Wall clock time and date at job start Tue Mar 31 2020 21:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99513 * 2 1 4 4 C 1.53006 * 109.46855 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47050 * 174.99922 * 4 3 2 6 6 N 1.46500 * 109.46998 * 294.99868 * 4 3 2 7 7 C 1.34779 * 119.99741 * 275.00368 * 6 4 3 8 8 O 1.21279 * 120.00369 * 359.97438 * 7 6 4 9 9 C 1.50708 * 119.99762 * 179.97438 * 7 6 4 10 10 H 1.09004 * 109.46674 * 39.99713 * 9 7 6 11 11 N 1.46897 * 109.47086 * 159.99749 * 9 7 6 12 12 C 1.52990 * 109.47177 * 280.00081 * 9 7 6 13 13 C 1.53008 * 109.47184 * 174.99914 * 12 9 7 14 14 C 1.53001 * 109.47227 * 179.97438 * 13 12 9 15 15 C 1.50694 * 109.46731 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00448 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99620 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99784 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99690 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47573 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47108 * 120.00260 * 19 17 15 22 22 H 1.48507 * 109.47001 * 239.99854 * 19 17 15 23 23 C 1.50697 * 109.47239 * 54.99586 * 4 3 2 24 24 C 1.38241 * 119.97922 * 279.73048 * 23 4 3 25 25 C 1.38196 * 120.02674 * 179.72684 * 24 23 4 26 26 C 1.38454 * 119.97368 * 0.52434 * 25 24 23 27 27 F 1.35097 * 120.02453 * 179.72882 * 26 25 24 28 28 C 1.38465 * 119.95113 * 359.74744 * 26 25 24 29 29 C 1.38200 * 119.97026 * 0.02562 * 28 26 25 30 30 H 1.09001 * 109.47173 * 300.00021 * 1 2 3 31 31 H 1.09007 * 109.47491 * 59.99931 * 1 2 3 32 32 H 1.09003 * 109.47213 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47442 * 59.99944 * 3 2 1 34 34 H 1.09007 * 109.47471 * 299.99799 * 3 2 1 35 35 H 0.96997 * 120.00110 * 94.99637 * 6 4 3 36 36 H 1.00910 * 110.99969 * 296.04843 * 11 9 7 37 37 H 1.00900 * 111.00284 * 59.99521 * 11 9 7 38 38 H 1.09007 * 109.47166 * 294.99850 * 12 9 7 39 39 H 1.08997 * 109.47617 * 54.99936 * 12 9 7 40 40 H 1.08992 * 109.47028 * 300.00027 * 13 12 9 41 41 H 1.09006 * 109.46614 * 59.99692 * 13 12 9 42 42 H 1.09000 * 109.46944 * 300.00368 * 14 13 12 43 43 H 1.09000 * 109.46764 * 59.99951 * 14 13 12 44 44 H 0.96999 * 119.99671 * 180.02562 * 18 17 15 45 45 H 1.08003 * 119.97939 * 359.97438 * 24 23 4 46 46 H 1.08002 * 120.01168 * 180.29323 * 25 24 23 47 47 H 1.07997 * 120.01118 * 179.97438 * 28 26 25 48 48 H 1.07998 * 119.98219 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1766 -0.0902 6 7 3.9766 0.5641 1.2509 7 6 4.1661 1.3224 2.3489 8 8 3.9719 2.5185 2.3008 9 6 4.6195 0.6838 3.6365 10 1 5.3676 -0.0789 3.4201 11 7 5.2039 1.7085 4.5120 12 6 3.4211 0.0389 4.3355 13 6 3.9003 -0.7154 5.5775 14 6 2.7018 -1.3599 6.2769 15 6 3.1740 -2.1032 7.4997 16 1 4.2237 -2.1145 7.7531 17 6 2.2656 -2.7690 8.2953 18 7 0.9874 -2.7557 7.9865 19 14 2.8508 -3.6898 9.8115 20 1 4.3240 -3.5523 9.9364 21 1 2.1962 -3.1233 11.0180 22 1 2.4973 -5.1267 9.6852 23 6 3.9714 0.3328 -1.1647 24 6 3.9019 -1.0450 -1.0767 25 6 4.2962 -1.8270 -2.1457 26 6 4.7711 -1.2304 -3.3013 27 9 5.1619 -1.9940 -4.3449 28 6 4.8456 0.1497 -3.3863 29 6 4.4463 0.9298 -2.3177 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 4.1323 -0.3925 1.2893 36 1 6.0356 2.1045 4.1002 37 1 4.5296 2.4275 4.7273 38 1 2.7130 0.8131 4.6312 39 1 2.9339 -0.6575 3.6530 40 1 4.6083 -1.4895 5.2818 41 1 4.3875 -0.0189 6.2600 42 1 1.9941 -0.5854 6.5726 43 1 2.2143 -2.0562 5.5945 44 1 0.3483 -3.2237 8.5463 45 1 3.5356 -1.5103 -0.1734 46 1 4.2374 -2.9034 -2.0783 47 1 5.2162 0.6161 -4.2871 48 1 4.5047 2.0062 -2.3837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343810180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:31 Heat of formation + Delta-G solvation = -142.515835 kcal Electronic energy + Delta-G solvation = -29149.641553 eV Core-core repulsion = 24924.350518 eV Total energy + Delta-G solvation = -4225.291036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.90635 -41.47743 -40.12044 -38.65782 -37.15687 -36.07131 -35.21460 -33.10608 -32.49837 -32.01323 -29.77507 -29.39904 -27.32857 -26.58224 -24.78688 -24.19478 -23.74942 -21.95406 -21.64296 -21.13507 -18.89031 -18.43532 -18.37390 -17.99574 -17.36599 -17.07472 -16.89827 -16.77907 -16.56983 -16.45744 -16.26375 -15.80385 -15.74984 -15.28945 -15.11771 -14.54049 -14.46545 -14.40937 -14.23075 -14.03284 -13.76078 -13.60969 -13.36654 -13.09265 -12.95019 -12.80935 -12.67560 -12.48307 -12.32664 -12.15948 -12.09548 -11.95397 -11.50730 -11.37049 -11.20709 -10.94041 -10.66555 -10.51353 -10.23739 -10.05631 -9.73199 -9.54019 -8.16200 -6.26222 0.07318 0.28050 1.41746 1.42247 1.48941 1.55845 2.08438 2.44215 2.60451 2.82338 3.17003 3.26261 3.47177 3.54023 3.75389 3.79239 3.95985 4.01087 4.06984 4.19227 4.26243 4.32458 4.33986 4.47197 4.52087 4.54623 4.55675 4.58602 4.71674 4.86118 4.95345 4.95878 4.97075 5.15350 5.16128 5.23713 5.28155 5.30866 5.36632 5.53455 5.62654 5.86382 5.88409 5.95558 6.06352 6.14753 6.32168 6.43001 6.52895 6.91879 7.10895 7.42750 8.95799 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.002327 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.667907 B =12032.046534 C =12478.837245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.394 6.394 3 C 0.053 3.947 4 C 0.194 3.806 5 H 0.112 0.888 6 N -0.707 5.707 7 C 0.491 3.509 8 O -0.577 6.577 9 C 0.087 3.913 10 H 0.121 0.879 11 N -0.818 5.818 12 C -0.092 4.092 13 C -0.084 4.084 14 C 0.022 3.978 15 C -0.537 4.537 16 H 0.059 0.941 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.963 3.037 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.278 1.278 23 C -0.102 4.102 24 C -0.066 4.066 25 C -0.158 4.158 26 C 0.082 3.918 27 F -0.150 7.150 28 C -0.153 4.153 29 C -0.077 4.077 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.412 0.588 36 H 0.350 0.650 37 H 0.346 0.654 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.056 0.944 42 H -0.017 1.017 43 H -0.008 1.008 44 H 0.262 0.738 45 H 0.138 0.862 46 H 0.145 0.855 47 H 0.154 0.846 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.424 7.775 -25.906 27.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.313 6.313 3 C -0.024 4.024 4 C 0.089 3.911 5 H 0.129 0.871 6 N -0.359 5.359 7 C 0.276 3.724 8 O -0.457 6.457 9 C -0.029 4.029 10 H 0.139 0.861 11 N -0.347 5.347 12 C -0.130 4.130 13 C -0.121 4.121 14 C -0.015 4.015 15 C -0.575 4.575 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.576 5.576 19 Si 0.787 3.213 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.203 1.203 23 C -0.103 4.103 24 C -0.084 4.084 25 C -0.176 4.176 26 C 0.063 3.937 27 F -0.129 7.129 28 C -0.172 4.172 29 C -0.096 4.096 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.249 0.751 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.002 0.998 43 H 0.010 0.990 44 H 0.071 0.929 45 H 0.156 0.844 46 H 0.163 0.837 47 H 0.172 0.828 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.364 7.776 -25.383 27.300 hybrid contribution -0.686 -0.255 -0.089 0.738 sum 5.678 7.521 -25.472 27.159 Atomic orbital electron populations 1.22841 0.80138 1.03546 1.00261 1.87840 1.20606 1.27343 1.95481 1.22937 0.93044 0.85454 1.01001 1.19886 0.92226 0.97277 0.81739 0.87059 1.46154 1.67912 1.12302 1.09575 1.22371 0.75943 0.87316 0.86744 1.90656 1.53206 1.16383 1.85441 1.21608 0.98325 0.95872 0.87117 0.86138 1.59031 1.10858 1.19123 1.45697 1.21428 0.95429 0.98729 0.97447 1.21282 0.97463 0.97980 0.95411 1.19047 0.94041 0.94025 0.94365 1.21762 0.94052 1.31458 1.10238 0.92228 1.25983 0.95001 0.97678 1.01379 1.70107 1.02618 1.44565 1.40312 0.85432 0.78907 0.78129 0.78788 1.18533 1.20598 1.20337 1.19776 1.01030 0.94024 0.95469 1.20886 0.96093 0.92898 0.98505 1.21301 1.01835 1.01913 0.92575 1.18023 1.00859 0.89687 0.85177 1.91481 1.88845 1.75963 1.56575 1.21318 1.03167 0.91324 1.01396 1.21089 0.95943 1.01344 0.91192 0.94688 0.92780 0.88834 0.94097 0.90618 0.75061 0.83669 0.84049 0.93617 0.91153 0.92673 0.92514 0.99817 0.99011 0.92924 0.84437 0.83724 0.82837 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.39 -7.86 9.11 -148.98 -1.36 -9.22 16 3 C 0.05 0.98 5.73 71.98 0.41 1.39 16 4 C 0.19 3.29 2.61 44.25 0.12 3.40 16 5 H 0.11 1.89 7.44 -2.39 -0.02 1.87 16 6 N -0.71 -13.49 4.97 -446.08 -2.22 -15.71 16 7 C 0.49 11.86 7.03 87.66 0.62 12.48 16 8 O -0.58 -17.02 15.91 -3.03 -0.05 -17.07 16 9 C 0.09 2.16 3.15 44.17 0.14 2.29 16 10 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 11 N -0.82 -20.77 8.44 -171.81 -1.45 -22.22 16 12 C -0.09 -2.95 4.84 30.59 0.15 -2.80 16 13 C -0.08 -3.36 5.04 30.60 0.15 -3.21 16 14 C 0.02 1.18 4.97 29.85 0.15 1.33 16 15 C -0.54 -30.89 9.11 25.60 0.23 -30.65 16 16 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 17 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 18 N -0.94 -57.54 13.29 21.45 0.28 -57.25 16 19 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 C -0.10 -1.52 4.83 -19.86 -0.10 -1.62 16 24 C -0.07 -1.03 8.06 22.26 0.18 -0.85 16 25 C -0.16 -2.50 10.03 22.31 0.22 -2.28 16 26 C 0.08 1.36 7.30 22.38 0.16 1.52 16 27 F -0.15 -2.83 17.27 44.97 0.78 -2.05 16 28 C -0.15 -2.02 10.03 22.31 0.22 -1.79 16 29 C -0.08 -0.94 9.67 22.26 0.22 -0.73 16 30 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.09 8.14 -2.38 -0.02 1.08 16 35 H 0.41 6.81 6.85 -92.71 -0.64 6.18 16 36 H 0.35 7.43 9.06 -89.69 -0.81 6.62 16 37 H 0.35 9.37 8.58 -89.69 -0.77 8.60 16 38 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.06 2.35 7.75 -2.38 -0.02 2.33 16 42 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 43 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.14 2.10 6.67 -2.91 -0.02 2.08 16 46 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 48 H 0.16 1.14 8.04 -2.91 -0.02 1.12 16 Total: -1.00 -71.04 404.82 1.37 -69.67 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -1.23 Total: 26.61 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.59 Total: -19.50 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -3.38 Total: -95.18 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -1.40 Total: -26.29 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -71.04 1.37 -69.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343810180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.850 kcal (2) G-P(sol) polarization free energy of solvation -71.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds