Wall clock time and date at job start Tue Mar 31 2020 21:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00178 * 2 1 4 4 H 1.08999 * 109.46923 * 30.00840 * 3 2 1 5 5 C 1.53006 * 109.46760 * 150.00225 * 3 2 1 6 6 N 1.46497 * 109.47044 * 300.00496 * 5 3 2 7 7 C 1.34781 * 119.99716 * 180.02562 * 6 5 3 8 8 O 1.21286 * 119.99983 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00160 * 179.97438 * 7 6 5 10 10 H 1.09002 * 109.46753 * 39.99710 * 9 7 6 11 11 N 1.46898 * 109.47192 * 159.99754 * 9 7 6 12 12 C 1.52992 * 109.47482 * 279.99980 * 9 7 6 13 13 C 1.52997 * 109.47482 * 174.99860 * 12 9 7 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 9 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48494 * 109.47178 * 209.99936 * 19 17 15 22 22 H 1.48500 * 109.47075 * 330.00183 * 19 17 15 23 23 C 1.50691 * 109.47440 * 270.00716 * 3 2 1 24 24 C 1.38253 * 119.97390 * 324.72194 * 23 3 2 25 25 C 1.38198 * 120.02409 * 179.77389 * 24 23 3 26 26 C 1.38460 * 119.97379 * 0.50325 * 25 24 23 27 27 F 1.35100 * 120.02274 * 179.77510 * 26 25 24 28 28 C 1.38462 * 119.94685 * 359.75031 * 26 25 24 29 29 C 1.38192 * 119.97657 * 359.97438 * 28 26 25 30 30 H 1.09009 * 109.46642 * 299.99422 * 1 2 3 31 31 H 1.08993 * 109.47152 * 59.98938 * 1 2 3 32 32 H 1.09002 * 109.47183 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46729 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.46900 * 60.00601 * 5 3 2 35 35 H 0.96994 * 120.00502 * 359.97438 * 6 5 3 36 36 H 1.00906 * 111.00043 * 296.04677 * 11 9 7 37 37 H 1.00899 * 111.00057 * 59.99855 * 11 9 7 38 38 H 1.09002 * 109.47103 * 54.99613 * 12 9 7 39 39 H 1.08998 * 109.46862 * 295.00425 * 12 9 7 40 40 H 1.09002 * 109.47153 * 59.99783 * 13 12 9 41 41 H 1.09001 * 109.46832 * 299.99974 * 13 12 9 42 42 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 43 43 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 44 44 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 45 45 H 1.07996 * 119.98235 * 0.02562 * 24 23 3 46 46 H 1.07999 * 120.01205 * 180.25967 * 25 24 23 47 47 H 1.08001 * 120.00618 * 179.97438 * 28 26 25 48 48 H 1.08006 * 119.98304 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5140 5 6 3.3590 1.2631 0.7212 6 7 3.1604 0.8168 2.1024 7 6 4.2163 0.7035 2.9324 8 8 5.3309 0.9705 2.5356 9 6 4.0120 0.2450 4.3533 10 1 3.2714 -0.5545 4.3741 11 7 5.2839 -0.2515 4.8953 12 6 3.5194 1.4186 5.2022 13 6 3.1932 0.9259 6.6134 14 6 2.7000 2.0996 7.4620 15 6 2.3793 1.6143 8.8523 16 1 2.5134 0.5730 9.1051 17 6 1.9146 2.5000 9.8015 18 7 1.7518 3.7682 9.4938 19 14 1.5164 1.8984 11.5245 20 1 2.7271 2.0043 12.3779 21 1 0.4302 2.7309 12.1008 22 1 1.0754 0.4816 11.4646 23 6 2.2145 1.7645 -1.4207 24 6 2.5650 0.8515 -2.3979 25 6 2.7479 1.2705 -3.7021 26 6 2.5903 2.6070 -4.0278 27 9 2.7734 3.0184 -5.3015 28 6 2.2444 3.5213 -3.0472 29 6 2.0564 3.0990 -1.7449 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 3.8022 2.2589 0.7216 34 1 4.0242 0.5692 0.2073 35 1 2.2690 0.6036 2.4198 36 1 5.5978 -1.0674 4.3914 37 1 5.9875 0.4717 4.8867 38 1 2.6235 1.8436 4.7495 39 1 4.2968 2.1809 5.2540 40 1 4.0891 0.5010 7.0660 41 1 2.4158 0.1637 6.5614 42 1 3.4771 2.8622 7.5141 43 1 1.8041 2.5242 7.0093 44 1 1.4253 4.3913 10.1616 45 1 2.6919 -0.1902 -2.1428 46 1 3.0176 0.5564 -4.4661 47 1 2.1216 4.5640 -3.3001 48 1 1.7862 3.8120 -0.9799 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349821978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:01 Heat of formation + Delta-G solvation = -123.679612 kcal Electronic energy + Delta-G solvation = -28306.178209 eV Core-core repulsion = 24081.703974 eV Total energy + Delta-G solvation = -4224.474236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.32455 -40.43166 -39.68562 -38.02704 -35.78287 -34.91491 -33.32702 -32.27049 -31.61776 -31.33898 -29.01653 -27.79224 -26.74319 -25.14601 -23.75723 -23.47903 -22.20866 -21.57317 -20.17335 -19.99508 -18.18398 -17.51303 -17.32142 -17.08415 -16.46527 -16.19381 -16.05518 -16.00303 -15.59616 -15.26272 -15.00991 -14.88736 -14.43712 -14.20176 -14.06758 -13.98672 -13.83954 -13.59507 -13.13338 -12.93091 -12.91088 -12.37554 -12.35089 -12.02236 -11.76766 -11.71964 -11.47071 -11.33130 -11.13582 -10.74929 -10.61688 -10.41769 -10.31122 -10.18870 -9.60477 -9.59675 -9.25818 -9.20546 -9.12329 -9.03598 -8.54465 -8.29612 -5.95479 -3.96940 0.57819 0.75069 2.58634 2.93332 3.14292 3.18830 3.34993 3.40965 3.44587 3.78926 4.18471 4.23882 4.41092 4.49199 4.50653 4.55398 4.63164 4.79723 4.88292 4.92613 4.97068 4.99835 5.18126 5.25630 5.33661 5.40285 5.40407 5.42797 5.46325 5.52250 5.63916 5.74633 5.91296 5.93841 6.12889 6.23501 6.38249 6.44822 6.64013 6.82894 7.01885 7.11121 7.25078 7.39586 7.53888 7.74991 7.90524 8.06242 8.12790 8.49749 9.10782 9.66785 11.15926 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.001827 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.466754 B =15319.405443 C =15785.802552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.373 6.373 3 C 0.121 3.879 4 H 0.082 0.918 5 C 0.128 3.872 6 N -0.724 5.724 7 C 0.483 3.517 8 O -0.551 6.551 9 C 0.079 3.921 10 H 0.101 0.899 11 N -0.811 5.811 12 C -0.103 4.103 13 C -0.100 4.100 14 C 0.019 3.981 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.126 4.126 24 C -0.061 4.061 25 C -0.157 4.157 26 C 0.102 3.898 27 F -0.140 7.140 28 C -0.155 4.155 29 C -0.077 4.077 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.404 0.596 36 H 0.338 0.662 37 H 0.350 0.650 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.014 0.986 43 H 0.012 0.988 44 H 0.259 0.741 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 -5.397 -28.433 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.292 6.292 3 C 0.062 3.938 4 H 0.100 0.900 5 C 0.003 3.997 6 N -0.377 5.377 7 C 0.269 3.731 8 O -0.428 6.428 9 C -0.037 4.037 10 H 0.118 0.882 11 N -0.340 5.340 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.018 4.018 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.127 4.127 24 C -0.079 4.079 25 C -0.175 4.175 26 C 0.082 3.918 27 F -0.118 7.118 28 C -0.174 4.174 29 C -0.096 4.096 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.239 0.761 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.157 0.843 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.486 -5.313 -27.997 28.536 hybrid contribution -0.528 0.297 -0.320 0.686 sum -2.014 -5.016 -28.318 28.829 Atomic orbital electron populations 1.22889 0.80355 1.03269 1.00437 1.87970 1.20236 1.26219 1.94770 1.21184 0.95273 0.85921 0.91405 0.90010 1.21397 0.94882 1.01345 0.82056 1.46001 1.11058 1.69200 1.11452 1.22565 0.84390 0.76702 0.89465 1.90676 1.24206 1.50227 1.77724 1.21756 0.94904 0.99814 0.87259 0.88162 1.59045 1.05611 1.11109 1.58198 1.21646 1.00263 0.94892 0.97333 1.21540 1.00560 0.99730 0.91957 1.19122 0.95961 0.92836 0.93865 1.21288 1.43061 0.94928 0.96152 0.92644 1.25035 0.95878 0.94935 0.98774 1.69965 1.46870 1.02618 1.34297 0.86614 0.77987 0.78696 0.84817 1.20701 1.21351 1.19893 1.20272 1.02421 0.93919 0.96059 1.20898 0.95426 1.00492 0.91099 1.21202 1.03898 0.94319 0.98130 1.17808 1.01462 0.93327 0.79155 1.91512 1.92776 1.91014 1.36546 1.21139 1.03292 1.00130 0.92799 1.20932 0.97637 0.95179 0.95810 0.93361 0.93874 0.89182 0.89976 0.90646 0.76084 0.85002 0.83590 0.91998 0.91935 0.91808 0.93677 0.96791 0.96997 0.93130 0.84278 0.84557 0.84459 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.81 101.05 1.09 1.24 16 2 O -0.37 -2.84 9.25 -35.23 -0.33 -3.17 16 3 C 0.12 0.86 2.40 -27.88 -0.07 0.79 16 4 H 0.08 0.49 7.70 -51.93 -0.40 0.09 16 5 C 0.13 1.19 5.35 -4.04 -0.02 1.16 16 6 N -0.72 -7.45 5.45 -60.29 -0.33 -7.78 16 7 C 0.48 6.42 7.07 -10.98 -0.08 6.34 16 8 O -0.55 -9.03 16.25 5.55 0.09 -8.94 16 9 C 0.08 1.05 3.15 -68.87 -0.22 0.83 16 10 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 11 N -0.81 -11.06 8.44 -5.66 -0.05 -11.10 16 12 C -0.10 -1.66 4.84 -26.74 -0.13 -1.79 16 13 C -0.10 -2.01 5.04 -26.73 -0.13 -2.15 16 14 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 15 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 19 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.13 -0.90 4.96 -104.62 -0.52 -1.42 16 24 C -0.06 -0.44 9.35 -39.59 -0.37 -0.81 16 25 C -0.16 -1.14 10.03 -39.51 -0.40 -1.54 16 26 C 0.10 0.83 7.30 -39.42 -0.29 0.54 16 27 F -0.14 -1.27 17.27 2.25 0.04 -1.23 16 28 C -0.15 -1.09 10.03 -39.52 -0.40 -1.49 16 29 C -0.08 -0.51 9.68 -39.60 -0.38 -0.90 16 30 H 0.05 0.24 8.09 -51.92 -0.42 -0.18 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.40 3.47 8.35 -40.82 -0.34 3.13 16 36 H 0.34 4.02 9.06 -39.29 -0.36 3.66 16 37 H 0.35 4.97 8.58 -39.29 -0.34 4.63 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.33 7.75 -51.93 -0.40 0.93 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.14 0.94 7.63 -52.49 -0.40 0.54 16 46 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 47 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 LS Contribution 409.14 15.07 6.17 6.17 Total: -1.00 -33.55 409.14 -8.84 -42.40 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.69 Total: 5.61 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -2.46 Total: -12.35 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.36 Total: -45.24 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.24 Total: -12.11 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.55 -8.84 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349821978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.282 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds