Wall clock time and date at job start Tue Mar 31 2020 21:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99863 * 2 1 4 4 H 1.09002 * 109.47267 * 328.29899 * 3 2 1 5 5 C 1.52994 * 109.47474 * 208.29729 * 3 2 1 6 6 N 1.46505 * 109.46931 * 65.29097 * 5 3 2 7 7 C 1.34776 * 119.99830 * 175.45799 * 6 5 3 8 8 O 1.21284 * 119.99777 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99964 * 180.02562 * 7 6 5 10 10 H 1.09007 * 109.46937 * 40.00032 * 9 7 6 11 11 N 1.46907 * 109.47268 * 159.99876 * 9 7 6 12 12 C 1.52998 * 109.47512 * 279.99719 * 9 7 6 13 13 C 1.52999 * 109.47383 * 175.00015 * 12 9 7 14 14 C 1.53004 * 109.46868 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.46850 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00023 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00107 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99871 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00304 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47326 * 89.99792 * 19 17 15 21 21 H 1.48498 * 109.47040 * 209.99841 * 19 17 15 22 22 H 1.48504 * 109.46694 * 329.99650 * 19 17 15 23 23 C 1.50701 * 109.46702 * 88.29731 * 3 2 1 24 24 C 1.38244 * 119.97228 * 220.00160 * 23 3 2 25 25 C 1.38205 * 120.02513 * 180.02562 * 24 23 3 26 26 C 1.38458 * 119.97387 * 359.97438 * 25 24 23 27 27 F 1.35093 * 120.02875 * 179.97438 * 26 25 24 28 28 C 1.38466 * 119.94734 * 0.25782 * 26 25 24 29 29 C 1.38198 * 119.97480 * 359.46785 * 28 26 25 30 30 H 1.08994 * 109.47140 * 64.67225 * 1 2 3 31 31 H 1.09003 * 109.46522 * 184.67483 * 1 2 3 32 32 H 1.08996 * 109.47079 * 304.66861 * 1 2 3 33 33 H 1.08996 * 109.47619 * 185.29180 * 5 3 2 34 34 H 1.09001 * 109.47038 * 305.29374 * 5 3 2 35 35 H 0.96992 * 120.00204 * 355.45322 * 6 5 3 36 36 H 1.00897 * 110.99749 * 59.99626 * 11 9 7 37 37 H 1.00899 * 111.00225 * 183.95833 * 11 9 7 38 38 H 1.08998 * 109.46757 * 295.00305 * 12 9 7 39 39 H 1.09001 * 109.46459 * 54.99711 * 12 9 7 40 40 H 1.08997 * 109.46891 * 299.99933 * 13 12 9 41 41 H 1.08998 * 109.47095 * 60.00254 * 13 12 9 42 42 H 1.08997 * 109.47038 * 299.99510 * 14 13 12 43 43 H 1.08998 * 109.47328 * 60.00063 * 14 13 12 44 44 H 0.96991 * 120.00234 * 180.02562 * 18 17 15 45 45 H 1.08000 * 119.99355 * 0.02562 * 24 23 3 46 46 H 1.07996 * 120.01604 * 180.02562 * 25 24 23 47 47 H 1.08003 * 120.00997 * 179.74337 * 28 26 25 48 48 H 1.07998 * 119.98708 * 180.29511 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3593 1.9931 -0.5400 5 6 3.3780 1.2549 -0.6838 6 7 3.2045 0.9145 -2.0981 7 6 4.2696 0.9025 -2.9239 8 8 5.3716 1.1740 -2.4961 9 6 4.0912 0.5529 -4.3788 10 1 3.1740 1.0086 -4.7521 11 7 5.2368 1.0573 -5.1478 12 6 4.0042 -0.9670 -4.5312 13 6 3.6988 -1.3168 -5.9891 14 6 3.6112 -2.8367 -6.1412 15 6 3.3109 -3.1812 -7.5773 16 1 3.1939 -2.3948 -8.3082 17 6 3.1857 -4.5004 -7.9581 18 7 3.3288 -5.4581 -7.0682 19 14 2.8143 -4.9275 -9.7382 20 1 4.0880 -5.0919 -10.4840 21 1 2.0419 -6.1947 -9.7924 22 1 2.0177 -3.8356 -10.3534 23 6 2.1760 1.7815 1.4202 24 6 1.9090 3.0990 1.7426 25 6 2.0611 3.5368 3.0447 26 6 2.4805 2.6552 4.0264 27 9 2.6301 3.0821 5.2993 28 6 2.7522 1.3369 3.7013 29 6 2.5939 0.9000 2.3998 30 1 -0.3633 0.4396 -0.9288 31 1 -0.3632 -1.0243 0.0838 32 1 -0.3633 0.5845 0.8452 33 1 3.8618 2.2281 -0.6010 34 1 3.9976 0.4989 -0.2014 35 1 2.3232 0.6977 -2.4402 36 1 6.0997 0.6494 -4.8205 37 1 5.1104 0.8923 -6.1351 38 1 4.9540 -1.4161 -4.2411 39 1 3.2100 -1.3514 -3.8912 40 1 2.7489 -0.8676 -6.2791 41 1 4.4930 -0.9324 -6.6290 42 1 4.5608 -3.2862 -5.8511 43 1 2.8168 -3.2208 -5.5014 44 1 3.2410 -6.3862 -7.3360 45 1 1.5815 3.7865 0.9769 46 1 1.8522 4.5661 3.2964 47 1 3.0834 0.6493 4.4655 48 1 2.8012 -0.1293 2.1470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349821982.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:07 Heat of formation + Delta-G solvation = -145.616671 kcal Electronic energy + Delta-G solvation = -28337.611388 eV Core-core repulsion = 24112.185890 eV Total energy + Delta-G solvation = -4225.425498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.94837 -41.16388 -40.44354 -38.57139 -37.40098 -35.77087 -35.24690 -32.99485 -32.85148 -32.13076 -29.89509 -29.08089 -27.44332 -26.56328 -24.81735 -24.05546 -23.64695 -22.16356 -21.84152 -21.11066 -18.76049 -18.51608 -18.42925 -18.03042 -17.74880 -16.98778 -16.69712 -16.62273 -16.52682 -16.18353 -16.02577 -15.97362 -15.55926 -15.35655 -14.97387 -14.57758 -14.52803 -14.49193 -14.24084 -14.18374 -13.94882 -13.62201 -13.46726 -13.43103 -12.92794 -12.85291 -12.56141 -12.54008 -12.39627 -12.32974 -12.22033 -11.83891 -11.48047 -11.41629 -11.25701 -10.86241 -10.67437 -10.55069 -10.15453 -10.08217 -9.68476 -9.63463 -8.19247 -6.30503 0.02742 0.24348 1.41212 1.42076 1.53093 1.61826 2.09170 2.41600 2.53055 2.70299 3.14143 3.24449 3.59244 3.70852 3.73734 3.81260 3.90940 3.97374 4.01920 4.04854 4.12585 4.32253 4.38572 4.43694 4.52064 4.56166 4.59903 4.62309 4.78959 4.82224 4.92754 4.95068 4.95704 5.03971 5.12523 5.20971 5.21950 5.25943 5.38956 5.42290 5.53577 5.74889 5.86101 5.86666 6.07484 6.18019 6.24903 6.50455 6.54317 6.87767 7.24141 7.39218 8.92367 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.001845 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.748897 B =15173.244319 C =15995.318679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.130 3.870 4 H 0.105 0.895 5 C 0.130 3.870 6 N -0.714 5.714 7 C 0.523 3.477 8 O -0.574 6.574 9 C 0.086 3.914 10 H 0.125 0.875 11 N -0.832 5.832 12 C -0.134 4.134 13 C -0.094 4.094 14 C 0.022 3.978 15 C -0.540 4.540 16 H 0.064 0.936 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.964 3.036 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.260 1.260 23 C -0.130 4.130 24 C -0.074 4.074 25 C -0.156 4.156 26 C 0.082 3.918 27 F -0.150 7.150 28 C -0.163 4.163 29 C -0.070 4.070 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.415 0.585 36 H 0.344 0.656 37 H 0.357 0.643 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.055 0.945 42 H -0.017 1.017 43 H -0.008 1.008 44 H 0.262 0.738 45 H 0.161 0.839 46 H 0.154 0.846 47 H 0.144 0.856 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.048 19.476 19.573 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C 0.072 3.928 4 H 0.123 0.877 5 C 0.006 3.994 6 N -0.366 5.366 7 C 0.310 3.690 8 O -0.452 6.452 9 C -0.030 4.030 10 H 0.143 0.857 11 N -0.364 5.364 12 C -0.174 4.174 13 C -0.132 4.132 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.082 0.918 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.789 3.211 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.184 1.184 23 C -0.131 4.131 24 C -0.092 4.092 25 C -0.175 4.175 26 C 0.063 3.937 27 F -0.128 7.128 28 C -0.182 4.182 29 C -0.088 4.088 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.251 0.749 36 H 0.158 0.842 37 H 0.172 0.828 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.001 0.999 43 H 0.010 0.990 44 H 0.071 0.929 45 H 0.179 0.821 46 H 0.172 0.828 47 H 0.162 0.838 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.364 20.073 20.237 29.439 hybrid contribution -0.288 -1.815 -0.580 1.927 sum -7.651 18.258 19.657 27.898 Atomic orbital electron populations 1.22986 0.79300 1.03697 1.01229 1.88000 1.21488 1.26743 1.94871 1.21097 0.94174 0.86138 0.91388 0.87744 1.21397 0.96081 1.01586 0.80317 1.45752 1.11171 1.70515 1.09209 1.20803 0.84018 0.75574 0.88654 1.90652 1.26627 1.49841 1.78114 1.21379 0.97568 0.93685 0.90322 0.85749 1.58716 1.04053 1.65340 1.08293 1.22225 1.01794 0.94984 0.98440 1.21428 1.01066 0.96422 0.94238 1.19014 0.94492 0.92621 0.95338 1.21735 1.47873 0.92366 0.95867 0.91757 1.26012 0.95255 0.96683 1.02188 1.70104 1.51323 1.00129 1.35992 0.85458 0.78411 0.77818 0.79425 1.20045 1.20990 1.18375 1.20361 1.02141 0.94667 0.95902 1.21192 0.96926 0.94924 0.96122 1.21381 1.02481 1.00937 0.92700 1.18061 1.02391 0.94030 0.79182 1.91481 1.93532 1.90504 1.37319 1.21337 1.03603 0.94721 0.98499 1.20983 0.95823 1.00572 0.91423 0.92180 0.89213 0.93202 0.89682 0.92496 0.74871 0.84246 0.82781 0.93634 0.91104 0.91601 0.92606 0.99861 0.98968 0.92897 0.82106 0.82782 0.83830 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.79 113.37 1.22 1.48 16 2 O -0.39 -6.18 9.59 -148.98 -1.43 -7.61 16 3 C 0.13 1.67 2.34 29.85 0.07 1.74 16 4 H 0.10 0.83 7.71 -2.39 -0.02 0.81 16 5 C 0.13 2.37 5.32 86.38 0.46 2.83 16 6 N -0.71 -14.15 5.51 -463.07 -2.55 -16.70 16 7 C 0.52 14.13 7.08 87.66 0.62 14.76 16 8 O -0.57 -19.95 16.25 -3.04 -0.05 -20.00 16 9 C 0.09 2.17 3.21 44.17 0.14 2.32 16 10 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 11 N -0.83 -22.01 8.94 -171.79 -1.54 -23.55 16 12 C -0.13 -4.16 4.84 30.59 0.15 -4.01 16 13 C -0.09 -3.46 4.92 30.60 0.15 -3.30 16 14 C 0.02 1.14 4.97 29.85 0.15 1.29 16 15 C -0.54 -29.89 9.11 25.60 0.23 -29.66 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 17 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 18 N -0.94 -56.69 13.29 21.45 0.28 -56.40 16 19 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 23 C -0.13 -1.71 4.84 -19.86 -0.10 -1.80 16 24 C -0.07 -0.76 9.67 22.26 0.22 -0.55 16 25 C -0.16 -1.89 10.03 22.31 0.22 -1.67 16 26 C 0.08 1.31 7.30 22.38 0.16 1.47 16 27 F -0.15 -2.72 17.27 44.97 0.78 -1.94 16 28 C -0.16 -2.49 10.03 22.31 0.22 -2.26 16 29 C -0.07 -1.06 9.35 22.26 0.21 -0.85 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.46 8.07 -2.39 -0.02 0.45 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.41 6.29 8.45 -92.71 -0.78 5.51 16 36 H 0.34 9.85 8.58 -89.70 -0.77 9.08 16 37 H 0.36 8.65 7.55 -89.69 -0.68 7.97 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.06 1.97 6.87 -2.39 -0.02 1.95 16 42 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.26 14.97 8.31 -92.72 -0.77 14.20 16 45 H 0.16 0.76 8.04 -2.91 -0.02 0.74 16 46 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 47 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 48 H 0.14 2.11 7.77 -2.91 -0.02 2.09 16 Total: -1.00 -72.77 407.57 0.88 -71.90 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -1.24 Total: 26.73 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 4.59 Total: -17.98 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -3.80 Total: -96.64 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.48 Total: -27.61 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.77 0.88 -71.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349821982.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.721 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds