Wall clock time and date at job start Tue Mar 31 2020 21:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99813 * 2 1 4 4 C 1.38655 * 120.06410 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.97092 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09453 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.12749 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.98622 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47245 * 264.99721 * 8 7 6 10 10 C 1.50703 * 109.46864 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00343 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99496 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00381 * 359.97438 * 12 10 9 14 14 C 1.46503 * 119.99611 * 180.02562 * 12 10 9 15 15 C 1.53006 * 109.47067 * 90.00004 * 14 12 10 16 16 H 1.08998 * 109.47256 * 294.99546 * 15 14 12 17 17 C 1.53004 * 109.46998 * 174.99721 * 15 14 12 18 18 N 1.46501 * 109.47222 * 54.99945 * 15 14 12 19 19 C 1.36936 * 120.00223 * 204.99688 * 18 15 14 20 20 H 1.08003 * 119.99562 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00045 * 179.97438 * 19 18 15 22 22 N 1.31614 * 119.99817 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99846 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47229 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47060 * 120.00212 * 23 21 19 26 26 H 1.48497 * 109.47113 * 240.00429 * 23 21 19 27 27 C 1.38338 * 120.03013 * 359.97438 * 7 6 5 28 28 F 1.35100 * 120.04992 * 180.28191 * 27 7 6 29 29 H 1.08998 * 109.47460 * 60.00264 * 1 2 3 30 30 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47200 * 300.00040 * 1 2 3 32 32 H 1.08005 * 120.01507 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.95506 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.93539 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47058 * 25.00266 * 8 7 6 36 36 H 1.09007 * 109.46913 * 144.99613 * 8 7 6 37 37 H 1.08999 * 109.47088 * 300.00072 * 9 8 7 38 38 H 1.08994 * 109.47014 * 59.99952 * 9 8 7 39 39 H 1.08996 * 109.47507 * 89.99928 * 13 12 10 40 40 H 1.09003 * 109.47633 * 210.00203 * 13 12 10 41 41 H 1.09003 * 109.46949 * 329.99851 * 13 12 10 42 42 H 1.08999 * 109.47022 * 209.99763 * 14 12 10 43 43 H 1.08994 * 109.47278 * 329.99854 * 14 12 10 44 44 H 1.09000 * 109.47154 * 60.00330 * 17 15 14 45 45 H 1.09001 * 109.47085 * 179.97438 * 17 15 14 46 46 H 1.08998 * 109.46974 * 299.99998 * 17 15 14 47 47 H 0.97004 * 119.99998 * 24.99582 * 18 15 14 48 48 H 0.97007 * 119.99675 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0005 7 6 4.0579 2.5199 0.0000 8 6 5.5625 2.6026 0.0000 9 6 6.0787 2.5043 -1.4369 10 6 7.5835 2.5864 -1.4368 11 8 8.1840 2.7107 -0.3904 12 7 8.2620 2.5216 -2.5996 13 6 7.5368 2.3709 -3.8634 14 6 9.7249 2.6008 -2.5994 15 6 10.3118 1.1933 -2.4741 16 1 10.0457 0.7738 -1.5039 17 6 11.8351 1.2631 -2.5990 18 7 9.7729 0.3430 -3.5384 19 6 9.7177 -1.0147 -3.3682 20 1 10.0710 -1.4584 -2.4491 21 6 9.2066 -1.8203 -4.3764 22 7 8.7756 -1.2794 -5.4962 23 14 9.1307 -3.6722 -4.1439 24 1 9.6723 -4.0260 -2.8072 25 1 7.7201 -4.1259 -4.2418 26 1 9.9387 -4.3370 -5.1976 27 6 3.4333 1.2856 0.0005 28 9 4.1713 0.1540 0.0068 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2136 2.3200 -0.0005 33 1 1.3340 4.5115 -0.0011 34 1 3.7914 4.6406 -0.0014 35 1 5.8742 3.5527 0.4339 36 1 5.9715 1.7822 0.5899 37 1 5.7671 1.5542 -1.8708 38 1 5.6698 3.3246 -2.0267 39 1 7.3007 3.3556 -4.2666 40 1 8.1566 1.8258 -4.5753 41 1 6.6132 1.8189 -3.6887 42 1 10.0643 3.0544 -3.5306 43 1 10.0557 3.2087 -1.7574 44 1 12.2361 1.8957 -1.8072 45 1 12.2533 0.2605 -2.5093 46 1 12.1012 1.6827 -3.5692 47 1 9.4552 0.7416 -4.3637 48 1 8.4188 -1.8425 -6.2009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331469953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:04 Heat of formation + Delta-G solvation = -102.360629 kcal Electronic energy + Delta-G solvation = -29735.610532 eV Core-core repulsion = 25512.060757 eV Total energy + Delta-G solvation = -4223.549775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.85584 -41.14869 -40.84215 -38.78891 -37.92436 -35.78966 -34.85898 -33.90240 -31.29206 -30.98848 -30.43122 -28.31638 -28.09607 -27.17435 -25.84330 -24.84407 -23.54571 -22.26245 -21.66359 -20.07280 -19.28996 -19.12981 -18.14170 -18.08179 -17.76826 -17.26978 -16.99922 -16.87361 -16.52741 -16.06429 -15.77652 -15.58070 -15.55690 -15.41629 -14.95125 -14.66255 -14.32500 -13.93133 -13.79611 -13.68906 -13.68013 -13.50564 -13.24679 -13.13828 -12.99476 -12.92928 -12.83766 -12.64830 -12.50201 -12.49662 -12.18161 -12.08078 -11.97854 -11.95273 -11.84422 -11.63504 -11.02619 -10.78357 -9.75733 -9.53843 -9.22372 -8.94891 -7.94536 -5.19135 0.08508 0.26178 1.42431 1.44566 1.52609 1.65875 2.13641 2.21734 2.54570 2.58014 3.27983 3.39250 3.44493 3.80599 3.84568 3.90661 4.01078 4.02635 4.11256 4.20266 4.25611 4.32310 4.37095 4.37922 4.43695 4.48331 4.57955 4.63603 4.69836 4.71965 4.73912 4.85327 4.90820 4.98733 4.99260 5.07928 5.13641 5.19419 5.25654 5.32682 5.39386 5.44109 5.51371 5.69178 5.70812 6.29189 6.31330 6.48711 7.22030 7.36970 8.10029 8.38777 9.28202 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010537 B = 0.003246 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.642809 B = 8624.903660 C =10490.284019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.344 6.344 3 C 0.080 3.920 4 C -0.182 4.182 5 C -0.075 4.075 6 C -0.122 4.122 7 C -0.083 4.083 8 C -0.057 4.057 9 C -0.123 4.123 10 C 0.509 3.491 11 O -0.585 6.585 12 N -0.599 5.599 13 C 0.084 3.916 14 C 0.116 3.884 15 C 0.150 3.850 16 H 0.018 0.982 17 C -0.152 4.152 18 N -0.724 5.724 19 C -0.233 4.233 20 H 0.057 0.943 21 C -0.063 4.063 22 N -0.958 5.958 23 Si 0.957 3.043 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.289 1.289 27 C 0.026 3.974 28 F -0.157 7.157 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.034 0.966 46 H 0.056 0.944 47 H 0.379 0.621 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.484 15.764 8.611 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.034 3.966 4 C -0.200 4.200 5 C -0.093 4.093 6 C -0.140 4.140 7 C -0.084 4.084 8 C -0.094 4.094 9 C -0.162 4.162 10 C 0.299 3.701 11 O -0.467 6.467 12 N -0.329 5.329 13 C -0.059 4.059 14 C -0.008 4.008 15 C 0.041 3.959 16 H 0.036 0.964 17 C -0.212 4.212 18 N -0.367 5.367 19 C -0.366 4.366 20 H 0.075 0.925 21 C -0.256 4.256 22 N -0.608 5.608 23 Si 0.787 3.213 24 H -0.203 1.203 25 H -0.222 1.222 26 H -0.216 1.216 27 C 0.006 3.994 28 F -0.136 7.136 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.093 0.907 32 H 0.184 0.816 33 H 0.190 0.810 34 H 0.180 0.820 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.145 0.855 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.214 0.786 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.051 15.420 9.210 25.465 hybrid contribution 0.137 -2.006 -0.359 2.042 sum -17.913 13.415 8.851 24.066 Atomic orbital electron populations 1.23423 0.75593 1.05688 1.02939 1.86125 1.24309 1.26545 1.88818 1.19262 0.90367 0.86841 1.00094 1.21521 1.01576 0.90691 1.06239 1.21468 0.94207 0.98188 0.95423 1.21248 0.94158 0.97506 1.01053 1.19845 0.96200 0.91371 1.00950 1.20168 0.89383 1.04184 0.95711 1.21597 0.90513 1.05033 0.99084 1.21025 0.91032 0.75199 0.82890 1.90621 1.71664 1.52242 1.32146 1.47751 1.07033 1.70855 1.07299 1.21918 0.97146 1.02050 0.84754 1.21751 0.79304 0.96200 1.03496 1.20808 0.93069 0.91044 0.91001 0.96418 1.22207 0.96755 1.00711 1.01516 1.42533 1.74683 1.02532 1.16956 1.19449 1.32760 0.84803 0.99557 0.92485 1.25246 1.02615 1.01089 0.96608 1.69739 1.49471 1.34794 1.06842 0.85318 0.76782 0.82065 0.77104 1.20336 1.22241 1.21632 1.17460 0.87039 0.82793 1.12070 1.91448 1.77179 1.50324 1.94613 0.90886 0.86924 0.90692 0.81577 0.80973 0.82013 0.88117 0.92997 0.90242 0.85503 0.89531 0.91819 0.91580 0.88761 0.89410 0.91379 0.94699 0.92471 0.78594 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -8.50 10.36 -93.08 -0.96 -9.47 16 3 C 0.08 1.93 6.69 22.53 0.15 2.09 16 4 C -0.18 -2.74 9.04 22.35 0.20 -2.53 16 5 C -0.08 -0.90 10.04 22.26 0.22 -0.68 16 6 C -0.12 -1.91 9.68 22.28 0.22 -1.69 16 7 C -0.08 -1.98 5.14 -19.84 -0.10 -2.08 16 8 C -0.06 -1.54 4.41 29.85 0.13 -1.41 16 9 C -0.12 -3.45 4.23 29.85 0.13 -3.32 16 10 C 0.51 17.90 7.67 87.66 0.67 18.58 16 11 O -0.59 -24.09 15.56 -3.03 -0.05 -24.13 16 12 N -0.60 -20.41 2.73 -846.76 -2.31 -22.72 16 13 C 0.08 2.57 9.86 127.77 1.26 3.83 16 14 C 0.12 3.96 5.05 86.38 0.44 4.40 16 15 C 0.15 6.32 3.20 44.99 0.14 6.47 16 16 H 0.02 0.86 8.08 -2.39 -0.02 0.84 16 17 C -0.15 -5.55 9.49 71.98 0.68 -4.87 16 18 N -0.72 -36.19 4.56 -322.92 -1.47 -37.67 16 19 C -0.23 -13.33 9.93 84.03 0.83 -12.50 16 20 H 0.06 3.32 7.83 -2.91 -0.02 3.30 16 21 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 22 N -0.96 -56.88 13.06 21.65 0.28 -56.59 16 23 Si 0.96 47.76 29.55 68.60 2.03 49.79 16 24 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 26 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 27 C 0.03 0.76 7.25 22.46 0.16 0.92 16 28 F -0.16 -5.81 16.41 44.97 0.74 -5.08 16 29 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 30 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 32 H 0.17 1.37 6.30 -2.91 -0.02 1.35 16 33 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 34 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.10 2.39 8.01 -2.39 -0.02 2.37 16 36 H 0.05 1.74 7.74 -2.38 -0.02 1.72 16 37 H 0.08 2.55 7.40 -2.39 -0.02 2.53 16 38 H 0.13 2.61 8.11 -2.39 -0.02 2.59 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 2.35 5.62 -2.39 -0.01 2.33 16 41 H 0.07 2.05 6.44 -2.39 -0.02 2.03 16 42 H 0.09 2.79 8.07 -2.39 -0.02 2.77 16 43 H 0.09 2.88 7.42 -2.39 -0.02 2.86 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.38 19.22 5.33 -92.71 -0.49 18.73 16 48 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -77.32 397.36 5.45 -71.87 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.47 Total: 28.61 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 6.72 Total: 5.39 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -3.50 Total: -116.98 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.01 Total: -33.60 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.74 Total: -5.08 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -77.32 5.45 -71.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331469953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.488 kcal (2) G-P(sol) polarization free energy of solvation -77.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds