Wall clock time and date at job start Tue Mar 31 2020 21:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47213 * 2 1 4 4 C 1.52996 * 109.46926 * 120.00059 * 2 1 3 5 5 N 1.46499 * 109.47198 * 174.99671 * 4 2 1 6 6 C 1.46499 * 120.00136 * 270.00278 * 5 4 2 7 7 C 1.34784 * 119.99893 * 90.00083 * 5 4 2 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 5 4 10 10 C 1.53003 * 109.46624 * 180.02562 * 9 7 5 11 11 C 1.53003 * 109.46813 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.47196 * 179.97438 * 11 10 9 13 13 C 1.35938 * 116.99983 * 180.02562 * 12 11 10 14 14 C 1.38703 * 120.03212 * 359.72357 * 13 12 11 15 15 C 1.38157 * 119.97164 * 179.79250 * 14 13 12 16 16 C 1.38460 * 120.02721 * 0.48374 * 15 14 13 17 17 F 1.35093 * 119.97045 * 179.72643 * 16 15 14 18 18 C 1.38462 * 120.05919 * 359.74570 * 16 15 14 19 19 C 1.38144 * 120.02987 * 0.02562 * 18 16 15 20 20 N 1.46500 * 109.46982 * 239.99972 * 2 1 3 21 21 C 1.36942 * 119.99775 * 85.00284 * 20 2 1 22 22 H 1.07993 * 120.00158 * 359.97438 * 21 20 2 23 23 C 1.38818 * 119.99402 * 179.97438 * 21 20 2 24 24 N 1.31609 * 120.00288 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99270 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47412 * 60.00232 * 25 23 21 27 27 H 1.48505 * 109.46995 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47440 * 299.99622 * 25 23 21 29 29 H 1.08997 * 109.47149 * 300.00122 * 1 2 3 30 30 H 1.08999 * 109.47165 * 59.99911 * 1 2 3 31 31 H 1.09001 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47172 * 54.99909 * 4 2 1 33 33 H 1.08998 * 109.47554 * 294.99904 * 4 2 1 34 34 H 1.08999 * 109.47256 * 269.99572 * 6 5 4 35 35 H 1.08998 * 109.47416 * 29.99674 * 6 5 4 36 36 H 1.09008 * 109.47058 * 150.00274 * 6 5 4 37 37 H 1.09001 * 109.46809 * 299.99238 * 9 7 5 38 38 H 1.08993 * 109.47525 * 59.99679 * 9 7 5 39 39 H 1.09001 * 109.46782 * 299.99104 * 10 9 7 40 40 H 1.08993 * 109.47555 * 59.99547 * 10 9 7 41 41 H 1.08998 * 109.47446 * 299.99771 * 11 10 9 42 42 H 1.09001 * 109.47095 * 59.99865 * 11 10 9 43 43 H 1.07994 * 120.01923 * 0.02562 * 14 13 12 44 44 H 1.07996 * 119.98791 * 180.20817 * 15 14 13 45 45 H 1.08000 * 119.98275 * 179.97438 * 18 16 15 46 46 H 1.08004 * 120.01455 * 179.97438 * 19 18 16 47 47 H 0.97006 * 120.00056 * 264.99959 * 20 2 1 48 48 H 0.97005 * 119.99887 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.4999 -0.8265 1.1906 6 6 4.1257 -1.9920 0.5612 7 6 4.2675 0.1491 1.7156 8 8 3.7495 1.1138 2.2371 9 6 5.7694 0.0379 1.6607 10 6 6.3962 1.2671 2.3220 11 6 7.9210 1.1539 2.2668 12 8 8.5066 2.3022 2.8838 13 6 9.8643 2.3593 2.9186 14 6 10.6166 1.3284 2.3752 15 6 11.9964 1.3897 2.4074 16 6 12.6283 2.4748 2.9907 17 9 13.9776 2.5309 3.0265 18 6 11.8786 3.5023 3.5378 19 6 10.4988 3.4458 3.5027 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3758 22 1 1.8919 1.0403 -2.4243 23 6 2.6123 -0.6618 -3.5090 24 7 2.9262 -1.9385 -3.4497 25 14 2.7914 0.2704 -5.1179 26 1 3.7466 1.3927 -4.9361 27 1 3.3014 -0.6477 -6.1678 28 1 1.4693 0.8072 -5.5289 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1370 34 1 4.2821 -2.7689 1.3096 35 1 3.4756 -2.3723 -0.2268 36 1 5.0851 -1.7022 0.1325 37 1 6.0868 -0.8605 2.1901 38 1 6.0917 -0.0200 0.6212 39 1 6.0789 2.1657 1.7929 40 1 6.0739 1.3245 3.3615 41 1 8.2381 0.2553 2.7960 42 1 8.2437 1.0963 1.2272 43 1 10.1240 0.4800 1.9237 44 1 12.5824 0.5888 1.9813 45 1 12.3728 4.3479 3.9928 46 1 9.9142 4.2472 3.9299 47 1 2.2490 -1.6318 -1.1526 48 1 3.2502 -2.3956 -4.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331519136.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:55 Heat of formation + Delta-G solvation = -103.330120 kcal Electronic energy + Delta-G solvation = -28478.733233 eV Core-core repulsion = 24255.141417 eV Total energy + Delta-G solvation = -4223.591815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.82839 -41.18520 -40.85600 -38.38696 -37.91397 -35.76508 -34.86193 -33.85711 -32.23862 -30.81761 -30.42421 -28.78864 -27.90407 -26.53790 -25.51638 -24.33678 -23.34451 -22.45108 -21.66414 -20.12527 -19.27681 -19.21824 -18.40446 -18.01064 -17.48684 -17.42750 -16.99682 -16.76477 -16.55222 -16.37295 -15.72704 -15.60092 -15.46586 -15.24171 -14.68975 -14.61361 -14.48364 -14.02679 -13.88031 -13.78545 -13.63601 -13.54681 -13.23701 -13.19102 -13.13085 -12.96761 -12.78077 -12.64522 -12.47350 -12.41368 -12.21267 -12.19960 -11.84593 -11.72947 -11.60440 -11.52416 -10.99163 -10.74632 -10.19338 -9.51079 -9.12235 -8.93135 -7.91589 -5.16640 0.15643 0.18944 1.47463 1.47824 1.53957 1.70622 1.96463 2.35987 2.56093 2.57316 3.32191 3.41780 3.56620 3.70947 3.81234 3.89429 3.91761 4.03260 4.07784 4.12904 4.20644 4.31666 4.38005 4.40991 4.42911 4.48020 4.63679 4.64720 4.66581 4.74955 4.76803 4.90500 4.90731 5.00528 5.06952 5.11876 5.13809 5.18885 5.23361 5.25800 5.26670 5.40739 5.53507 5.70704 5.71566 6.31502 6.37013 6.53507 7.26419 7.39421 8.12123 8.41493 9.30560 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012466 B = 0.002097 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.569509 B =13348.960226 C =14682.766589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.152 3.848 3 H 0.020 0.980 4 C 0.116 3.884 5 N -0.600 5.600 6 C 0.082 3.918 7 C 0.505 3.495 8 O -0.591 6.591 9 C -0.127 4.127 10 C -0.095 4.095 11 C 0.060 3.940 12 O -0.328 6.328 13 C 0.110 3.890 14 C -0.184 4.184 15 C -0.113 4.113 16 C 0.036 3.964 17 F -0.150 7.150 18 C -0.112 4.112 19 C -0.135 4.135 20 N -0.723 5.723 21 C -0.235 4.235 22 H 0.058 0.942 23 C -0.062 4.062 24 N -0.958 5.958 25 Si 0.959 3.041 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.105 0.895 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.160 0.840 46 H 0.150 0.850 47 H 0.379 0.621 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.779 1.713 15.820 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 H 0.038 0.962 4 C -0.008 4.008 5 N -0.331 5.331 6 C -0.060 4.060 7 C 0.295 3.705 8 O -0.472 6.472 9 C -0.166 4.166 10 C -0.134 4.134 11 C -0.014 4.014 12 O -0.242 6.242 13 C 0.065 3.935 14 C -0.202 4.202 15 C -0.132 4.132 16 C 0.017 3.983 17 F -0.129 7.129 18 C -0.130 4.130 19 C -0.154 4.154 20 N -0.366 5.366 21 C -0.367 4.367 22 H 0.076 0.924 23 C -0.255 4.255 24 N -0.608 5.608 25 Si 0.789 3.211 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.147 0.853 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.176 0.824 44 H 0.173 0.827 45 H 0.178 0.822 46 H 0.168 0.832 47 H 0.214 0.786 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 15.410 2.442 16.030 22.370 hybrid contribution 0.129 0.134 -1.465 1.477 sum 15.539 2.576 14.566 21.454 Atomic orbital electron populations 1.22223 0.97065 1.01458 1.00605 1.20778 0.93178 0.94759 0.87065 0.96181 1.21708 0.79880 1.01707 0.97490 1.47770 1.06535 1.22019 1.56729 1.21959 0.99162 0.87096 0.97823 1.21158 0.90951 0.81417 0.77023 1.90644 1.76328 1.32687 1.47546 1.21534 0.89656 1.01015 1.04401 1.21099 0.92319 0.97812 1.02128 1.22955 0.92694 0.87282 0.98489 1.86069 1.17183 1.45119 1.75843 1.19308 0.82679 0.95253 0.96310 1.21394 0.93875 1.00380 1.04558 1.21200 0.94831 0.97974 0.99203 1.17845 0.76907 0.98211 1.05331 1.91467 1.29581 1.96711 1.95140 1.21168 0.93146 0.98903 0.99814 1.20525 0.93634 0.98488 1.02705 1.42521 1.78417 1.10274 1.05423 1.19376 1.35047 0.93604 0.88687 0.92428 1.25251 1.03094 0.96836 1.00333 1.69722 1.52414 1.09426 1.29256 0.85442 0.77561 0.77510 0.80585 1.21182 1.21809 1.21276 0.91556 0.94676 0.92615 0.89034 0.89815 0.89890 0.92034 0.90437 0.85272 0.87663 0.92667 0.91018 0.89141 0.90497 0.82424 0.82699 0.82244 0.83199 0.78563 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 9.49 71.98 0.68 -4.72 16 2 C 0.15 6.05 3.20 44.99 0.14 6.20 16 3 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 4 C 0.12 3.74 5.05 86.38 0.44 4.18 16 5 N -0.60 -18.53 2.73 -846.76 -2.31 -20.84 16 6 C 0.08 2.18 9.86 127.77 1.26 3.44 16 7 C 0.50 15.88 7.67 87.65 0.67 16.55 16 8 O -0.59 -23.01 15.56 -3.04 -0.05 -23.05 16 9 C -0.13 -2.70 4.26 29.85 0.13 -2.57 16 10 C -0.10 -2.10 4.87 30.60 0.15 -1.95 16 11 C 0.06 1.00 4.74 71.98 0.34 1.34 16 12 O -0.33 -6.89 10.14 -92.85 -0.94 -7.83 16 13 C 0.11 2.05 6.69 22.50 0.15 2.20 16 14 C -0.18 -2.82 9.04 22.36 0.20 -2.62 16 15 C -0.11 -1.73 10.02 22.30 0.22 -1.50 16 16 C 0.04 0.63 7.30 22.38 0.16 0.79 16 17 F -0.15 -2.85 17.27 44.97 0.78 -2.08 16 18 C -0.11 -1.71 10.02 22.30 0.22 -1.49 16 19 C -0.13 -2.27 9.98 22.36 0.22 -2.04 16 20 N -0.72 -34.18 4.57 -322.94 -1.47 -35.65 16 21 C -0.23 -12.71 9.93 84.03 0.83 -11.88 16 22 H 0.06 3.17 7.83 -2.91 -0.02 3.14 16 23 C -0.06 -3.40 5.50 84.87 0.47 -2.94 16 24 N -0.96 -54.17 13.06 21.65 0.28 -53.89 16 25 Si 0.96 45.19 29.55 68.60 2.03 47.22 16 26 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 32 H 0.09 2.58 8.07 -2.39 -0.02 2.56 16 33 H 0.08 2.65 7.42 -2.39 -0.02 2.63 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 2.06 5.62 -2.39 -0.01 2.05 16 36 H 0.08 1.91 6.44 -2.38 -0.02 1.89 16 37 H 0.13 1.81 8.11 -2.39 -0.02 1.79 16 38 H 0.11 2.17 7.39 -2.39 -0.02 2.15 16 39 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 40 H 0.07 1.69 8.10 -2.39 -0.02 1.68 16 41 H 0.09 1.04 7.65 -2.39 -0.02 1.03 16 42 H 0.08 1.12 7.67 -2.39 -0.02 1.10 16 43 H 0.16 1.73 6.30 -2.91 -0.02 1.71 16 44 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 45 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 46 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 47 H 0.38 18.21 5.33 -92.70 -0.49 17.72 16 48 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 Total: -1.00 -69.20 398.97 5.08 -64.12 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.47 Total: 29.01 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 6.30 Total: 3.00 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -3.50 Total: -110.38 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.99 Total: -30.89 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.20 5.08 -64.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331519136.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.210 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds