Wall clock time and date at job start Tue Mar 31 2020 21:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99863 * 2 1 4 4 H 1.09002 * 109.47267 * 328.29899 * 3 2 1 5 5 C 1.52994 * 109.47474 * 208.29729 * 3 2 1 6 6 N 1.46505 * 109.46931 * 65.29097 * 5 3 2 7 7 C 1.34776 * 119.99830 * 175.45799 * 6 5 3 8 8 O 1.21284 * 119.99777 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99964 * 180.02562 * 7 6 5 10 10 H 1.09007 * 109.46937 * 40.00032 * 9 7 6 11 11 N 1.46907 * 109.47268 * 159.99876 * 9 7 6 12 12 C 1.52998 * 109.47512 * 279.99719 * 9 7 6 13 13 C 1.52999 * 109.47383 * 175.00015 * 12 9 7 14 14 C 1.53004 * 109.46868 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.46850 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00023 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00107 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99871 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00304 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47326 * 89.99792 * 19 17 15 21 21 H 1.48498 * 109.47040 * 209.99841 * 19 17 15 22 22 H 1.48504 * 109.46694 * 329.99650 * 19 17 15 23 23 C 1.50701 * 109.46702 * 88.29731 * 3 2 1 24 24 C 1.38244 * 119.97228 * 220.00160 * 23 3 2 25 25 C 1.38205 * 120.02513 * 180.02562 * 24 23 3 26 26 C 1.38458 * 119.97387 * 359.97438 * 25 24 23 27 27 F 1.35093 * 120.02875 * 179.97438 * 26 25 24 28 28 C 1.38466 * 119.94734 * 0.25782 * 26 25 24 29 29 C 1.38198 * 119.97480 * 359.46785 * 28 26 25 30 30 H 1.08994 * 109.47140 * 64.67225 * 1 2 3 31 31 H 1.09003 * 109.46522 * 184.67483 * 1 2 3 32 32 H 1.08996 * 109.47079 * 304.66861 * 1 2 3 33 33 H 1.08996 * 109.47619 * 185.29180 * 5 3 2 34 34 H 1.09001 * 109.47038 * 305.29374 * 5 3 2 35 35 H 0.96992 * 120.00204 * 355.45322 * 6 5 3 36 36 H 1.00897 * 110.99749 * 59.99626 * 11 9 7 37 37 H 1.00899 * 111.00225 * 183.95833 * 11 9 7 38 38 H 1.08998 * 109.46757 * 295.00305 * 12 9 7 39 39 H 1.09001 * 109.46459 * 54.99711 * 12 9 7 40 40 H 1.08997 * 109.46891 * 299.99933 * 13 12 9 41 41 H 1.08998 * 109.47095 * 60.00254 * 13 12 9 42 42 H 1.08997 * 109.47038 * 299.99510 * 14 13 12 43 43 H 1.08998 * 109.47328 * 60.00063 * 14 13 12 44 44 H 0.96991 * 120.00234 * 180.02562 * 18 17 15 45 45 H 1.08000 * 119.99355 * 0.02562 * 24 23 3 46 46 H 1.07996 * 120.01604 * 180.02562 * 25 24 23 47 47 H 1.08003 * 120.00997 * 179.74337 * 28 26 25 48 48 H 1.07998 * 119.98708 * 180.29511 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3593 1.9931 -0.5400 5 6 3.3780 1.2549 -0.6838 6 7 3.2045 0.9145 -2.0981 7 6 4.2696 0.9025 -2.9239 8 8 5.3716 1.1740 -2.4961 9 6 4.0912 0.5529 -4.3788 10 1 3.1740 1.0086 -4.7521 11 7 5.2368 1.0573 -5.1478 12 6 4.0042 -0.9670 -4.5312 13 6 3.6988 -1.3168 -5.9891 14 6 3.6112 -2.8367 -6.1412 15 6 3.3109 -3.1812 -7.5773 16 1 3.1939 -2.3948 -8.3082 17 6 3.1857 -4.5004 -7.9581 18 7 3.3288 -5.4581 -7.0682 19 14 2.8143 -4.9275 -9.7382 20 1 4.0880 -5.0919 -10.4840 21 1 2.0419 -6.1947 -9.7924 22 1 2.0177 -3.8356 -10.3534 23 6 2.1760 1.7815 1.4202 24 6 1.9090 3.0990 1.7426 25 6 2.0611 3.5368 3.0447 26 6 2.4805 2.6552 4.0264 27 9 2.6301 3.0821 5.2993 28 6 2.7522 1.3369 3.7013 29 6 2.5939 0.9000 2.3998 30 1 -0.3633 0.4396 -0.9288 31 1 -0.3632 -1.0243 0.0838 32 1 -0.3633 0.5845 0.8452 33 1 3.8618 2.2281 -0.6010 34 1 3.9976 0.4989 -0.2014 35 1 2.3232 0.6977 -2.4402 36 1 6.0997 0.6494 -4.8205 37 1 5.1104 0.8923 -6.1351 38 1 4.9540 -1.4161 -4.2411 39 1 3.2100 -1.3514 -3.8912 40 1 2.7489 -0.8676 -6.2791 41 1 4.4930 -0.9324 -6.6290 42 1 4.5608 -3.2862 -5.8511 43 1 2.8168 -3.2208 -5.5014 44 1 3.2410 -6.3862 -7.3360 45 1 1.5815 3.7865 0.9769 46 1 1.8522 4.5661 3.2964 47 1 3.0834 0.6493 4.4655 48 1 2.8012 -0.1293 2.1470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349821982.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:08 Heat of formation + Delta-G solvation = -122.792907 kcal Electronic energy + Delta-G solvation = -28336.621675 eV Core-core repulsion = 24112.185890 eV Total energy + Delta-G solvation = -4224.435785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.30534 -40.36075 -39.57379 -37.96230 -36.05842 -34.81559 -33.35463 -32.21422 -31.59936 -31.23830 -29.00473 -27.72359 -26.67899 -25.29872 -23.78832 -23.43710 -22.30624 -21.52386 -20.25982 -20.04390 -18.15458 -17.44274 -17.43975 -17.02789 -16.33326 -16.22077 -16.04007 -15.95017 -15.26544 -15.06469 -14.89351 -14.74679 -14.49964 -14.38171 -14.09096 -13.98778 -13.68459 -13.60365 -13.31235 -12.89056 -12.83641 -12.45050 -12.31038 -12.01841 -11.97608 -11.82529 -11.65921 -11.28598 -11.21229 -10.82316 -10.73098 -10.57642 -10.23012 -9.82387 -9.75986 -9.57173 -9.39154 -9.17909 -9.14167 -9.06618 -8.47551 -8.38165 -6.03470 -4.06496 0.60310 0.77568 2.73808 2.95493 3.14031 3.28209 3.29177 3.35665 3.38440 3.81144 4.20440 4.26117 4.42403 4.43140 4.54670 4.58326 4.81463 4.85307 4.86763 4.95287 5.02480 5.04948 5.21834 5.30564 5.32396 5.34310 5.41476 5.43027 5.49256 5.59330 5.65818 5.77724 5.78017 5.95098 5.97914 6.26463 6.31317 6.40943 6.57713 6.71468 6.74130 7.02056 7.16477 7.48788 7.61027 7.62548 7.75450 7.95768 8.27520 8.37556 9.00726 9.57950 11.07691 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.001845 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.748897 B =15173.244319 C =15995.318679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.121 3.879 4 H 0.079 0.921 5 C 0.130 3.870 6 N -0.730 5.730 7 C 0.525 3.475 8 O -0.535 6.535 9 C 0.076 3.924 10 H 0.098 0.902 11 N -0.831 5.831 12 C -0.147 4.147 13 C -0.108 4.108 14 C 0.022 3.978 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.126 4.126 24 C -0.078 4.078 25 C -0.156 4.156 26 C 0.102 3.898 27 F -0.140 7.140 28 C -0.156 4.156 29 C -0.059 4.059 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.403 0.597 36 H 0.349 0.651 37 H 0.351 0.649 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.261 0.739 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 17.651 20.760 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.290 6.290 3 C 0.063 3.937 4 H 0.097 0.903 5 C 0.006 3.994 6 N -0.383 5.383 7 C 0.312 3.688 8 O -0.410 6.410 9 C -0.039 4.039 10 H 0.116 0.884 11 N -0.363 5.363 12 C -0.186 4.186 13 C -0.146 4.146 14 C -0.015 4.015 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.127 4.127 24 C -0.096 4.096 25 C -0.175 4.175 26 C 0.083 3.917 27 F -0.119 7.119 28 C -0.175 4.175 29 C -0.077 4.077 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.237 0.763 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.152 0.848 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.759 18.232 21.421 28.713 hybrid contribution -0.765 -1.220 -1.001 1.754 sum -6.524 17.012 20.420 27.367 Atomic orbital electron populations 1.22867 0.80445 1.03355 1.00184 1.88025 1.20172 1.26010 1.94748 1.21172 0.95227 0.85951 0.91392 0.90272 1.21355 0.94649 1.02267 0.81105 1.45855 1.11366 1.72065 1.09016 1.20729 0.83993 0.75819 0.88283 1.90665 1.25061 1.47779 1.77525 1.21423 0.96570 0.95663 0.90228 0.88367 1.58694 1.04142 1.65560 1.07890 1.22404 1.02711 0.93016 1.00511 1.21649 0.99945 1.00997 0.92023 1.19081 0.97188 0.88449 0.96818 1.21246 1.48376 0.91872 0.94547 0.92693 1.25038 0.95438 0.96634 0.97406 1.69963 1.50135 0.99711 1.33584 0.86597 0.78376 0.77844 0.85197 1.20653 1.21225 1.19881 1.20284 1.02094 0.94189 0.96124 1.20911 0.97890 0.95070 0.95747 1.21119 1.03312 1.00267 0.92806 1.17807 1.01324 0.93463 0.79152 1.91509 1.93315 1.90409 1.36634 1.21222 1.03515 0.94496 0.98218 1.20936 0.95242 1.00454 0.91112 0.93564 0.89108 0.93933 0.89783 0.90565 0.76275 0.83715 0.83367 0.91765 0.91466 0.93085 0.93360 0.96703 0.96593 0.92978 0.84804 0.84554 0.84489 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.79 101.05 1.09 1.27 16 2 O -0.37 -3.18 9.59 -35.23 -0.34 -3.52 16 3 C 0.12 0.89 2.34 -27.89 -0.07 0.83 16 4 H 0.08 0.45 7.71 -51.93 -0.40 0.05 16 5 C 0.13 1.26 5.32 -4.04 -0.02 1.24 16 6 N -0.73 -7.85 5.51 -60.30 -0.33 -8.18 16 7 C 0.53 7.42 7.08 -10.99 -0.08 7.34 16 8 O -0.53 -9.38 16.25 5.55 0.09 -9.29 16 9 C 0.08 1.04 3.21 -68.86 -0.22 0.82 16 10 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 11 N -0.83 -11.59 8.94 -5.65 -0.05 -11.64 16 12 C -0.15 -2.33 4.84 -26.73 -0.13 -2.45 16 13 C -0.11 -2.05 4.92 -26.73 -0.13 -2.18 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.13 -0.92 4.84 -104.62 -0.51 -1.43 16 24 C -0.08 -0.50 9.67 -39.59 -0.38 -0.88 16 25 C -0.16 -1.08 10.03 -39.51 -0.40 -1.47 16 26 C 0.10 0.83 7.30 -39.42 -0.29 0.55 16 27 F -0.14 -1.28 17.27 2.25 0.04 -1.24 16 28 C -0.16 -1.19 10.03 -39.51 -0.40 -1.58 16 29 C -0.06 -0.46 9.35 -39.59 -0.37 -0.83 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.24 8.07 -51.93 -0.42 -0.18 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.40 3.57 8.45 -40.82 -0.34 3.22 16 36 H 0.35 5.09 8.58 -39.29 -0.34 4.75 16 37 H 0.35 4.59 7.55 -39.29 -0.30 4.29 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.88 6.87 -51.93 -0.36 0.53 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.13 0.57 8.04 -52.49 -0.42 0.15 16 46 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 47 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 48 H 0.14 1.05 7.77 -52.49 -0.41 0.64 16 LS Contribution 407.57 15.07 6.14 6.14 Total: -1.00 -33.36 407.57 -8.78 -42.14 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.60 Total: 6.87 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -2.45 Total: -11.69 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.35 Total: -45.77 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.25 Total: -12.81 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.36 -8.78 -42.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349821982.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.655 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds