Wall clock time and date at job start Tue Mar 31 2020 21:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00178 * 2 1 4 4 H 1.08999 * 109.46923 * 30.00840 * 3 2 1 5 5 C 1.53006 * 109.46760 * 150.00225 * 3 2 1 6 6 N 1.46497 * 109.47044 * 300.00496 * 5 3 2 7 7 C 1.34781 * 119.99716 * 180.02562 * 6 5 3 8 8 O 1.21286 * 119.99983 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00160 * 179.97438 * 7 6 5 10 10 H 1.09002 * 109.46753 * 39.99710 * 9 7 6 11 11 N 1.46898 * 109.47192 * 159.99754 * 9 7 6 12 12 C 1.52992 * 109.47482 * 279.99980 * 9 7 6 13 13 C 1.52997 * 109.47482 * 174.99860 * 12 9 7 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 9 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48494 * 109.47178 * 209.99936 * 19 17 15 22 22 H 1.48500 * 109.47075 * 330.00183 * 19 17 15 23 23 C 1.50691 * 109.47440 * 270.00716 * 3 2 1 24 24 C 1.38253 * 119.97390 * 324.72194 * 23 3 2 25 25 C 1.38198 * 120.02409 * 179.77389 * 24 23 3 26 26 C 1.38460 * 119.97379 * 0.50325 * 25 24 23 27 27 F 1.35100 * 120.02274 * 179.77510 * 26 25 24 28 28 C 1.38462 * 119.94685 * 359.75031 * 26 25 24 29 29 C 1.38192 * 119.97657 * 359.97438 * 28 26 25 30 30 H 1.09009 * 109.46642 * 299.99422 * 1 2 3 31 31 H 1.08993 * 109.47152 * 59.98938 * 1 2 3 32 32 H 1.09002 * 109.47183 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46729 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.46900 * 60.00601 * 5 3 2 35 35 H 0.96994 * 120.00502 * 359.97438 * 6 5 3 36 36 H 1.00906 * 111.00043 * 296.04677 * 11 9 7 37 37 H 1.00899 * 111.00057 * 59.99855 * 11 9 7 38 38 H 1.09002 * 109.47103 * 54.99613 * 12 9 7 39 39 H 1.08998 * 109.46862 * 295.00425 * 12 9 7 40 40 H 1.09002 * 109.47153 * 59.99783 * 13 12 9 41 41 H 1.09001 * 109.46832 * 299.99974 * 13 12 9 42 42 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 43 43 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 44 44 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 45 45 H 1.07996 * 119.98235 * 0.02562 * 24 23 3 46 46 H 1.07999 * 120.01205 * 180.25967 * 25 24 23 47 47 H 1.08001 * 120.00618 * 179.97438 * 28 26 25 48 48 H 1.08006 * 119.98304 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5140 5 6 3.3590 1.2631 0.7212 6 7 3.1604 0.8168 2.1024 7 6 4.2163 0.7035 2.9324 8 8 5.3309 0.9705 2.5356 9 6 4.0120 0.2450 4.3533 10 1 3.2714 -0.5545 4.3741 11 7 5.2839 -0.2515 4.8953 12 6 3.5194 1.4186 5.2022 13 6 3.1932 0.9259 6.6134 14 6 2.7000 2.0996 7.4620 15 6 2.3793 1.6143 8.8523 16 1 2.5134 0.5730 9.1051 17 6 1.9146 2.5000 9.8015 18 7 1.7518 3.7682 9.4938 19 14 1.5164 1.8984 11.5245 20 1 2.7271 2.0043 12.3779 21 1 0.4302 2.7309 12.1008 22 1 1.0754 0.4816 11.4646 23 6 2.2145 1.7645 -1.4207 24 6 2.5650 0.8515 -2.3979 25 6 2.7479 1.2705 -3.7021 26 6 2.5903 2.6070 -4.0278 27 9 2.7734 3.0184 -5.3015 28 6 2.2444 3.5213 -3.0472 29 6 2.0564 3.0990 -1.7449 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 3.8022 2.2589 0.7216 34 1 4.0242 0.5692 0.2073 35 1 2.2690 0.6036 2.4198 36 1 5.5978 -1.0674 4.3914 37 1 5.9875 0.4717 4.8867 38 1 2.6235 1.8436 4.7495 39 1 4.2968 2.1809 5.2540 40 1 4.0891 0.5010 7.0660 41 1 2.4158 0.1637 6.5614 42 1 3.4771 2.8622 7.5141 43 1 1.8041 2.5242 7.0093 44 1 1.4253 4.3913 10.1616 45 1 2.6919 -0.1902 -2.1428 46 1 3.0176 0.5564 -4.4661 47 1 2.1216 4.5640 -3.3001 48 1 1.7862 3.8120 -0.9799 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349821978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:00 Heat of formation + Delta-G solvation = -146.416932 kcal Electronic energy + Delta-G solvation = -28307.164174 eV Core-core repulsion = 24081.703974 eV Total energy + Delta-G solvation = -4225.460200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.96095 -41.23328 -40.49211 -38.59529 -37.13563 -35.82679 -35.20437 -33.09624 -32.90060 -32.14259 -29.93014 -29.15306 -27.39638 -26.47315 -24.80446 -24.04947 -23.54548 -22.19331 -21.72158 -21.14439 -18.76906 -18.42875 -18.34035 -18.04067 -17.81149 -17.25687 -16.71727 -16.66357 -16.60704 -16.45506 -16.02355 -15.81329 -15.58787 -15.41072 -14.82594 -14.60970 -14.55223 -14.49672 -14.24385 -14.19882 -13.91458 -13.60416 -13.47785 -13.07580 -12.90167 -12.81187 -12.54487 -12.46971 -12.34169 -12.25117 -12.14086 -11.86348 -11.51157 -11.35204 -11.20205 -10.93928 -10.79065 -10.49834 -10.18254 -10.10292 -9.75601 -9.60243 -8.15259 -6.25234 0.01025 0.22474 1.42743 1.44053 1.52261 1.55202 2.12183 2.44940 2.52674 2.64567 3.17820 3.22798 3.52575 3.62939 3.72032 3.82379 3.90000 3.95527 4.01782 4.06203 4.20622 4.30367 4.36344 4.52216 4.54856 4.56394 4.60590 4.70974 4.79103 4.90553 4.93560 4.94660 4.97073 5.10963 5.17776 5.20045 5.29983 5.35607 5.37793 5.39523 5.63661 5.84307 5.87899 5.96768 6.07145 6.13715 6.33230 6.44408 6.52995 6.92689 7.15258 7.43601 8.96359 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.001827 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.466754 B =15319.405443 C =15785.802552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.386 6.386 3 C 0.130 3.870 4 H 0.098 0.902 5 C 0.128 3.872 6 N -0.710 5.710 7 C 0.486 3.514 8 O -0.585 6.585 9 C 0.088 3.912 10 H 0.122 0.878 11 N -0.819 5.819 12 C -0.094 4.094 13 C -0.084 4.084 14 C 0.022 3.978 15 C -0.539 4.539 16 H 0.059 0.941 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.962 3.038 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.262 1.262 23 C -0.129 4.129 24 C -0.067 4.067 25 C -0.161 4.161 26 C 0.082 3.918 27 F -0.149 7.149 28 C -0.158 4.158 29 C -0.078 4.078 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.415 0.585 36 H 0.349 0.651 37 H 0.345 0.655 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.056 0.944 42 H -0.016 1.016 43 H -0.006 1.006 44 H 0.262 0.738 45 H 0.142 0.858 46 H 0.148 0.852 47 H 0.151 0.849 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 -6.472 -28.306 29.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.305 6.305 3 C 0.071 3.929 4 H 0.116 0.884 5 C 0.004 3.996 6 N -0.362 5.362 7 C 0.271 3.729 8 O -0.465 6.465 9 C -0.028 4.028 10 H 0.140 0.860 11 N -0.348 5.348 12 C -0.132 4.132 13 C -0.122 4.122 14 C -0.016 4.016 15 C -0.577 4.577 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.787 3.213 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.186 1.186 23 C -0.130 4.130 24 C -0.085 4.085 25 C -0.179 4.179 26 C 0.063 3.937 27 F -0.128 7.128 28 C -0.177 4.177 29 C -0.096 4.096 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.252 0.748 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.002 0.998 43 H 0.012 0.988 44 H 0.071 0.929 45 H 0.160 0.840 46 H 0.165 0.835 47 H 0.169 0.831 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.605 -6.414 -27.892 28.738 hybrid contribution -0.209 0.642 -0.390 0.779 sum -2.814 -5.772 -28.281 29.001 Atomic orbital electron populations 1.23016 0.79258 1.04034 1.00986 1.87951 1.21421 1.26328 1.94826 1.21065 0.94299 0.86291 0.91203 0.88402 1.21423 0.96141 1.00661 0.81383 1.45897 1.10909 1.67792 1.11583 1.22428 0.84384 0.76461 0.89626 1.90668 1.25632 1.51868 1.78312 1.21618 0.95276 0.99133 0.86785 0.86001 1.59051 1.05665 1.11456 1.58613 1.21458 1.00492 0.95600 0.95640 1.21287 1.00142 0.97556 0.93231 1.19057 0.94298 0.94073 0.94126 1.21747 1.43038 0.95271 0.97602 0.92237 1.25977 0.95659 0.95050 1.03362 1.70095 1.47660 1.03901 1.35871 0.85487 0.77894 0.78670 0.79235 1.20114 1.20794 1.18594 1.20353 1.02428 0.94234 0.96018 1.20989 0.95563 1.00784 0.91162 1.21358 1.03644 0.94374 0.98548 1.18061 1.02536 0.94005 0.79087 1.91484 1.92999 1.91136 1.37201 1.21359 1.02771 1.00749 0.92794 1.21162 0.97074 0.95322 0.96072 0.92513 0.93598 0.88405 0.90399 0.91832 0.74791 0.83811 0.84115 0.90641 0.93546 0.92664 0.92569 0.99790 0.98756 0.92928 0.83987 0.83469 0.83117 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.81 113.37 1.23 1.43 16 2 O -0.39 -5.12 9.25 -148.98 -1.38 -6.50 16 3 C 0.13 1.61 2.40 29.85 0.07 1.68 16 4 H 0.10 0.92 7.70 -2.39 -0.02 0.90 16 5 C 0.13 2.21 5.35 86.38 0.46 2.67 16 6 N -0.71 -13.31 5.45 -463.05 -2.52 -15.83 16 7 C 0.49 12.24 7.07 87.66 0.62 12.86 16 8 O -0.58 -18.82 16.25 -3.05 -0.05 -18.87 16 9 C 0.09 2.19 3.15 44.17 0.14 2.33 16 10 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 11 N -0.82 -21.42 8.44 -171.81 -1.45 -22.87 16 12 C -0.09 -2.93 4.84 30.59 0.15 -2.78 16 13 C -0.08 -3.34 5.04 30.59 0.15 -3.18 16 14 C 0.02 1.12 4.97 29.85 0.15 1.27 16 15 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 16 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 17 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 18 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 19 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 23 C -0.13 -1.67 4.96 -19.86 -0.10 -1.77 16 24 C -0.07 -0.91 9.35 22.26 0.21 -0.70 16 25 C -0.16 -2.25 10.03 22.31 0.22 -2.03 16 26 C 0.08 1.29 7.30 22.38 0.16 1.46 16 27 F -0.15 -2.70 17.27 44.97 0.78 -1.92 16 28 C -0.16 -2.06 10.03 22.31 0.22 -1.84 16 29 C -0.08 -0.91 9.68 22.26 0.22 -0.69 16 30 H 0.06 0.42 8.09 -2.38 -0.02 0.40 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.42 6.04 8.35 -92.71 -0.77 5.27 16 36 H 0.35 7.82 9.06 -89.69 -0.81 7.00 16 37 H 0.35 9.68 8.58 -89.69 -0.77 8.91 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 2.27 7.75 -2.39 -0.02 2.25 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 43 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 45 H 0.14 1.80 7.63 -2.91 -0.02 1.78 16 46 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 47 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 48 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -72.18 409.14 0.92 -71.26 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -1.37 Total: 24.50 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 4.60 Total: -19.46 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -3.69 Total: -95.37 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -1.43 Total: -25.37 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -72.18 0.92 -71.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349821978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.157 kcal (2) G-P(sol) polarization free energy of solvation -72.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds