Wall clock time and date at job start Tue Mar 31 2020 20:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47216 * 2 1 4 4 N 1.46508 * 109.46774 * 240.00560 * 2 1 3 5 5 C 1.36933 * 119.99850 * 85.00123 * 4 2 1 6 6 H 1.08001 * 120.00346 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99665 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00251 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99921 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47363 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47223 * 120.00259 * 9 7 5 12 12 H 1.48506 * 109.47139 * 240.00302 * 9 7 5 13 13 C 1.52991 * 109.47449 * 120.00554 * 2 1 3 14 14 H 1.08998 * 109.47894 * 184.99865 * 13 2 1 15 15 C 1.53004 * 109.47329 * 64.99450 * 13 2 1 16 16 N 1.46505 * 109.47005 * 304.99947 * 13 2 1 17 17 C 1.34777 * 120.00115 * 204.99860 * 16 13 2 18 18 O 1.21288 * 119.99593 * 359.97438 * 17 16 13 19 19 C 1.50697 * 120.00369 * 179.97438 * 17 16 13 20 20 C 1.53001 * 109.47291 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.46886 * 179.97438 * 20 19 17 22 22 O 1.42903 * 109.46726 * 180.02562 * 21 20 19 23 23 C 1.35904 * 116.99628 * 180.02562 * 22 21 20 24 24 C 1.38771 * 120.04254 * 359.72712 * 23 22 21 25 25 C 1.38137 * 119.99170 * 179.74512 * 24 23 22 26 26 C 1.38249 * 120.07851 * 0.52965 * 25 24 23 27 27 C 1.38476 * 120.08973 * 359.74253 * 26 25 24 28 28 F 1.35096 * 120.00395 * 179.97438 * 27 26 25 29 29 C 1.38388 * 119.99948 * 359.97438 * 27 26 25 30 30 H 1.08998 * 109.47155 * 59.99364 * 1 2 3 31 31 H 1.08996 * 109.47216 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46737 * 299.99463 * 1 2 3 33 33 H 0.96993 * 119.99827 * 264.99585 * 4 2 1 34 34 H 0.97003 * 120.00581 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47523 * 180.02562 * 15 13 2 36 36 H 1.08998 * 109.46972 * 300.00979 * 15 13 2 37 37 H 1.09004 * 109.46822 * 60.00227 * 15 13 2 38 38 H 0.97003 * 120.00244 * 24.99830 * 16 13 2 39 39 H 1.09001 * 109.46613 * 59.99889 * 19 17 16 40 40 H 1.09002 * 109.47120 * 300.00240 * 19 17 16 41 41 H 1.09001 * 109.46652 * 60.00253 * 20 19 17 42 42 H 1.08992 * 109.47514 * 300.00342 * 20 19 17 43 43 H 1.09002 * 109.47398 * 300.00496 * 21 20 19 44 44 H 1.09001 * 109.47194 * 60.00677 * 21 20 19 45 45 H 1.07997 * 120.00380 * 359.97438 * 24 23 22 46 46 H 1.07994 * 119.95751 * 180.27410 * 25 24 23 47 47 H 1.07999 * 119.95718 * 179.76792 * 26 25 24 48 48 H 1.08004 * 120.03532 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8919 1.0405 -2.4243 7 6 2.6122 -0.6615 -3.5091 8 7 2.9251 -1.9385 -3.4502 9 14 2.7899 0.2704 -5.1183 10 1 2.3739 1.6822 -4.9214 11 1 4.2068 0.2284 -5.5608 12 1 1.9295 -0.3589 -6.1524 13 6 2.0401 -0.7213 1.2491 14 1 3.1264 -0.6445 1.2951 15 6 1.6353 -2.1956 1.1878 16 7 1.4560 -0.1038 2.4423 17 6 2.0914 -0.1940 3.6275 18 8 3.1466 -0.7869 3.7062 19 6 1.4909 0.4416 4.8548 20 6 2.4045 0.1934 6.0567 21 6 1.7951 0.8394 7.3025 22 8 2.6488 0.6080 8.4250 23 6 2.2497 1.1192 9.6193 24 6 1.0635 1.8339 9.7076 25 6 0.6562 2.3485 10.9231 26 6 1.4346 2.1619 12.0503 27 6 2.6217 1.4541 11.9649 28 9 3.3813 1.2733 13.0674 29 6 3.0301 0.9320 10.7501 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.2490 -1.6316 -1.1528 34 1 3.2492 -2.3956 -4.2420 35 1 1.9982 -2.7094 2.0779 36 1 0.5490 -2.2724 1.1418 37 1 2.0699 -2.6550 0.3000 38 1 0.6119 0.3700 2.3794 39 1 0.5109 0.0050 5.0474 40 1 1.3853 1.5145 4.6936 41 1 3.3847 0.6297 5.8641 42 1 2.5097 -0.8794 6.2177 43 1 1.6902 1.9123 7.1412 44 1 0.8148 0.4034 7.4953 45 1 0.4569 1.9845 8.8268 46 1 -0.2693 2.9008 10.9921 47 1 1.1162 2.5684 12.9989 48 1 3.9557 0.3795 10.6829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329195952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:20 Heat of formation + Delta-G solvation = -115.275119 kcal Electronic energy + Delta-G solvation = -27660.964316 eV Core-core repulsion = 23436.854526 eV Total energy + Delta-G solvation = -4224.109789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.98211 -41.18487 -40.87762 -38.57940 -38.24937 -35.58812 -34.82331 -33.51433 -31.88455 -31.12764 -30.66585 -29.79347 -28.16229 -26.15540 -25.08208 -24.09512 -23.60566 -22.36682 -21.29042 -20.62635 -19.61872 -19.41184 -18.22766 -17.51903 -17.44882 -17.12290 -17.03451 -16.75589 -16.65756 -16.59409 -16.18492 -15.85167 -15.54320 -15.26769 -14.92711 -14.71019 -14.55576 -14.47837 -13.89400 -13.72127 -13.54648 -13.17141 -13.10137 -13.06939 -12.98761 -12.96021 -12.81838 -12.62660 -12.46604 -12.22456 -12.07354 -11.99413 -11.85998 -11.65867 -11.57571 -11.53650 -10.96110 -10.84615 -10.04053 -9.91755 -9.31279 -9.02601 -7.93814 -5.22449 0.10810 0.28655 1.48135 1.48964 1.58556 1.72860 1.90070 2.35379 2.59089 2.59578 3.34828 3.40619 3.67552 3.78703 3.91994 3.96136 3.99345 4.00108 4.02041 4.10280 4.14438 4.19399 4.34691 4.40830 4.43758 4.50078 4.51280 4.62691 4.69600 4.74941 4.90085 4.99190 5.00630 5.07440 5.09298 5.09587 5.21018 5.21944 5.27590 5.29422 5.34712 5.51653 5.61365 5.66566 5.73345 6.28622 6.37091 6.66247 7.35006 7.37137 8.10399 8.32491 9.30058 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034861 B = 0.001417 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.005902 B =19754.360705 C =19947.880595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.047 0.953 4 N -0.736 5.736 5 C -0.237 4.237 6 H 0.079 0.921 7 C -0.076 4.076 8 N -0.971 5.971 9 Si 0.971 3.029 10 H -0.264 1.264 11 H -0.298 1.298 12 H -0.294 1.294 13 C 0.149 3.851 14 H 0.051 0.949 15 C -0.149 4.149 16 N -0.707 5.707 17 C 0.504 3.496 18 O -0.593 6.593 19 C -0.123 4.123 20 C -0.103 4.103 21 C 0.059 3.941 22 O -0.334 6.334 23 C 0.148 3.852 24 C -0.216 4.216 25 C -0.044 4.044 26 C -0.196 4.196 27 C 0.118 3.882 28 F -0.146 7.146 29 C -0.215 4.215 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.416 0.584 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.163 0.837 46 H 0.171 0.829 47 H 0.154 0.846 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 11.019 31.037 34.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.065 0.935 4 N -0.378 5.378 5 C -0.369 4.369 6 H 0.097 0.903 7 C -0.269 4.269 8 N -0.622 5.622 9 Si 0.801 3.199 10 H -0.188 1.188 11 H -0.225 1.225 12 H -0.222 1.222 13 C 0.043 3.957 14 H 0.069 0.931 15 C -0.208 4.208 16 N -0.361 5.361 17 C 0.292 3.708 18 O -0.474 6.474 19 C -0.162 4.162 20 C -0.141 4.141 21 C -0.015 4.015 22 O -0.248 6.248 23 C 0.102 3.898 24 C -0.235 4.235 25 C -0.062 4.062 26 C -0.214 4.214 27 C 0.099 3.901 28 F -0.124 7.124 29 C -0.234 4.234 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.209 0.791 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.255 0.745 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.181 0.819 46 H 0.188 0.812 47 H 0.172 0.828 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.680 10.647 30.945 34.424 hybrid contribution 0.681 -0.329 -1.163 1.388 sum -9.999 10.318 29.782 33.067 Atomic orbital electron populations 1.22351 0.96338 1.01609 1.01369 1.20564 0.94058 0.94837 0.85018 0.93476 1.42687 1.78660 1.10532 1.05927 1.19672 1.34759 0.94331 0.88096 0.90303 1.25534 1.02987 0.96861 1.01475 1.69822 1.52689 1.10294 1.29352 0.85101 0.76579 0.78323 0.79924 1.18793 1.22541 1.22157 1.20824 0.97139 0.93032 0.84750 0.93078 1.22022 1.02340 0.95589 1.00811 1.46029 1.26337 1.56485 1.07224 1.21453 0.84257 0.79380 0.85718 1.90724 1.25121 1.45185 1.86353 1.21536 1.01049 1.04409 0.89236 1.21155 0.99404 1.01621 0.91929 1.23047 0.93648 1.02117 0.82663 1.86061 1.50031 1.72952 1.15760 1.18788 0.93191 0.92840 0.85016 1.21716 0.97153 1.03297 1.01307 1.21236 0.99392 0.95488 0.90105 1.21381 0.94426 1.03444 1.02190 1.17549 0.91225 0.99362 0.81993 1.91488 1.75495 1.93733 1.51727 1.20392 1.03656 1.08549 0.90827 0.93978 0.93103 0.89970 0.79078 0.94139 0.93218 0.90666 0.93368 0.74475 0.84938 0.85160 0.92328 0.92134 0.89194 0.89065 0.81927 0.81160 0.82795 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 9.01 71.98 0.65 -3.92 16 2 C 0.16 5.95 2.93 44.99 0.13 6.08 16 3 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 4 N -0.74 -35.82 5.03 -322.94 -1.63 -37.45 16 5 C -0.24 -12.79 9.93 84.03 0.83 -11.96 16 6 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 8 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 9 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 C 0.15 4.89 2.62 44.99 0.12 5.00 16 14 H 0.05 2.06 7.58 -2.39 -0.02 2.05 16 15 C -0.15 -4.93 9.00 71.98 0.65 -4.28 16 16 N -0.71 -16.04 4.99 -442.53 -2.21 -18.25 16 17 C 0.50 11.95 7.79 87.66 0.68 12.63 16 18 O -0.59 -20.85 15.65 -3.05 -0.05 -20.90 16 19 C -0.12 -1.39 5.70 29.85 0.17 -1.22 16 20 C -0.10 -1.61 4.87 30.59 0.15 -1.46 16 21 C 0.06 0.61 4.74 71.98 0.34 0.96 16 22 O -0.33 -5.94 10.14 -92.47 -0.94 -6.87 16 23 C 0.15 2.35 6.68 22.50 0.15 2.50 16 24 C -0.22 -2.08 9.04 22.37 0.20 -1.88 16 25 C -0.04 -0.34 10.04 22.25 0.22 -0.11 16 26 C -0.20 -2.17 10.02 22.33 0.22 -1.94 16 27 C 0.12 1.94 7.30 22.36 0.16 2.11 16 28 F -0.15 -2.73 17.27 44.97 0.78 -1.95 16 29 C -0.21 -3.85 9.97 22.41 0.22 -3.63 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.52 6.57 -2.39 -0.02 1.51 16 32 H 0.08 1.56 6.29 -2.38 -0.02 1.55 16 33 H 0.38 19.82 5.77 -92.71 -0.54 19.29 16 34 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 2.16 6.56 -2.39 -0.02 2.15 16 37 H 0.05 1.87 6.29 -2.38 -0.02 1.85 16 38 H 0.42 6.25 6.58 -92.71 -0.61 5.64 16 39 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 42 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 43 H 0.09 0.52 7.65 -2.39 -0.02 0.50 16 44 H 0.09 0.50 7.67 -2.39 -0.02 0.48 16 45 H 0.16 0.61 6.30 -2.91 -0.02 0.59 16 46 H 0.17 0.11 8.06 -2.91 -0.02 0.09 16 47 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 48 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -77.02 396.56 3.49 -73.53 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.16 Total: 28.17 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 5.38 Total: -5.00 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -3.55 Total: -114.67 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.99 Total: -27.78 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.95 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -77.02 3.49 -73.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329195952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.744 kcal (2) G-P(sol) polarization free energy of solvation -77.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds