Wall clock time and date at job start Tue Mar 31 2020 21:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47443 * 2 1 4 4 C 1.53000 * 109.47495 * 239.99779 * 2 1 3 5 5 N 1.46493 * 109.47637 * 184.99964 * 4 2 1 6 6 C 1.46494 * 120.00444 * 269.72749 * 5 4 2 7 7 C 1.34784 * 119.99864 * 90.00039 * 5 4 2 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 5 4 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 5 4 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47298 * 179.97438 * 11 10 9 13 13 C 1.35948 * 117.00212 * 179.97438 * 12 11 10 14 14 C 1.38706 * 120.02901 * 359.72868 * 13 12 11 15 15 C 1.38146 * 119.96944 * 179.79266 * 14 13 12 16 16 C 1.38460 * 120.02940 * 0.48006 * 15 14 13 17 17 F 1.35100 * 119.97018 * 179.72894 * 16 15 14 18 18 C 1.38456 * 120.05850 * 359.74726 * 16 15 14 19 19 C 1.38149 * 120.03084 * 0.02562 * 18 16 15 20 20 N 1.46508 * 109.47068 * 119.99937 * 2 1 3 21 21 C 1.36932 * 119.99887 * 275.00166 * 20 2 1 22 22 H 1.07998 * 120.00231 * 359.97438 * 21 20 2 23 23 C 1.38818 * 119.99759 * 179.97438 * 21 20 2 24 24 N 1.31610 * 119.99998 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99880 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47123 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47163 * 120.00221 * 25 23 21 28 28 H 1.48497 * 109.47238 * 240.00228 * 25 23 21 29 29 H 1.09000 * 109.47159 * 300.00162 * 1 2 3 30 30 H 1.09001 * 109.47066 * 59.99820 * 1 2 3 31 31 H 1.09000 * 109.47443 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46747 * 64.99793 * 4 2 1 33 33 H 1.08996 * 109.47074 * 305.00519 * 4 2 1 34 34 H 1.08995 * 109.47693 * 270.27497 * 6 5 4 35 35 H 1.09003 * 109.47006 * 30.27410 * 6 5 4 36 36 H 1.09004 * 109.47665 * 150.27102 * 6 5 4 37 37 H 1.08998 * 109.47224 * 299.99701 * 9 7 5 38 38 H 1.09002 * 109.47054 * 60.00213 * 9 7 5 39 39 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 40 40 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 41 41 H 1.09000 * 109.46966 * 300.00313 * 11 10 9 42 42 H 1.09002 * 109.46807 * 60.00291 * 11 10 9 43 43 H 1.07998 * 120.01179 * 359.97438 * 14 13 12 44 44 H 1.07999 * 119.98831 * 180.21318 * 15 14 13 45 45 H 1.08000 * 119.98201 * 179.97438 * 18 16 15 46 46 H 1.07997 * 120.01446 * 179.97438 * 19 18 16 47 47 H 0.96999 * 119.99378 * 94.99936 * 20 2 1 48 48 H 0.96998 * 120.00138 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3344 0.2310 -1.7665 7 6 4.0758 -1.8988 -0.6115 8 8 3.3850 -2.7742 -0.1346 9 6 5.5776 -2.0099 -0.5566 10 6 5.9673 -3.3110 0.1478 11 6 7.4921 -3.4242 0.2029 12 8 7.8561 -4.6390 0.8614 13 6 9.1847 -4.8950 0.9943 14 6 10.1177 -3.9977 0.4959 15 6 11.4674 -4.2569 0.6355 16 6 11.8890 -5.4166 1.2636 17 9 13.2092 -5.6715 1.3945 18 6 10.9587 -6.3154 1.7573 19 6 9.6083 -6.0563 1.6233 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8926 1.0405 2.4242 23 6 2.6113 -0.6620 3.5093 24 7 2.9243 -1.9390 3.4502 25 14 2.7903 0.2700 5.1183 26 1 2.3775 1.6827 4.9205 27 1 1.9292 -0.3577 6.1524 28 1 4.2071 0.2262 5.5607 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2951 34 1 4.5381 0.0038 -2.8129 35 1 3.8114 1.1849 -1.6971 36 1 5.2745 0.2915 -1.2182 37 1 5.9791 -2.0106 -1.5699 38 1 5.9847 -1.1625 -0.0050 39 1 5.5659 -3.3099 1.1612 40 1 5.5602 -4.1586 -0.4035 41 1 7.8933 -3.4254 -0.8106 42 1 7.8996 -2.5765 0.7540 43 1 9.7890 -3.0954 0.0017 44 1 12.1941 -3.5568 0.2506 45 1 11.2889 -7.2197 2.2466 46 1 8.8829 -6.7578 2.0081 47 1 2.2490 -1.6318 1.1526 48 1 3.2469 -2.3965 4.2424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331519135.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:50 Heat of formation + Delta-G solvation = -105.489809 kcal Electronic energy + Delta-G solvation = -29060.188377 eV Core-core repulsion = 24836.502910 eV Total energy + Delta-G solvation = -4223.685467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.82563 -41.16515 -40.78249 -38.37105 -37.59217 -35.89214 -34.78091 -33.78616 -32.24181 -30.70160 -30.38398 -28.77300 -27.87006 -26.31486 -25.61466 -24.34516 -23.34593 -22.42473 -21.47330 -20.05695 -19.32533 -19.14020 -18.38191 -17.90597 -17.45387 -17.36350 -17.03231 -16.71336 -16.51880 -16.33843 -15.70152 -15.56086 -15.26116 -15.20852 -14.66287 -14.57487 -14.33029 -14.00202 -13.97094 -13.79381 -13.53053 -13.50247 -13.25721 -13.12165 -13.04747 -12.96398 -12.81511 -12.64522 -12.43641 -12.33051 -12.18030 -12.08402 -11.80090 -11.72107 -11.55875 -11.50888 -10.94892 -10.58752 -10.19688 -9.37233 -9.12270 -8.87782 -7.82155 -5.11355 0.15342 0.18877 1.43386 1.45008 1.54440 1.88169 2.05058 2.44237 2.55870 2.58738 3.31338 3.46684 3.63314 3.73770 3.81414 3.93616 3.99448 4.03589 4.11399 4.22339 4.24934 4.35700 4.38004 4.40441 4.48388 4.56065 4.61699 4.63536 4.68884 4.77886 4.84031 4.89887 4.96726 5.03210 5.10075 5.10450 5.12861 5.13035 5.21932 5.29082 5.33283 5.49700 5.56478 5.71637 5.83471 6.35821 6.39432 6.64824 7.41513 7.52294 8.30248 8.53936 9.38704 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.002498 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.125757 B =11207.038088 C =12712.590415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.048 0.952 4 C 0.115 3.885 5 N -0.613 5.613 6 C 0.075 3.925 7 C 0.504 3.496 8 O -0.575 6.575 9 C -0.118 4.118 10 C -0.098 4.098 11 C 0.066 3.934 12 O -0.334 6.334 13 C 0.108 3.892 14 C -0.182 4.182 15 C -0.110 4.110 16 C 0.037 3.963 17 F -0.148 7.148 18 C -0.111 4.111 19 C -0.140 4.140 20 N -0.738 5.738 21 C -0.232 4.232 22 H 0.070 0.930 23 C -0.078 4.078 24 N -0.958 5.958 25 Si 0.963 3.037 26 H -0.265 1.265 27 H -0.300 1.300 28 H -0.295 1.295 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.117 0.883 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.135 0.865 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.144 0.856 47 H 0.385 0.615 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.875 0.497 -15.233 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.066 0.934 4 C -0.008 4.008 5 N -0.345 5.345 6 C -0.066 4.066 7 C 0.294 3.706 8 O -0.454 6.454 9 C -0.158 4.158 10 C -0.136 4.136 11 C -0.008 4.008 12 O -0.248 6.248 13 C 0.062 3.938 14 C -0.201 4.201 15 C -0.128 4.128 16 C 0.018 3.982 17 F -0.127 7.127 18 C -0.130 4.130 19 C -0.158 4.158 20 N -0.382 5.382 21 C -0.365 4.365 22 H 0.088 0.912 23 C -0.270 4.270 24 N -0.609 5.609 25 Si 0.793 3.207 26 H -0.190 1.190 27 H -0.228 1.228 28 H -0.223 1.223 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.135 0.865 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.152 0.848 38 H 0.121 0.879 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.179 0.821 44 H 0.178 0.822 45 H 0.177 0.823 46 H 0.162 0.838 47 H 0.222 0.778 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 15.399 0.085 -14.840 21.386 hybrid contribution -0.024 -0.067 1.564 1.565 sum 15.375 0.018 -13.277 20.314 Atomic orbital electron populations 1.22266 0.97811 1.00375 1.01076 1.20983 0.92904 0.95578 0.87139 0.93408 1.21733 0.80165 1.00886 0.98045 1.47763 1.06810 1.21636 1.58306 1.22018 0.95415 0.90058 0.99152 1.21085 0.91782 0.81362 0.76402 1.90685 1.66064 1.42224 1.46422 1.21454 0.91084 0.98754 1.04460 1.21086 0.93606 0.97925 1.01017 1.22930 0.95009 0.84700 0.98174 1.86110 1.21031 1.42568 1.75084 1.19378 0.82993 0.95164 0.96226 1.21396 0.92319 1.01525 1.04811 1.21205 0.96614 0.96311 0.98694 1.17803 0.77654 0.97606 1.05127 1.91469 1.32302 1.94388 1.94579 1.21142 0.91371 1.00352 1.00099 1.20519 0.95880 0.97041 1.02406 1.43009 1.77939 1.11482 1.05802 1.19603 1.34363 0.93796 0.88703 0.91198 1.25502 1.03745 0.96736 1.01042 1.69953 1.52531 1.10037 1.28383 0.85217 0.76611 0.78243 0.80597 1.18965 1.22813 1.22285 0.94735 0.90116 0.94876 0.86464 0.92833 0.89816 0.90528 0.90355 0.84754 0.87897 0.94371 0.91635 0.88404 0.90692 0.82132 0.82192 0.82294 0.83807 0.77813 0.94818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 9.49 71.98 0.68 -4.83 16 2 C 0.14 5.63 3.20 44.99 0.14 5.77 16 3 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 4 C 0.12 3.66 5.14 86.38 0.44 4.11 16 5 N -0.61 -18.46 2.77 -846.78 -2.35 -20.81 16 6 C 0.08 1.38 10.24 127.77 1.31 2.69 16 7 C 0.50 18.39 6.98 87.65 0.61 19.00 16 8 O -0.57 -27.90 13.28 -3.04 -0.04 -27.94 16 9 C -0.12 -3.05 4.25 29.85 0.13 -2.93 16 10 C -0.10 -3.00 4.87 30.59 0.15 -2.85 16 11 C 0.07 1.48 4.74 71.98 0.34 1.83 16 12 O -0.33 -9.27 10.14 -92.97 -0.94 -10.21 16 13 C 0.11 2.53 6.69 22.49 0.15 2.68 16 14 C -0.18 -3.31 9.04 22.36 0.20 -3.11 16 15 C -0.11 -1.87 10.02 22.30 0.22 -1.65 16 16 C 0.04 0.73 7.30 22.37 0.16 0.89 16 17 F -0.15 -3.06 17.27 44.97 0.78 -2.29 16 18 C -0.11 -2.09 10.02 22.30 0.22 -1.87 16 19 C -0.14 -3.03 9.98 22.36 0.22 -2.81 16 20 N -0.74 -38.84 4.52 -322.93 -1.46 -40.30 16 21 C -0.23 -13.29 9.93 84.04 0.83 -12.45 16 22 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 23 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 24 N -0.96 -62.28 13.06 21.65 0.28 -61.99 16 25 Si 0.96 47.92 29.55 68.60 2.03 49.95 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 27 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 28 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.12 2.57 8.07 -2.39 -0.02 2.55 16 33 H 0.05 1.98 7.42 -2.39 -0.02 1.96 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.31 8.07 -2.39 -0.02 1.29 16 36 H 0.08 1.29 6.44 -2.38 -0.02 1.28 16 37 H 0.13 2.11 8.11 -2.39 -0.02 2.09 16 38 H 0.10 2.49 7.40 -2.39 -0.02 2.47 16 39 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 40 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 41 H 0.10 1.46 7.65 -2.39 -0.02 1.45 16 42 H 0.07 1.51 7.68 -2.39 -0.02 1.49 16 43 H 0.16 2.10 6.30 -2.91 -0.02 2.08 16 44 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 46 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 47 H 0.39 22.68 5.01 -92.71 -0.46 22.21 16 48 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -82.89 398.60 5.08 -77.81 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.49 Total: 35.50 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 6.30 Total: 0.29 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -3.53 Total: -123.10 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.98 Total: -38.15 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.29 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -82.89 5.08 -77.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331519135.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.685 kcal (2) G-P(sol) polarization free energy of solvation -82.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds