48 48 H 0.96999 * 119.99739 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0184 -0.6907 1.1961
5 6 2.1472 -0.0185 2.3570
6 8 1.8584 1.1582 2.4118
7 6 2.6501 -0.7289 3.5873
8 6 2.7009 0.2540 4.7587
9 6 3.2109 -0.4674 6.0080
10 8 3.2578 0.4504 7.1022
11 6 3.6926 -0.0337 8.2953
12 6 4.0609 -1.3665 8.4116
13 6 4.5077 -1.8562 9.6234
14 6 4.5782 -1.0227 10.7242
15 6 4.2060 0.3064 10.6132
16 9 4.2760 1.1196 11.6899
17 6 3.7634 0.8023 9.3994
18 6 2.0399 -0.7211 -1.2494
19 1 1.6766 -1.7488 -1.2495
20 6 3.5699 -0.7206 -1.2498
21 7 1.5515 -0.0304 -2.4454
22 6 1.4261 -0.7121 -3.6265
23 1 1.6830 -1.7600 -3.6750
24 6 0.9687 -0.0563 -4.7612
25 7 0.6561 1.2210 -4.7020
26 14 0.7969 -0.9863 -6.3720
27 1 1.2091 -2.3991 -6.1743
28 1 -0.6181 -0.9421 -6.8207
29 1 1.6625 -0.3571 -7.4017
30 1 -0.3633 0.5137 0.8901
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3633 -1.0276 -0.0005
33 1 2.2491 -1.6319 1.1523
34 1 1.9778 -1.5512 3.8323
35 1 3.6493 -1.1206 3.3977
36 1 3.3730 1.0765 4.5140
37 1 1.7015 0.6455 4.9483
38 1 2.5385 -1.2897 6.2526
39 1 4.2103 -0.8592 5.8187
40 1 4.0026 -2.0198 7.5535
41 1 4.7984 -2.8926 9.7123
42 1 4.9241 -1.4087 11.6716
43 1 3.4735 1.8389 9.3122
44 1 3.9332 -1.2347 -2.1396
45 1 3.9329 0.3071 -1.2499
46 1 3.9337 -1.2343 -0.3598
47 1 1.3209 0.9108 -2.4018
48 1 0.3362 1.6792 -5.4948
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001329195950.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:44:16
Heat of formation + Delta-G solvation = -119.031563 kcal
Electronic energy + Delta-G solvation = -27655.603215 eV
Core-core repulsion = 23431.330534 eV
Total energy + Delta-G solvation = -4224.272681 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-49.97941 -41.17439 -40.83847 -38.47897 -38.18099 -35.57996 -34.81490 -33.49401
-31.89088 -31.16194 -30.66239 -30.12698 -28.11466 -25.90906 -24.72468 -23.99148
-23.49279 -22.31467 -21.50959 -21.12569 -19.59327 -19.32325 -18.17776 -17.51075
-17.44589 -17.15408 -17.06239 -16.82122 -16.67122 -16.51261 -16.15905 -15.58240
-15.30162 -15.19443 -14.91206 -14.70993 -14.60059 -14.38847 -14.06621 -13.72821
-13.48372 -13.32515 -13.15018 -12.99956 -12.96458 -12.92947 -12.73771 -12.56763
-12.46487 -12.25801 -12.19326 -12.08531 -11.85792 -11.72221 -11.54100 -11.43746
-10.99167 -10.83026 -10.03173 -9.91753 -9.31211 -9.00286 -7.91612 -5.20472
0.10862 0.28674 1.49648 1.49825 1.59676 1.74764 1.90350 2.35368
2.59124 2.61508 3.34894 3.43089 3.67680 3.77808 3.85402 3.96719
3.99634 4.00974 4.05548 4.14649 4.19556 4.23637 4.37302 4.41161
4.44199 4.51055 4.51816 4.61281 4.71895 4.83126 4.90615 4.99158
5.00637 5.07655 5.09579 5.09792 5.20874 5.22773 5.28614 5.32930
5.34764 5.53275 5.54437 5.64783 5.73385 6.29520 6.37218 6.68514
7.35622 7.39124 8.10007 8.32454 9.32229
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.042387 B = 0.001410 C = 0.001387
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 660.427880 B =19854.031923 C =20175.883549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.150 3.850
3 H 0.053 0.947
4 N -0.705 5.705
5 C 0.505 3.495
6 O -0.593 6.593
7 C -0.123 4.123
8 C -0.103 4.103
9 C 0.059 3.941
10 O -0.334 6.334
11 C 0.148 3.852
12 C -0.216 4.216
13 C -0.045 4.045
14 C -0.196 4.196
15 C 0.118 3.882
16 F -0.146 7.146
17 C -0.215 4.215
18 C 0.167 3.833
19 H 0.064 0.936
20 C -0.154 4.154
21 N -0.732 5.732
22 C -0.231 4.231
23 H 0.082 0.918
24 C -0.078 4.078
25 N -0.972 5.972
26 Si 0.970 3.030
27 H -0.262 1.262
28 H -0.297 1.297
29 H -0.298 1.298
30 H 0.046 0.954
31 H 0.047 0.953
32 H 0.066 0.934
33 H 0.417 0.583
34 H 0.132 0.868
35 H 0.131 0.869
36 H 0.058 0.942
37 H 0.059 0.941
38 H 0.091 0.909
39 H 0.090 0.910
40 H 0.163 0.837
41 H 0.171 0.829
42 H 0.154 0.846
43 H 0.134 0.866
44 H 0.042 0.958
45 H 0.029 0.971
46 H 0.078 0.922
47 H 0.370 0.630
48 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.106 -13.048 31.135 34.965
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.043 3.957
3 H 0.072 0.928
4 N -0.357 5.357
5 C 0.294 3.706
6 O -0.474 6.474
7 C -0.162 4.162
8 C -0.141 4.141
9 C -0.015 4.015
10 O -0.248 6.248
11 C 0.102 3.898
12 C -0.235 4.235
13 C -0.062 4.062
14 C -0.214 4.214
15 C 0.099 3.901
16 F -0.124 7.124
17 C -0.234 4.234
18 C 0.058 3.942
19 H 0.082 0.918
20 C -0.214 4.214
21 N -0.372 5.372
22 C -0.363 4.363
23 H 0.100 0.900
24 C -0.270 4.270
25 N -0.623 5.623
26 Si 0.800 3.200
27 H -0.186 1.186
28 H -0.225 1.225
29 H -0.226 1.226
30 H 0.065 0.935
31 H 0.066 0.934
32 H 0.085 0.915
33 H 0.255 0.745
34 H 0.150 0.850
35 H 0.149 0.851
36 H 0.077 0.923
37 H 0.078 0.922
38 H 0.109 0.891
39 H 0.108 0.892
40 H 0.181 0.819
41 H 0.188 0.812
42 H 0.172 0.828
43 H 0.152 0.848
44 H 0.061 0.939
45 H 0.048 0.952
46 H 0.097 0.903
47 H 0.202 0.798
48 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges 8.841 -12.170 31.024 34.479
hybrid contribution -0.341 0.609 -1.181 1.372
sum 8.500 -11.561 29.844 33.114
Atomic orbital electron populations
1.21922 0.95425 1.02124 1.00674 1.20834 0.93896 0.96230 0.84702
0.92845 1.45856 1.66613 1.14691 1.08572 1.21399 0.76699 0.86941
0.85595 1.90724 1.52176 1.18718 1.85769 1.21531 1.05978 0.99160
0.89536 1.21158 1.02305 0.98492 0.92152 1.23050 1.03187 0.91770
0.83475 1.86059 1.80617 1.40925 1.17200 1.18788 0.93351 0.92628
0.85062 1.21714 1.06365 0.94058 1.01340 1.21237 0.93726 1.01030
0.90234 1.21381 1.06202 0.91488 1.02372 1.17552 1.00624 0.89264
0.82691 1.91491 1.94107 1.73090 1.53760 1.20391 1.09905 1.01872
0.91256 1.20596 0.92996 0.95655 0.84953 0.91841 1.22300 0.97443
1.00404 1.01261 1.42514 1.78471 1.10282 1.05968 1.19657 1.34564
0.94315 0.87754 0.89972 1.25535 1.03204 0.96778 1.01440 1.69842
1.52943 1.10320 1.29178 0.85108 0.76520 0.78382 0.79959 1.18576
1.22490 1.22611 0.93537 0.93407 0.91517 0.74517 0.85045 0.85116
0.92284 0.92204 0.89126 0.89176 0.81932 0.81164 0.82796 0.84844
0.93932 0.95224 0.90297 0.79810 0.94261
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.83 9.33 71.98 0.67 -4.16 16
2 C 0.15 4.83 2.21 44.99 0.10 4.93 16
3 H 0.05 2.09 7.58 -2.39 -0.02 2.07 16
4 N -0.70 -15.55 4.38 -442.53 -1.94 -17.49 16
5 C 0.51 11.72 7.79 87.66 0.68 12.41 16
6 O -0.59 -20.56 15.65 -3.04 -0.05 -20.61 16
7 C -0.12 -1.35 5.70 29.85 0.17 -1.18 16
8 C -0.10 -1.59 4.87 30.60 0.15 -1.44 16
9 C 0.06 0.61 4.74 71.98 0.34 0.95 16
10 O -0.33 -5.91 10.14 -92.39 -0.94 -6.85 16
11 C 0.15 2.34 6.68 22.50 0.15 2.49 16
12 C -0.22 -2.08 9.04 22.37 0.20 -1.88 16
13 C -0.04 -0.34 10.04 22.25 0.22 -0.11 16
14 C -0.20 -2.16 10.02 22.33 0.22 -1.94 16
15 C 0.12 1.94 7.30 22.36 0.16 2.10 16
16 F -0.15 -2.73 17.27 44.97 0.78 -1.95 16
17 C -0.21 -3.85 9.97 22.41 0.22 -3.62 16
18 C 0.17 5.93 2.52 44.99 0.11 6.04 16
19 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16
20 C -0.15 -4.92 9.33 71.98 0.67 -4.25 16
21 N -0.73 -35.20 4.43 -322.94 -1.43 -36.63 16
22 C -0.23 -12.22 9.93 84.03 0.83 -11.39 16
23 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16
24 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16
25 N -0.97 -59.25 13.06 21.65 0.28 -58.97 16
26 Si 0.97 45.21 29.55 68.60 2.03 47.23 16
27 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16
28 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16
29 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16
30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
31 H 0.05 1.92 7.44 -2.39 -0.02 1.90 16
32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16
33 H 0.42 5.94 8.39 -92.71 -0.78 5.16 16
34 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16
35 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16
36 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16
37 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16
38 H 0.09 0.50 7.65 -2.39 -0.02 0.48 16
39 H 0.09 0.51 7.67 -2.39 -0.02 0.49 16
40 H 0.16 0.60 6.30 -2.91 -0.02 0.59 16
41 H 0.17 0.11 8.06 -2.91 -0.02 0.09 16
42 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16
43 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16
44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
45 H 0.03 1.03 8.14 -2.39 -0.02 1.02 16
46 H 0.08 1.82 7.45 -2.39 -0.02 1.80 16
47 H 0.37 19.89 7.58 -92.71 -0.70 19.19 16
48 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16
Total: -1.00 -76.06 404.26 3.61 -72.45
By element:
Atomic # 1 Polarization: 28.28 SS G_CDS: -0.51 Total: 27.77 kcal
Atomic # 6 Polarization: -10.33 SS G_CDS: 5.39 Total: -4.95 kcal
Atomic # 7 Polarization: -110.01 SS G_CDS: -3.09 Total: -113.09 kcal
Atomic # 8 Polarization: -26.48 SS G_CDS: -0.98 Total: -27.46 kcal
Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.95 kcal
Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal
Total: -76.06 3.61 -72.45 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001329195950.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.581 kcal
(2) G-P(sol) polarization free energy of solvation -76.062 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.644 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.450 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds