Wall clock time and date at job start Tue Mar 31 2020 21:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47443 * 2 1 4 4 C 1.53000 * 109.47495 * 239.99779 * 2 1 3 5 5 N 1.46493 * 109.47637 * 184.99964 * 4 2 1 6 6 C 1.46494 * 120.00444 * 269.72749 * 5 4 2 7 7 C 1.34784 * 119.99864 * 90.00039 * 5 4 2 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 5 4 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 5 4 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47298 * 179.97438 * 11 10 9 13 13 C 1.35948 * 117.00212 * 179.97438 * 12 11 10 14 14 C 1.38706 * 120.02901 * 359.72868 * 13 12 11 15 15 C 1.38146 * 119.96944 * 179.79266 * 14 13 12 16 16 C 1.38460 * 120.02940 * 0.48006 * 15 14 13 17 17 F 1.35100 * 119.97018 * 179.72894 * 16 15 14 18 18 C 1.38456 * 120.05850 * 359.74726 * 16 15 14 19 19 C 1.38149 * 120.03084 * 0.02562 * 18 16 15 20 20 N 1.46508 * 109.47068 * 119.99937 * 2 1 3 21 21 C 1.36932 * 119.99887 * 275.00166 * 20 2 1 22 22 H 1.07998 * 120.00231 * 359.97438 * 21 20 2 23 23 C 1.38818 * 119.99759 * 179.97438 * 21 20 2 24 24 N 1.31610 * 119.99998 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99880 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47123 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47163 * 120.00221 * 25 23 21 28 28 H 1.48497 * 109.47238 * 240.00228 * 25 23 21 29 29 H 1.09000 * 109.47159 * 300.00162 * 1 2 3 30 30 H 1.09001 * 109.47066 * 59.99820 * 1 2 3 31 31 H 1.09000 * 109.47443 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46747 * 64.99793 * 4 2 1 33 33 H 1.08996 * 109.47074 * 305.00519 * 4 2 1 34 34 H 1.08995 * 109.47693 * 270.27497 * 6 5 4 35 35 H 1.09003 * 109.47006 * 30.27410 * 6 5 4 36 36 H 1.09004 * 109.47665 * 150.27102 * 6 5 4 37 37 H 1.08998 * 109.47224 * 299.99701 * 9 7 5 38 38 H 1.09002 * 109.47054 * 60.00213 * 9 7 5 39 39 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 40 40 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 41 41 H 1.09000 * 109.46966 * 300.00313 * 11 10 9 42 42 H 1.09002 * 109.46807 * 60.00291 * 11 10 9 43 43 H 1.07998 * 120.01179 * 359.97438 * 14 13 12 44 44 H 1.07999 * 119.98831 * 180.21318 * 15 14 13 45 45 H 1.08000 * 119.98201 * 179.97438 * 18 16 15 46 46 H 1.07997 * 120.01446 * 179.97438 * 19 18 16 47 47 H 0.96999 * 119.99378 * 94.99936 * 20 2 1 48 48 H 0.96998 * 120.00138 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3344 0.2310 -1.7665 7 6 4.0758 -1.8988 -0.6115 8 8 3.3850 -2.7742 -0.1346 9 6 5.5776 -2.0099 -0.5566 10 6 5.9673 -3.3110 0.1478 11 6 7.4921 -3.4242 0.2029 12 8 7.8561 -4.6390 0.8614 13 6 9.1847 -4.8950 0.9943 14 6 10.1177 -3.9977 0.4959 15 6 11.4674 -4.2569 0.6355 16 6 11.8890 -5.4166 1.2636 17 9 13.2092 -5.6715 1.3945 18 6 10.9587 -6.3154 1.7573 19 6 9.6083 -6.0563 1.6233 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8926 1.0405 2.4242 23 6 2.6113 -0.6620 3.5093 24 7 2.9243 -1.9390 3.4502 25 14 2.7903 0.2700 5.1183 26 1 2.3775 1.6827 4.9205 27 1 1.9292 -0.3577 6.1524 28 1 4.2071 0.2262 5.5607 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2951 34 1 4.5381 0.0038 -2.8129 35 1 3.8114 1.1849 -1.6971 36 1 5.2745 0.2915 -1.2182 37 1 5.9791 -2.0106 -1.5699 38 1 5.9847 -1.1625 -0.0050 39 1 5.5659 -3.3099 1.1612 40 1 5.5602 -4.1586 -0.4035 41 1 7.8933 -3.4254 -0.8106 42 1 7.8996 -2.5765 0.7540 43 1 9.7890 -3.0954 0.0017 44 1 12.1941 -3.5568 0.2506 45 1 11.2889 -7.2197 2.2466 46 1 8.8829 -6.7578 2.0081 47 1 2.2490 -1.6318 1.1526 48 1 3.2469 -2.3965 4.2424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331519135.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:51 Heat of formation + Delta-G solvation = -83.444798 kcal Electronic energy + Delta-G solvation = -29059.232433 eV Core-core repulsion = 24836.502910 eV Total energy + Delta-G solvation = -4222.729523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.00846 -40.26748 -39.48337 -37.49322 -36.04001 -34.34810 -33.57188 -31.89501 -31.47086 -29.65617 -28.67946 -27.59441 -26.83008 -25.10145 -23.66736 -23.36690 -22.45688 -21.39481 -19.91857 -18.83841 -18.31180 -17.55991 -17.25719 -16.82741 -16.44356 -16.23755 -15.73122 -15.64826 -15.31512 -14.94119 -14.62949 -14.31451 -13.90351 -13.86059 -13.70179 -13.36371 -13.12840 -12.97302 -12.74083 -12.61527 -12.36141 -12.22202 -12.01723 -11.96649 -11.82175 -11.44568 -11.35442 -11.23596 -11.11593 -10.86133 -10.80531 -10.62126 -10.48032 -10.33448 -9.97191 -9.53322 -9.44410 -9.17725 -8.81794 -8.28211 -8.06741 -6.79087 -5.60146 -2.89760 0.90667 1.00356 2.95268 3.24460 3.34624 3.46637 3.52188 3.54958 3.56797 4.08913 4.42762 4.52382 4.67132 4.78744 4.85193 4.92630 5.02532 5.10139 5.19625 5.27981 5.32340 5.41597 5.45759 5.50852 5.55752 5.62821 5.65558 5.70232 5.80620 5.86421 5.87831 5.91398 6.01736 6.04567 6.11970 6.25010 6.30516 6.41614 6.45929 6.59173 6.70138 6.83828 6.98263 7.17752 7.25037 7.79190 7.88215 8.56114 8.81428 9.68961 10.32411 10.71591 11.59910 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.002498 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.125757 B =11207.038088 C =12712.590415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.042 0.958 4 C 0.110 3.890 5 N -0.611 5.611 6 C 0.084 3.916 7 C 0.522 3.478 8 O -0.513 6.513 9 C -0.129 4.129 10 C -0.105 4.105 11 C 0.061 3.939 12 O -0.305 6.305 13 C 0.130 3.870 14 C -0.184 4.184 15 C -0.112 4.112 16 C 0.050 3.950 17 F -0.144 7.144 18 C -0.112 4.112 19 C -0.126 4.126 20 N -0.721 5.721 21 C -0.238 4.238 22 H 0.064 0.936 23 C -0.012 4.012 24 N -0.918 5.918 25 Si 0.897 3.103 26 H -0.283 1.283 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.399 0.601 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.308 -2.044 -12.959 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 H 0.060 0.940 4 C -0.013 4.013 5 N -0.346 5.346 6 C -0.059 4.059 7 C 0.310 3.690 8 O -0.387 6.387 9 C -0.169 4.169 10 C -0.143 4.143 11 C -0.014 4.014 12 O -0.218 6.218 13 C 0.084 3.916 14 C -0.203 4.203 15 C -0.131 4.131 16 C 0.031 3.969 17 F -0.123 7.123 18 C -0.131 4.131 19 C -0.145 4.145 20 N -0.367 5.367 21 C -0.370 4.370 22 H 0.082 0.918 23 C -0.209 4.209 24 N -0.566 5.566 25 Si 0.729 3.271 26 H -0.208 1.208 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.157 0.843 44 H 0.154 0.846 45 H 0.159 0.841 46 H 0.161 0.839 47 H 0.238 0.762 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.833 -2.543 -12.505 18.820 hybrid contribution 0.510 0.684 0.952 1.278 sum 14.343 -1.859 -11.552 18.510 Atomic orbital electron populations 1.22416 0.99225 1.00960 0.99869 1.20636 0.91961 0.95497 0.87665 0.94034 1.21812 0.79392 1.02010 0.98078 1.47577 1.06660 1.21201 1.59123 1.21670 0.95715 0.91289 0.97274 1.20188 0.89986 0.81575 0.77298 1.90713 1.64433 1.39811 1.43715 1.21444 0.94165 0.99534 1.01736 1.21252 0.91206 0.97319 1.04548 1.22939 0.97558 0.84824 0.96064 1.86156 1.19671 1.41675 1.74261 1.19108 0.83385 0.94119 0.94980 1.21171 0.92542 1.01285 1.05307 1.20923 0.96305 0.96346 0.99502 1.17567 0.77757 0.96955 1.04651 1.91479 1.32042 1.94302 1.94497 1.20953 0.91939 0.99724 1.00497 1.20352 0.95261 0.96845 1.02014 1.42738 1.77617 1.11799 1.04590 1.19227 1.36494 0.93591 0.87710 0.91790 1.24724 1.02648 0.95901 0.97615 1.69744 1.50477 1.08248 1.28120 0.86271 0.77189 0.78771 0.84889 1.20826 1.22018 1.22115 0.92694 0.94680 0.93381 0.91289 0.90354 0.93419 0.91342 0.91407 0.89753 0.88822 0.88559 0.90278 0.92125 0.91730 0.84348 0.84591 0.84148 0.83947 0.76236 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.49 37.16 0.35 -2.66 16 2 C 0.15 3.09 3.20 -67.93 -0.22 2.88 16 3 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 4 C 0.11 1.84 5.14 -4.05 -0.02 1.82 16 5 N -0.61 -9.75 2.77 -181.58 -0.50 -10.26 16 6 C 0.08 0.94 10.24 59.84 0.61 1.56 16 7 C 0.52 9.47 6.98 -10.98 -0.08 9.40 16 8 O -0.51 -11.73 13.28 5.56 0.07 -11.66 16 9 C -0.13 -1.74 4.25 -27.89 -0.12 -1.86 16 10 C -0.11 -1.55 4.87 -26.73 -0.13 -1.68 16 11 C 0.06 0.71 4.74 37.16 0.18 0.89 16 12 O -0.30 -4.15 10.14 -19.58 -0.20 -4.35 16 13 C 0.13 1.55 6.69 -39.24 -0.26 1.29 16 14 C -0.18 -1.86 9.04 -39.44 -0.36 -2.22 16 15 C -0.11 -1.07 10.02 -39.53 -0.40 -1.47 16 16 C 0.05 0.52 7.30 -39.42 -0.29 0.24 16 17 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 18 C -0.11 -1.10 10.02 -39.53 -0.40 -1.49 16 19 C -0.13 -1.36 9.98 -39.44 -0.39 -1.75 16 20 N -0.72 -18.63 4.52 -53.42 -0.24 -18.87 16 21 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 22 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.92 -28.50 13.06 55.49 0.72 -27.78 16 25 Si 0.90 22.80 29.55 -169.99 -5.02 17.77 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.08 1.44 7.42 -51.93 -0.39 1.05 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 36 H 0.07 0.69 6.44 -51.93 -0.33 0.36 16 37 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 38 H 0.09 1.22 7.40 -51.93 -0.38 0.83 16 39 H 0.10 1.83 8.10 -51.93 -0.42 1.41 16 40 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 41 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 42 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 43 H 0.14 1.13 6.30 -52.49 -0.33 0.80 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 47 H 0.40 11.24 5.01 -40.82 -0.20 11.03 16 48 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 398.60 15.07 6.01 6.01 Total: -1.00 -35.19 398.60 -8.34 -43.54 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.46 Total: 9.57 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.76 Total: -2.42 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.02 Total: -56.91 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.12 Total: -16.00 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.19 -8.34 -43.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331519135.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.909 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds