Wall clock time and date at job start Tue Mar 31 2020 20:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47216 * 2 1 4 4 N 1.46508 * 109.46774 * 240.00560 * 2 1 3 5 5 C 1.36933 * 119.99850 * 85.00123 * 4 2 1 6 6 H 1.08001 * 120.00346 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99665 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00251 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99921 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47363 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47223 * 120.00259 * 9 7 5 12 12 H 1.48506 * 109.47139 * 240.00302 * 9 7 5 13 13 C 1.52991 * 109.47449 * 120.00554 * 2 1 3 14 14 H 1.08998 * 109.47894 * 184.99865 * 13 2 1 15 15 C 1.53004 * 109.47329 * 64.99450 * 13 2 1 16 16 N 1.46505 * 109.47005 * 304.99947 * 13 2 1 17 17 C 1.34777 * 120.00115 * 204.99860 * 16 13 2 18 18 O 1.21288 * 119.99593 * 359.97438 * 17 16 13 19 19 C 1.50697 * 120.00369 * 179.97438 * 17 16 13 20 20 C 1.53001 * 109.47291 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.46886 * 179.97438 * 20 19 17 22 22 O 1.42903 * 109.46726 * 180.02562 * 21 20 19 23 23 C 1.35904 * 116.99628 * 180.02562 * 22 21 20 24 24 C 1.38771 * 120.04254 * 359.72712 * 23 22 21 25 25 C 1.38137 * 119.99170 * 179.74512 * 24 23 22 26 26 C 1.38249 * 120.07851 * 0.52965 * 25 24 23 27 27 C 1.38476 * 120.08973 * 359.74253 * 26 25 24 28 28 F 1.35096 * 120.00395 * 179.97438 * 27 26 25 29 29 C 1.38388 * 119.99948 * 359.97438 * 27 26 25 30 30 H 1.08998 * 109.47155 * 59.99364 * 1 2 3 31 31 H 1.08996 * 109.47216 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46737 * 299.99463 * 1 2 3 33 33 H 0.96993 * 119.99827 * 264.99585 * 4 2 1 34 34 H 0.97003 * 120.00581 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47523 * 180.02562 * 15 13 2 36 36 H 1.08998 * 109.46972 * 300.00979 * 15 13 2 37 37 H 1.09004 * 109.46822 * 60.00227 * 15 13 2 38 38 H 0.97003 * 120.00244 * 24.99830 * 16 13 2 39 39 H 1.09001 * 109.46613 * 59.99889 * 19 17 16 40 40 H 1.09002 * 109.47120 * 300.00240 * 19 17 16 41 41 H 1.09001 * 109.46652 * 60.00253 * 20 19 17 42 42 H 1.08992 * 109.47514 * 300.00342 * 20 19 17 43 43 H 1.09002 * 109.47398 * 300.00496 * 21 20 19 44 44 H 1.09001 * 109.47194 * 60.00677 * 21 20 19 45 45 H 1.07997 * 120.00380 * 359.97438 * 24 23 22 46 46 H 1.07994 * 119.95751 * 180.27410 * 25 24 23 47 47 H 1.07999 * 119.95718 * 179.76792 * 26 25 24 48 48 H 1.08004 * 120.03532 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8919 1.0405 -2.4243 7 6 2.6122 -0.6615 -3.5091 8 7 2.9251 -1.9385 -3.4502 9 14 2.7899 0.2704 -5.1183 10 1 2.3739 1.6822 -4.9214 11 1 4.2068 0.2284 -5.5608 12 1 1.9295 -0.3589 -6.1524 13 6 2.0401 -0.7213 1.2491 14 1 3.1264 -0.6445 1.2951 15 6 1.6353 -2.1956 1.1878 16 7 1.4560 -0.1038 2.4423 17 6 2.0914 -0.1940 3.6275 18 8 3.1466 -0.7869 3.7062 19 6 1.4909 0.4416 4.8548 20 6 2.4045 0.1934 6.0567 21 6 1.7951 0.8394 7.3025 22 8 2.6488 0.6080 8.4250 23 6 2.2497 1.1192 9.6193 24 6 1.0635 1.8339 9.7076 25 6 0.6562 2.3485 10.9231 26 6 1.4346 2.1619 12.0503 27 6 2.6217 1.4541 11.9649 28 9 3.3813 1.2733 13.0674 29 6 3.0301 0.9320 10.7501 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.2490 -1.6316 -1.1528 34 1 3.2492 -2.3956 -4.2420 35 1 1.9982 -2.7094 2.0779 36 1 0.5490 -2.2724 1.1418 37 1 2.0699 -2.6550 0.3000 38 1 0.6119 0.3700 2.3794 39 1 0.5109 0.0050 5.0474 40 1 1.3853 1.5145 4.6936 41 1 3.3847 0.6297 5.8641 42 1 2.5097 -0.8794 6.2177 43 1 1.6902 1.9123 7.1412 44 1 0.8148 0.4034 7.4953 45 1 0.4569 1.9845 8.8268 46 1 -0.2693 2.9008 10.9921 47 1 1.1162 2.5684 12.9989 48 1 3.9557 0.3795 10.6829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329195952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:21 Heat of formation + Delta-G solvation = -94.002886 kcal Electronic energy + Delta-G solvation = -27660.041882 eV Core-core repulsion = 23436.854526 eV Total energy + Delta-G solvation = -4223.187356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.35356 -40.59131 -39.81417 -37.84855 -37.01946 -34.12816 -33.92409 -31.85789 -31.32067 -30.27441 -29.50502 -28.24328 -27.44815 -24.48333 -23.85815 -23.35985 -22.76935 -21.69376 -20.29131 -19.25846 -18.96223 -17.60256 -17.25961 -16.86825 -16.85217 -16.55460 -16.39674 -16.03318 -15.55970 -15.31147 -14.85216 -14.69515 -14.30232 -14.23497 -13.98032 -13.66020 -13.46054 -13.15887 -12.94861 -12.68582 -12.52042 -12.45608 -12.37522 -11.99397 -11.90371 -11.67893 -11.63492 -11.35370 -11.30371 -10.99337 -10.97353 -10.86535 -10.50412 -10.27042 -9.99422 -9.83531 -9.62607 -9.38280 -8.97948 -8.83083 -8.78949 -7.03647 -5.81535 -3.11198 0.62945 0.79773 2.50132 2.72191 3.09399 3.32968 3.40724 3.46482 3.48427 3.88002 4.20722 4.44823 4.47441 4.49047 4.52208 4.56271 4.64165 4.74577 4.88232 4.96021 4.97602 5.06565 5.24637 5.36448 5.44644 5.45011 5.58732 5.59607 5.61954 5.70960 5.72282 5.79877 5.81479 5.93239 6.03669 6.12198 6.22902 6.26018 6.36397 6.44368 6.59900 6.68155 6.88054 6.89111 7.03682 7.65085 7.66097 8.34200 8.37566 9.48317 10.03636 10.38312 11.41088 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034861 B = 0.001417 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.005902 B =19754.360705 C =19947.880595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.051 0.949 4 N -0.720 5.720 5 C -0.242 4.242 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.292 1.292 13 C 0.135 3.865 14 H 0.087 0.913 15 C -0.159 4.159 16 N -0.720 5.720 17 C 0.509 3.491 18 O -0.540 6.540 19 C -0.138 4.138 20 C -0.105 4.105 21 C 0.059 3.941 22 O -0.307 6.307 23 C 0.164 3.836 24 C -0.221 4.221 25 C -0.050 4.050 26 C -0.196 4.196 27 C 0.139 3.861 28 F -0.134 7.134 29 C -0.193 4.193 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.397 0.603 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.164 8.397 29.738 31.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.373 4.373 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.219 1.219 13 C 0.031 3.969 14 H 0.106 0.894 15 C -0.217 4.217 16 N -0.372 5.372 17 C 0.295 3.705 18 O -0.417 6.417 19 C -0.178 4.178 20 C -0.142 4.142 21 C -0.016 4.016 22 O -0.220 6.220 23 C 0.118 3.882 24 C -0.240 4.240 25 C -0.068 4.068 26 C -0.215 4.215 27 C 0.119 3.881 28 F -0.113 7.113 29 C -0.212 4.212 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.222 0.778 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.233 0.767 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.154 0.846 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.171 7.961 29.600 31.480 hybrid contribution -0.395 0.454 -0.869 1.057 sum -7.566 8.415 28.731 30.880 Atomic orbital electron populations 1.22535 0.99350 1.01246 0.99695 1.20363 0.92156 0.95578 0.86218 0.93102 1.42460 1.78213 1.10800 1.04839 1.19269 1.36865 0.93982 0.87151 0.91066 1.24744 1.01918 0.95986 0.98118 1.69663 1.50645 1.08678 1.28918 0.86118 0.77357 0.78758 0.83924 1.20565 1.21825 1.21864 1.21331 0.99033 0.92861 0.83720 0.89449 1.22136 1.01436 0.95865 1.02275 1.46271 1.25783 1.56701 1.08491 1.20445 0.85066 0.80373 0.84615 1.90731 1.22568 1.42840 1.85580 1.21525 1.00509 1.02699 0.93079 1.21235 0.99902 1.03045 0.90065 1.22951 0.93444 1.00784 0.84425 1.86104 1.48682 1.72317 1.14904 1.18632 0.92185 0.91858 0.85528 1.21377 0.98078 1.04636 0.99897 1.20804 0.98664 0.96289 0.91042 1.21063 0.95299 1.04367 1.00748 1.17299 0.90256 0.98117 0.82395 1.91524 1.75007 1.93484 1.51281 1.20301 1.03355 1.07632 0.89913 0.92411 0.92816 0.94894 0.77775 0.93458 0.93139 0.92582 0.90530 0.76682 0.88674 0.88611 0.89737 0.89778 0.91518 0.91542 0.84611 0.84603 0.84598 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 9.01 37.16 0.33 -2.34 16 2 C 0.17 3.12 2.93 -67.93 -0.20 2.92 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 N -0.72 -17.31 5.03 -53.43 -0.27 -17.58 16 5 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 9 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 C 0.14 2.24 2.62 -67.93 -0.18 2.06 16 14 H 0.09 1.70 7.58 -51.93 -0.39 1.30 16 15 C -0.16 -2.62 9.00 37.16 0.33 -2.28 16 16 N -0.72 -9.05 4.99 -53.81 -0.27 -9.32 16 17 C 0.51 6.48 7.79 -10.99 -0.09 6.40 16 18 O -0.54 -9.32 15.65 5.55 0.09 -9.24 16 19 C -0.14 -1.04 5.70 -27.88 -0.16 -1.20 16 20 C -0.10 -0.89 4.87 -26.73 -0.13 -1.02 16 21 C 0.06 0.39 4.74 37.16 0.18 0.57 16 22 O -0.31 -2.84 10.14 -19.44 -0.20 -3.04 16 23 C 0.16 1.39 6.68 -39.23 -0.26 1.13 16 24 C -0.22 -1.43 9.04 -39.42 -0.36 -1.78 16 25 C -0.05 -0.28 10.04 -39.61 -0.40 -0.68 16 26 C -0.20 -1.28 10.02 -39.49 -0.40 -1.67 16 27 C 0.14 1.15 7.30 -39.44 -0.29 0.86 16 28 F -0.13 -1.21 17.27 2.25 0.04 -1.17 16 29 C -0.19 -1.67 9.97 -39.37 -0.39 -2.06 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.87 6.57 -51.93 -0.34 0.53 16 32 H 0.03 0.39 6.29 -51.93 -0.33 0.06 16 33 H 0.39 9.87 5.77 -40.82 -0.24 9.63 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.85 6.56 -51.93 -0.34 0.51 16 37 H 0.08 1.43 6.29 -51.93 -0.33 1.10 16 38 H 0.40 3.89 6.58 -40.82 -0.27 3.62 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 42 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 43 H 0.07 0.34 7.65 -51.93 -0.40 -0.06 16 44 H 0.07 0.33 7.67 -51.93 -0.40 -0.07 16 45 H 0.14 0.60 6.30 -52.49 -0.33 0.27 16 46 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 47 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 48 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 396.56 15.07 5.98 5.98 Total: -1.00 -32.95 396.56 -8.30 -41.25 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.13 Total: 9.24 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.24 Total: -6.19 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.19 Total: -53.82 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.11 Total: -12.28 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.95 -8.30 -41.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329195952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.754 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds