Wall clock time and date at job start Tue Mar 31 2020 21:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47213 * 2 1 4 4 C 1.52996 * 109.46926 * 120.00059 * 2 1 3 5 5 N 1.46499 * 109.47198 * 174.99671 * 4 2 1 6 6 C 1.46499 * 120.00136 * 270.00278 * 5 4 2 7 7 C 1.34784 * 119.99893 * 90.00083 * 5 4 2 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 5 4 10 10 C 1.53003 * 109.46624 * 180.02562 * 9 7 5 11 11 C 1.53003 * 109.46813 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.47196 * 179.97438 * 11 10 9 13 13 C 1.35938 * 116.99983 * 180.02562 * 12 11 10 14 14 C 1.38703 * 120.03212 * 359.72357 * 13 12 11 15 15 C 1.38157 * 119.97164 * 179.79250 * 14 13 12 16 16 C 1.38460 * 120.02721 * 0.48374 * 15 14 13 17 17 F 1.35093 * 119.97045 * 179.72643 * 16 15 14 18 18 C 1.38462 * 120.05919 * 359.74570 * 16 15 14 19 19 C 1.38144 * 120.02987 * 0.02562 * 18 16 15 20 20 N 1.46500 * 109.46982 * 239.99972 * 2 1 3 21 21 C 1.36942 * 119.99775 * 85.00284 * 20 2 1 22 22 H 1.07993 * 120.00158 * 359.97438 * 21 20 2 23 23 C 1.38818 * 119.99402 * 179.97438 * 21 20 2 24 24 N 1.31609 * 120.00288 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99270 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47412 * 60.00232 * 25 23 21 27 27 H 1.48505 * 109.46995 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47440 * 299.99622 * 25 23 21 29 29 H 1.08997 * 109.47149 * 300.00122 * 1 2 3 30 30 H 1.08999 * 109.47165 * 59.99911 * 1 2 3 31 31 H 1.09001 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47172 * 54.99909 * 4 2 1 33 33 H 1.08998 * 109.47554 * 294.99904 * 4 2 1 34 34 H 1.08999 * 109.47256 * 269.99572 * 6 5 4 35 35 H 1.08998 * 109.47416 * 29.99674 * 6 5 4 36 36 H 1.09008 * 109.47058 * 150.00274 * 6 5 4 37 37 H 1.09001 * 109.46809 * 299.99238 * 9 7 5 38 38 H 1.08993 * 109.47525 * 59.99679 * 9 7 5 39 39 H 1.09001 * 109.46782 * 299.99104 * 10 9 7 40 40 H 1.08993 * 109.47555 * 59.99547 * 10 9 7 41 41 H 1.08998 * 109.47446 * 299.99771 * 11 10 9 42 42 H 1.09001 * 109.47095 * 59.99865 * 11 10 9 43 43 H 1.07994 * 120.01923 * 0.02562 * 14 13 12 44 44 H 1.07996 * 119.98791 * 180.20817 * 15 14 13 45 45 H 1.08000 * 119.98275 * 179.97438 * 18 16 15 46 46 H 1.08004 * 120.01455 * 179.97438 * 19 18 16 47 47 H 0.97006 * 120.00056 * 264.99959 * 20 2 1 48 48 H 0.97005 * 119.99887 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.4999 -0.8265 1.1906 6 6 4.1257 -1.9920 0.5612 7 6 4.2675 0.1491 1.7156 8 8 3.7495 1.1138 2.2371 9 6 5.7694 0.0379 1.6607 10 6 6.3962 1.2671 2.3220 11 6 7.9210 1.1539 2.2668 12 8 8.5066 2.3022 2.8838 13 6 9.8643 2.3593 2.9186 14 6 10.6166 1.3284 2.3752 15 6 11.9964 1.3897 2.4074 16 6 12.6283 2.4748 2.9907 17 9 13.9776 2.5309 3.0265 18 6 11.8786 3.5023 3.5378 19 6 10.4988 3.4458 3.5027 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3758 22 1 1.8919 1.0403 -2.4243 23 6 2.6123 -0.6618 -3.5090 24 7 2.9262 -1.9385 -3.4497 25 14 2.7914 0.2704 -5.1179 26 1 3.7466 1.3927 -4.9361 27 1 3.3014 -0.6477 -6.1678 28 1 1.4693 0.8072 -5.5289 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1370 34 1 4.2821 -2.7689 1.3096 35 1 3.4756 -2.3723 -0.2268 36 1 5.0851 -1.7022 0.1325 37 1 6.0868 -0.8605 2.1901 38 1 6.0917 -0.0200 0.6212 39 1 6.0789 2.1657 1.7929 40 1 6.0739 1.3245 3.3615 41 1 8.2381 0.2553 2.7960 42 1 8.2437 1.0963 1.2272 43 1 10.1240 0.4800 1.9237 44 1 12.5824 0.5888 1.9813 45 1 12.3728 4.3479 3.9928 46 1 9.9142 4.2472 3.9299 47 1 2.2490 -1.6318 -1.1526 48 1 3.2502 -2.3956 -4.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331519136.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:55 Heat of formation + Delta-G solvation = -85.722938 kcal Electronic energy + Delta-G solvation = -28477.969728 eV Core-core repulsion = 24255.141417 eV Total energy + Delta-G solvation = -4222.828311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.11148 -40.42919 -39.64729 -37.65111 -36.41448 -34.24703 -33.84399 -32.05722 -31.59753 -29.80802 -28.92602 -27.72887 -26.71385 -25.26796 -23.82825 -23.42545 -22.58190 -21.59252 -20.15168 -18.98231 -18.42812 -17.65614 -17.32229 -17.04204 -16.65642 -16.45966 -15.85202 -15.73002 -15.42560 -15.04891 -14.73584 -14.51527 -14.08480 -13.99616 -13.80117 -13.47764 -13.29855 -13.18660 -12.80153 -12.67987 -12.35206 -12.25865 -12.19026 -12.06869 -11.84607 -11.61990 -11.40230 -11.34327 -11.26668 -11.04256 -10.86177 -10.74415 -10.71597 -10.39303 -10.11228 -9.68054 -9.56775 -9.47319 -8.95377 -8.42507 -8.17359 -6.98341 -5.81780 -3.08301 0.78236 0.87275 2.76501 2.95631 3.21655 3.40798 3.45470 3.45596 3.47486 3.97658 4.30271 4.40170 4.56434 4.59842 4.70176 4.73371 4.86300 4.92029 5.05534 5.15674 5.21359 5.31013 5.43696 5.48721 5.50545 5.52181 5.59435 5.67859 5.75516 5.78088 5.82517 5.87382 5.87851 5.96714 6.11482 6.14148 6.25997 6.28824 6.34261 6.36122 6.68145 6.79935 6.85928 7.06156 7.14518 7.67617 7.76509 8.38381 8.51271 9.49332 10.05375 10.41297 11.41181 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012466 B = 0.002097 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.569509 B =13348.960226 C =14682.766589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.051 0.949 4 C 0.110 3.890 5 N -0.595 5.595 6 C 0.080 3.920 7 C 0.516 3.484 8 O -0.551 6.551 9 C -0.136 4.136 10 C -0.102 4.102 11 C 0.058 3.942 12 O -0.308 6.308 13 C 0.127 3.873 14 C -0.182 4.182 15 C -0.111 4.111 16 C 0.053 3.947 17 F -0.143 7.143 18 C -0.113 4.113 19 C -0.126 4.126 20 N -0.720 5.720 21 C -0.231 4.231 22 H 0.067 0.933 23 C -0.014 4.014 24 N -0.937 5.937 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.381 0.619 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.778 2.642 15.233 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.069 0.931 4 C -0.013 4.013 5 N -0.326 5.326 6 C -0.063 4.063 7 C 0.304 3.696 8 O -0.429 6.429 9 C -0.176 4.176 10 C -0.140 4.140 11 C -0.017 4.017 12 O -0.222 6.222 13 C 0.081 3.919 14 C -0.201 4.201 15 C -0.130 4.130 16 C 0.034 3.966 17 F -0.122 7.122 18 C -0.132 4.132 19 C -0.145 4.145 20 N -0.363 5.363 21 C -0.362 4.362 22 H 0.085 0.915 23 C -0.209 4.209 24 N -0.586 5.586 25 Si 0.736 3.264 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.159 0.841 46 H 0.160 0.840 47 H 0.216 0.784 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.411 3.373 15.427 21.379 hybrid contribution 0.472 -0.203 -1.336 1.432 sum 14.883 3.170 14.090 20.739 Atomic orbital electron populations 1.22369 0.98824 1.00819 1.00284 1.20663 0.91965 0.96310 0.86734 0.93059 1.21829 0.78974 1.01091 0.99424 1.47609 1.06734 1.21391 1.56888 1.21900 0.99835 0.86956 0.97617 1.20335 0.89068 0.82264 0.77944 1.90667 1.75232 1.31261 1.45779 1.21528 0.93149 0.99434 1.03505 1.21225 0.90496 0.99020 1.03247 1.22951 0.94524 0.86735 0.97500 1.86110 1.16424 1.44247 1.75375 1.19070 0.82998 0.94363 0.95432 1.21193 0.93844 1.00181 1.04907 1.20962 0.94663 0.97747 0.99640 1.17585 0.77068 0.97420 1.04567 1.91486 1.29066 1.96625 1.95013 1.20961 0.93362 0.98544 1.00313 1.20323 0.93260 0.98266 1.02623 1.42471 1.78207 1.10385 1.05269 1.19195 1.35873 0.93808 0.87314 0.91463 1.24657 1.02448 0.95984 0.97853 1.69610 1.51457 1.08577 1.28957 0.86306 0.77806 0.78615 0.83712 1.21408 1.21758 1.21375 0.94294 0.92590 0.93488 0.91049 0.90205 0.93649 0.89006 0.91281 0.88990 0.88271 0.89803 0.90080 0.91725 0.91499 0.84246 0.84447 0.84103 0.84035 0.78382 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.16 0.35 -2.56 16 2 C 0.15 3.07 3.20 -67.93 -0.22 2.85 16 3 H 0.05 1.15 8.08 -51.93 -0.42 0.73 16 4 C 0.11 1.83 5.05 -4.04 -0.02 1.81 16 5 N -0.60 -9.55 2.73 -181.57 -0.50 -10.05 16 6 C 0.08 1.15 9.86 59.85 0.59 1.74 16 7 C 0.52 8.32 7.67 -10.98 -0.08 8.24 16 8 O -0.55 -10.62 15.56 5.56 0.09 -10.53 16 9 C -0.14 -1.58 4.26 -27.88 -0.12 -1.70 16 10 C -0.10 -1.16 4.87 -26.73 -0.13 -1.29 16 11 C 0.06 0.53 4.74 37.16 0.18 0.71 16 12 O -0.31 -3.38 10.14 -19.54 -0.20 -3.58 16 13 C 0.13 1.26 6.69 -39.23 -0.26 1.00 16 14 C -0.18 -1.58 9.04 -39.44 -0.36 -1.94 16 15 C -0.11 -0.94 10.02 -39.53 -0.40 -1.34 16 16 C 0.05 0.49 7.30 -39.42 -0.29 0.20 16 17 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 18 C -0.11 -0.93 10.02 -39.53 -0.40 -1.33 16 19 C -0.13 -1.11 9.98 -39.44 -0.39 -1.51 16 20 N -0.72 -16.95 4.57 -53.43 -0.24 -17.19 16 21 C -0.23 -6.19 9.93 -15.05 -0.15 -6.33 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.94 -26.53 13.06 55.49 0.72 -25.81 16 25 Si 0.90 21.97 29.55 -169.99 -5.02 16.94 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.07 8.07 -51.93 -0.42 0.66 16 33 H 0.08 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.58 5.62 -51.93 -0.29 1.29 16 36 H 0.07 0.93 6.44 -51.92 -0.33 0.59 16 37 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 38 H 0.10 1.13 7.39 -51.93 -0.38 0.74 16 39 H 0.08 1.12 8.10 -51.93 -0.42 0.69 16 40 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 41 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 42 H 0.07 0.56 7.67 -51.93 -0.40 0.17 16 43 H 0.14 0.97 6.30 -52.49 -0.33 0.64 16 44 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 47 H 0.38 9.14 5.33 -40.82 -0.22 8.92 16 48 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -31.73 398.97 -8.23 -39.96 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.35 Total: 7.55 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.79 Total: -1.93 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.01 Total: -53.05 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.11 Total: -14.11 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.73 -8.23 -39.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331519136.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.763 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds