Wall clock time and date at job start Tue Mar 31 2020 21:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99813 * 2 1 4 4 C 1.38655 * 120.06410 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.97092 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09453 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.12749 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.98622 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47245 * 264.99721 * 8 7 6 10 10 C 1.50703 * 109.46864 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00343 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99496 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00381 * 359.97438 * 12 10 9 14 14 C 1.46503 * 119.99611 * 180.02562 * 12 10 9 15 15 C 1.53006 * 109.47067 * 90.00004 * 14 12 10 16 16 H 1.08998 * 109.47256 * 294.99546 * 15 14 12 17 17 C 1.53004 * 109.46998 * 174.99721 * 15 14 12 18 18 N 1.46501 * 109.47222 * 54.99945 * 15 14 12 19 19 C 1.36936 * 120.00223 * 204.99688 * 18 15 14 20 20 H 1.08003 * 119.99562 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00045 * 179.97438 * 19 18 15 22 22 N 1.31614 * 119.99817 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99846 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47229 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47060 * 120.00212 * 23 21 19 26 26 H 1.48497 * 109.47113 * 240.00429 * 23 21 19 27 27 C 1.38338 * 120.03013 * 359.97438 * 7 6 5 28 28 F 1.35100 * 120.04992 * 180.28191 * 27 7 6 29 29 H 1.08998 * 109.47460 * 60.00264 * 1 2 3 30 30 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47200 * 300.00040 * 1 2 3 32 32 H 1.08005 * 120.01507 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.95506 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.93539 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47058 * 25.00266 * 8 7 6 36 36 H 1.09007 * 109.46913 * 144.99613 * 8 7 6 37 37 H 1.08999 * 109.47088 * 300.00072 * 9 8 7 38 38 H 1.08994 * 109.47014 * 59.99952 * 9 8 7 39 39 H 1.08996 * 109.47507 * 89.99928 * 13 12 10 40 40 H 1.09003 * 109.47633 * 210.00203 * 13 12 10 41 41 H 1.09003 * 109.46949 * 329.99851 * 13 12 10 42 42 H 1.08999 * 109.47022 * 209.99763 * 14 12 10 43 43 H 1.08994 * 109.47278 * 329.99854 * 14 12 10 44 44 H 1.09000 * 109.47154 * 60.00330 * 17 15 14 45 45 H 1.09001 * 109.47085 * 179.97438 * 17 15 14 46 46 H 1.08998 * 109.46974 * 299.99998 * 17 15 14 47 47 H 0.97004 * 119.99998 * 24.99582 * 18 15 14 48 48 H 0.97007 * 119.99675 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0005 7 6 4.0579 2.5199 0.0000 8 6 5.5625 2.6026 0.0000 9 6 6.0787 2.5043 -1.4369 10 6 7.5835 2.5864 -1.4368 11 8 8.1840 2.7107 -0.3904 12 7 8.2620 2.5216 -2.5996 13 6 7.5368 2.3709 -3.8634 14 6 9.7249 2.6008 -2.5994 15 6 10.3118 1.1933 -2.4741 16 1 10.0457 0.7738 -1.5039 17 6 11.8351 1.2631 -2.5990 18 7 9.7729 0.3430 -3.5384 19 6 9.7177 -1.0147 -3.3682 20 1 10.0710 -1.4584 -2.4491 21 6 9.2066 -1.8203 -4.3764 22 7 8.7756 -1.2794 -5.4962 23 14 9.1307 -3.6722 -4.1439 24 1 9.6723 -4.0260 -2.8072 25 1 7.7201 -4.1259 -4.2418 26 1 9.9387 -4.3370 -5.1976 27 6 3.4333 1.2856 0.0005 28 9 4.1713 0.1540 0.0068 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2136 2.3200 -0.0005 33 1 1.3340 4.5115 -0.0011 34 1 3.7914 4.6406 -0.0014 35 1 5.8742 3.5527 0.4339 36 1 5.9715 1.7822 0.5899 37 1 5.7671 1.5542 -1.8708 38 1 5.6698 3.3246 -2.0267 39 1 7.3007 3.3556 -4.2666 40 1 8.1566 1.8258 -4.5753 41 1 6.6132 1.8189 -3.6887 42 1 10.0643 3.0544 -3.5306 43 1 10.0557 3.2087 -1.7574 44 1 12.2361 1.8957 -1.8072 45 1 12.2533 0.2605 -2.5093 46 1 12.1012 1.6827 -3.5692 47 1 9.4552 0.7416 -4.3637 48 1 8.4188 -1.8425 -6.2009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331469953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:05 Heat of formation + Delta-G solvation = -81.757895 kcal Electronic energy + Delta-G solvation = -29734.717130 eV Core-core repulsion = 25512.060757 eV Total energy + Delta-G solvation = -4222.656374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.75830 -40.26282 -39.56890 -37.95030 -36.31736 -34.15404 -33.79584 -32.00606 -30.51057 -29.81192 -28.74672 -27.62444 -26.77957 -25.89448 -24.15893 -23.32749 -22.76331 -21.30172 -20.07641 -18.66766 -18.28152 -17.25665 -17.24328 -17.10756 -16.56176 -16.31754 -15.70895 -15.48225 -15.09944 -14.97095 -14.74141 -14.62123 -14.08549 -13.84873 -13.62804 -13.38610 -13.00173 -12.84979 -12.69885 -12.43680 -12.25164 -12.18931 -12.06794 -12.03680 -11.76478 -11.70568 -11.38769 -11.27167 -11.20752 -11.16593 -10.93634 -10.81950 -10.64653 -10.31856 -9.98818 -9.61705 -9.41088 -8.92304 -8.87205 -8.41479 -8.08750 -6.90698 -5.74719 -3.00919 0.88706 1.03835 2.87372 3.04760 3.29122 3.46201 3.52855 3.53534 3.55022 4.09239 4.41272 4.51932 4.63684 4.74734 4.82084 4.83868 4.97275 4.97604 5.07404 5.16355 5.20072 5.34223 5.53689 5.58304 5.59408 5.64875 5.68877 5.77575 5.82229 5.90653 5.93059 5.94974 6.06568 6.15302 6.18185 6.24920 6.31988 6.37302 6.40883 6.44233 6.74734 6.87053 6.92655 7.04216 7.21348 7.75946 7.85408 8.45445 8.60544 9.56671 10.12619 10.48400 11.48476 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010537 B = 0.003246 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.642809 B = 8624.903660 C =10490.284019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.095 3.905 4 C -0.190 4.190 5 C -0.090 4.090 6 C -0.126 4.126 7 C -0.074 4.074 8 C -0.064 4.064 9 C -0.133 4.133 10 C 0.517 3.483 11 O -0.553 6.553 12 N -0.595 5.595 13 C 0.081 3.919 14 C 0.110 3.890 15 C 0.154 3.846 16 H 0.051 0.949 17 C -0.162 4.162 18 N -0.720 5.720 19 C -0.228 4.228 20 H 0.068 0.932 21 C -0.014 4.014 22 N -0.936 5.936 23 Si 0.902 3.098 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.074 3.926 28 F -0.124 7.124 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.381 0.619 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.564 13.081 8.755 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.049 3.951 4 C -0.208 4.208 5 C -0.108 4.108 6 C -0.144 4.144 7 C -0.075 4.075 8 C -0.102 4.102 9 C -0.173 4.173 10 C 0.305 3.695 11 O -0.432 6.432 12 N -0.326 5.326 13 C -0.063 4.063 14 C -0.013 4.013 15 C 0.043 3.957 16 H 0.069 0.931 17 C -0.223 4.223 18 N -0.363 5.363 19 C -0.360 4.360 20 H 0.086 0.914 21 C -0.209 4.209 22 N -0.586 5.586 23 Si 0.734 3.266 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.054 3.946 28 F -0.103 7.103 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.216 0.784 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.134 12.722 9.347 22.573 hybrid contribution -0.395 -1.220 -0.461 1.363 sum -16.529 11.502 8.886 22.011 Atomic orbital electron populations 1.23106 0.78027 1.04301 1.01340 1.86173 1.21624 1.25791 1.88631 1.19026 0.90800 0.85682 0.99591 1.21101 1.00139 0.91572 1.08019 1.20963 0.94523 0.97101 0.98220 1.20897 0.93438 0.97677 1.02379 1.19891 0.97059 0.90901 0.99687 1.20301 0.88126 1.05023 0.96739 1.21624 0.92966 1.04707 0.97985 1.20420 0.89659 0.76029 0.83395 1.90646 1.70735 1.50729 1.31095 1.47603 1.06978 1.71282 1.06724 1.21892 0.98205 1.00114 0.86068 1.21823 0.79004 0.98513 1.01975 1.20667 0.91441 0.89791 0.93793 0.93054 1.22369 0.98878 1.01199 0.99809 1.42478 1.74368 1.03267 1.16199 1.19286 1.33520 0.83037 1.00142 0.91364 1.24645 1.02051 0.97716 0.96510 1.69635 1.48576 1.33921 1.06434 0.86169 0.77201 0.86044 0.77165 1.20646 1.21950 1.22009 1.16891 0.85857 0.83013 1.08795 1.91548 1.76245 1.48536 1.93957 0.92432 0.87955 0.92548 0.84707 0.85105 0.84735 0.89438 0.89491 0.88459 0.89033 0.93686 0.89044 0.91275 0.91098 0.90231 0.94333 0.92608 0.93511 0.78392 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.77 10.36 -19.61 -0.20 -3.97 16 3 C 0.10 1.16 6.69 -39.18 -0.26 0.89 16 4 C -0.19 -1.71 9.04 -39.45 -0.36 -2.06 16 5 C -0.09 -0.73 10.04 -39.59 -0.40 -1.13 16 6 C -0.13 -1.17 9.68 -39.57 -0.38 -1.56 16 7 C -0.07 -0.90 5.14 -104.58 -0.54 -1.43 16 8 C -0.06 -0.85 4.41 -27.89 -0.12 -0.97 16 9 C -0.13 -1.87 4.23 -27.88 -0.12 -1.98 16 10 C 0.52 9.04 7.67 -10.98 -0.08 8.95 16 11 O -0.55 -11.15 15.56 5.56 0.09 -11.07 16 12 N -0.59 -10.27 2.73 -181.57 -0.50 -10.76 16 13 C 0.08 1.27 9.86 59.84 0.59 1.86 16 14 C 0.11 1.93 5.05 -4.04 -0.02 1.91 16 15 C 0.15 3.20 3.20 -67.92 -0.22 2.98 16 16 H 0.05 1.20 8.08 -51.93 -0.42 0.78 16 17 C -0.16 -3.01 9.49 37.16 0.35 -2.66 16 18 N -0.72 -17.66 4.56 -53.42 -0.24 -17.91 16 19 C -0.23 -6.37 9.93 -15.06 -0.15 -6.52 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.94 -27.45 13.06 55.49 0.72 -26.73 16 23 Si 0.90 22.83 29.55 -169.99 -5.02 17.80 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 C 0.07 1.04 7.25 -39.29 -0.28 0.75 16 28 F -0.12 -2.09 16.41 2.25 0.04 -2.05 16 29 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.14 0.84 6.30 -52.48 -0.33 0.51 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.09 1.06 8.01 -51.93 -0.42 0.64 16 36 H 0.09 1.33 7.74 -51.92 -0.40 0.93 16 37 H 0.10 1.49 7.40 -51.93 -0.38 1.10 16 38 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.69 5.62 -51.93 -0.29 1.40 16 41 H 0.07 1.07 6.44 -51.93 -0.33 0.74 16 42 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 43 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.38 9.52 5.33 -40.82 -0.22 9.31 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 LS Contribution 397.36 15.07 5.99 5.99 Total: -1.00 -33.79 397.36 -7.55 -41.33 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.32 Total: 7.64 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.09 Total: -0.28 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.01 Total: -55.40 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.12 Total: -15.04 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.79 -7.55 -41.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331469953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.423 kcal (2) G-P(sol) polarization free energy of solvation -33.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds