Wall clock time and date at job start Tue Mar 31 2020 21:15:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.08998 * 109.47089 * 2 1
4 4 C 1.52997 * 109.47283 * 120.00164 * 2 1 3
5 5 O 1.42898 * 109.47319 * 54.99945 * 4 2 1
6 6 C 1.35958 * 117.00089 * 180.02562 * 5 4 2
7 7 C 1.38653 * 120.06208 * 359.97438 * 6 5 4
8 8 C 1.38183 * 119.97128 * 179.97438 * 7 6 5
9 9 C 1.38259 * 120.09181 * 0.02562 * 8 7 6
10 10 C 1.38262 * 120.12767 * 0.02562 * 9 8 7
11 11 C 1.38334 * 120.02958 * 359.69757 * 10 9 8
12 12 F 1.35088 * 120.04849 * 180.28076 * 11 10 9
13 13 N 1.46504 * 109.46612 * 240.00228 * 2 1 3
14 14 C 1.34776 * 120.00303 * 84.99857 * 13 2 1
15 15 O 1.21282 * 119.99597 * 359.97438 * 14 13 2
16 16 C 1.50695 * 120.00006 * 179.97438 * 14 13 2
17 17 H 1.08999 * 109.47593 * 320.00290 * 16 14 13
18 18 N 1.46905 * 109.46996 * 200.00098 * 16 14 13
19 19 C 1.52999 * 109.47117 * 80.00022 * 16 14 13
20 20 C 1.52998 * 109.47536 * 184.99590 * 19 16 14
21 21 C 1.52999 * 109.47536 * 179.97438 * 20 19 16
22 22 C 1.50700 * 109.47163 * 180.02562 * 21 20 19
23 23 H 1.08001 * 119.99799 * 0.02562 * 22 21 20
24 24 C 1.37882 * 119.99869 * 180.02562 * 22 21 20
25 25 N 1.31510 * 119.99566 * 179.97438 * 24 22 21
26 26 Si 1.86803 * 119.99920 * 359.97438 * 24 22 21
27 27 H 1.48502 * 109.46661 * 90.00041 * 26 24 22
28 28 H 1.48497 * 109.46952 * 209.99914 * 26 24 22
29 29 H 1.48494 * 109.47145 * 330.00293 * 26 24 22
30 30 H 1.09000 * 109.46763 * 299.99708 * 1 2 3
31 31 H 1.08996 * 109.47004 * 59.99701 * 1 2 3
32 32 H 1.08998 * 109.47089 * 179.97438 * 1 2 3
33 33 H 1.09002 * 109.47153 * 294.99638 * 4 2 1
34 34 H 1.09001 * 109.46832 * 174.99829 * 4 2 1
35 35 H 1.08003 * 120.01796 * 359.97438 * 7 6 5
36 36 H 1.07997 * 119.95463 * 179.97438 * 8 7 6
37 37 H 1.07999 * 119.93943 * 179.97438 * 9 8 7
38 38 H 1.08001 * 119.98187 * 179.97438 * 10 9 8
39 39 H 0.97003 * 119.99387 * 264.99986 * 13 2 1
40 40 H 1.00907 * 110.99476 * 176.04641 * 18 16 14
41 41 H 1.00897 * 110.99937 * 300.00151 * 18 16 14
42 42 H 1.09001 * 109.47534 * 305.00168 * 19 16 14
43 43 H 1.09007 * 109.47138 * 64.99859 * 19 16 14
44 44 H 1.09001 * 109.47181 * 300.00794 * 20 19 16
45 45 H 1.09007 * 109.46687 * 59.99993 * 20 19 16
46 46 H 1.08998 * 109.47093 * 300.00318 * 21 20 19
47 47 H 1.09000 * 109.46771 * 60.00392 * 21 20 19
48 48 H 0.97003 * 119.99566 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 1.2492
5 8 1.4704 -2.0304 1.3094
6 6 1.8229 -2.8090 2.3667
7 6 2.6990 -2.3233 3.3254
8 6 3.0557 -3.1160 4.3995
9 6 2.5406 -4.3934 4.5196
10 6 1.6675 -4.8821 3.5654
11 6 1.3024 -4.0908 2.4910
12 9 0.4450 -4.5659 1.5615
13 7 2.0183 -0.6906 -1.1963
14 6 2.1469 -0.0183 -2.3573
15 8 1.8581 1.1584 -2.4117
16 6 2.6497 -0.7286 -3.5876
17 1 3.4561 -1.4078 -3.3110
18 7 3.1507 0.2591 -4.5528
19 6 1.5064 -1.5250 -4.2196
20 6 2.0440 -2.3440 -5.3948
21 6 0.9009 -3.1409 -6.0264
22 6 1.4306 -3.9482 -7.1835
23 1 2.4780 -3.8982 -7.4421
24 6 0.5781 -4.7506 -7.9119
25 7 1.0404 -5.4546 -8.9219
26 14 -1.2333 -4.8375 -7.4640
27 1 -1.9786 -3.7927 -8.2111
28 1 -1.7675 -6.1766 -7.8199
29 1 -1.3939 -4.6123 -6.0050
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3633 -1.0276 -0.0005
33 1 1.7518 -0.1583 2.1369
34 1 3.1264 -0.7995 1.2054
35 1 3.1026 -1.3257 3.2326
36 1 3.7385 -2.7376 5.1458
37 1 2.8213 -5.0110 5.3599
38 1 1.2668 -5.8805 3.6613
39 1 2.2489 -1.6318 -1.1527
40 1 3.5524 -0.1952 -5.3593
41 1 2.4213 0.9008 -4.8250
42 1 1.0761 -2.1957 -3.4759
43 1 0.7390 -0.8380 -4.5766
44 1 2.4743 -1.6733 -6.1385
45 1 2.8115 -3.0310 -5.0378
46 1 0.4711 -3.8117 -5.2825
47 1 0.1332 -2.4543 -6.3833
48 1 0.4405 -6.0188 -9.4346
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001349824211.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:15:49
Heat of formation + Delta-G solvation = -112.207803 kcal
Electronic energy + Delta-G solvation = -28859.230994 eV
Core-core repulsion = 24635.254214 eV
Total energy + Delta-G solvation = -4223.976781 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-49.05384 -40.67533 -39.87376 -38.09444 -36.32120 -35.41951 -33.34270 -31.62096
-31.44156 -31.15926 -30.08744 -28.14745 -27.34393 -25.59861 -23.53080 -22.93658
-22.47042 -21.05965 -20.26672 -20.17173 -18.92302 -17.57346 -17.49806 -17.07309
-16.73315 -16.66304 -16.13377 -15.55474 -15.32185 -15.11131 -14.96463 -14.82480
-14.68875 -14.28547 -14.15626 -13.79240 -13.59084 -13.37945 -13.22359 -12.86152
-12.68652 -12.57049 -12.31381 -12.27120 -12.01058 -11.98212 -11.61993 -11.47394
-11.38909 -11.36624 -11.02339 -10.77566 -10.07922 -9.92711 -9.78117 -9.52983
-9.41878 -9.25573 -9.22090 -8.65142 -8.56720 -8.53038 -6.06103 -4.04360
0.65847 0.79156 2.50208 2.67516 2.97968 3.11741 3.29972 3.37589
3.41525 3.81549 4.09986 4.31231 4.41271 4.44033 4.48659 4.61834
4.73292 4.75900 4.78371 4.79427 4.91979 5.10682 5.14268 5.18007
5.25017 5.28324 5.44725 5.47999 5.57962 5.67861 5.69568 5.71043
5.84772 5.90624 6.05514 6.14356 6.16522 6.31226 6.44124 6.56022
6.81673 6.82377 7.11056 7.24539 7.37447 7.43567 7.56363 7.77162
8.19935 8.51285 8.98380 9.56609 11.07290
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.009747 B = 0.002592 C = 0.002203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2871.900687 B =10797.853292 C =12707.302260
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.150 3.850
3 H 0.107 0.893
4 C 0.049 3.951
5 O -0.301 6.301
6 C 0.099 3.901
7 C -0.184 4.184
8 C -0.091 4.091
9 C -0.130 4.130
10 C -0.117 4.117
11 C 0.071 3.929
12 F -0.129 7.129
13 N -0.728 5.728
14 C 0.527 3.473
15 O -0.535 6.535
16 C 0.076 3.924
17 H 0.100 0.900
18 N -0.830 5.830
19 C -0.150 4.150
20 C -0.101 4.101
21 C -0.013 4.013
22 C -0.521 4.521
23 H 0.071 0.929
24 C 0.066 3.934
25 N -0.903 5.903
26 Si 0.880 3.120
27 H -0.277 1.277
28 H -0.287 1.287
29 H -0.266 1.266
30 H 0.063 0.937
31 H 0.065 0.935
32 H 0.068 0.932
33 H 0.080 0.920
34 H 0.073 0.927
35 H 0.137 0.863
36 H 0.132 0.868
37 H 0.134 0.866
38 H 0.142 0.858
39 H 0.406 0.594
40 H 0.353 0.647
41 H 0.349 0.651
42 H 0.067 0.933
43 H 0.064 0.936
44 H 0.054 0.946
45 H 0.057 0.943
46 H 0.016 0.984
47 H 0.010 0.990
48 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.783 7.511 30.882 32.007
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.045 3.955
3 H 0.125 0.875
4 C -0.026 4.026
5 O -0.214 6.214
6 C 0.053 3.947
7 C -0.202 4.202
8 C -0.109 4.109
9 C -0.148 4.148
10 C -0.136 4.136
11 C 0.051 3.949
12 F -0.108 7.108
13 N -0.382 5.382
14 C 0.314 3.686
15 O -0.410 6.410
16 C -0.039 4.039
17 H 0.118 0.882
18 N -0.362 5.362
19 C -0.190 4.190
20 C -0.138 4.138
21 C -0.051 4.051
22 C -0.559 4.559
23 H 0.090 0.910
24 C -0.135 4.135
25 N -0.542 5.542
26 Si 0.707 3.293
27 H -0.203 1.203
28 H -0.214 1.214
29 H -0.190 1.190
30 H 0.082 0.918
31 H 0.084 0.916
32 H 0.087 0.913
33 H 0.098 0.902
34 H 0.092 0.908
35 H 0.155 0.845
36 H 0.150 0.850
37 H 0.152 0.848
38 H 0.160 0.840
39 H 0.240 0.760
40 H 0.168 0.832
41 H 0.162 0.838
42 H 0.085 0.915
43 H 0.082 0.918
44 H 0.072 0.928
45 H 0.076 0.924
46 H 0.034 0.966
47 H 0.028 0.972
48 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 3.862 8.435 31.069 32.425
hybrid contribution -1.618 -1.070 -0.536 2.013
sum 2.244 7.366 30.533 31.489
Atomic orbital electron populations
1.22133 0.94279 1.03277 1.02569 1.20994 0.95492 0.96637 0.82370
0.87483 1.23266 0.98450 0.81733 0.99164 1.86168 1.67015 1.26274
1.41988 1.19012 0.96189 0.90412 0.89086 1.21193 1.01202 1.01862
0.95992 1.21034 0.98865 0.93844 0.97149 1.20959 0.98189 0.96252
0.99448 1.21093 0.99035 1.00304 0.93143 1.17057 0.95825 0.91264
0.90778 1.91544 1.67399 1.88039 1.63772 1.46052 1.68331 1.14456
1.09370 1.20738 0.76580 0.87083 0.84249 1.90655 1.49478 1.16032
1.84835 1.21413 0.97970 0.93312 0.91240 0.88188 1.58687 1.38556
1.19780 1.19210 1.22445 0.97431 0.99380 0.99741 1.21475 0.99805
0.97733 0.94823 1.19561 0.94147 0.95113 0.96260 1.21137 0.97219
1.25035 1.12550 0.91038 1.25039 0.98706 0.95087 0.94681 1.69915
1.35648 1.28845 1.19807 0.86779 0.85702 0.77344 0.79472 1.20327
1.21351 1.19034 0.91794 0.91622 0.91295 0.90193 0.90833 0.84487
0.85033 0.84821 0.83976 0.75957 0.83208 0.83751 0.91469 0.91767
0.92765 0.92417 0.96612 0.97196 0.92729
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.60 9.29 37.16 0.35 -1.26 16
2 C 0.15 1.36 2.98 -67.93 -0.20 1.16 16
3 H 0.11 1.00 7.58 -51.93 -0.39 0.61 16
4 C 0.05 0.34 4.48 37.16 0.17 0.51 16
5 O -0.30 -2.84 8.85 -19.61 -0.17 -3.01 16
6 C 0.10 0.90 6.69 -39.18 -0.26 0.64 16
7 C -0.18 -1.20 9.04 -39.45 -0.36 -1.56 16
8 C -0.09 -0.50 10.04 -39.59 -0.40 -0.89 16
9 C -0.13 -0.74 10.04 -39.56 -0.40 -1.14 16
10 C -0.12 -0.86 10.02 -39.54 -0.40 -1.26 16
11 C 0.07 0.70 7.31 -39.30 -0.29 0.41 16
12 F -0.13 -1.59 17.11 2.25 0.04 -1.55 16
13 N -0.73 -7.80 5.06 -53.80 -0.27 -8.08 16
14 C 0.53 7.17 7.04 -10.99 -0.08 7.09 16
15 O -0.53 -8.84 15.91 5.56 0.09 -8.75 16
16 C 0.08 1.02 3.21 -68.86 -0.22 0.80 16
17 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16
18 N -0.83 -11.36 8.94 -5.65 -0.05 -11.41 16
19 C -0.15 -2.30 4.84 -26.73 -0.13 -2.43 16
20 C -0.10 -1.87 4.92 -26.73 -0.13 -2.00 16
21 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16
22 C -0.52 -14.84 9.66 -34.44 -0.33 -15.18 16
23 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16
24 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16
25 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16
26 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16
27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
29 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16
30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
32 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16
33 H 0.08 0.39 7.66 -51.93 -0.40 -0.01 16
34 H 0.07 0.42 7.66 -51.93 -0.40 0.03 16
35 H 0.14 0.61 6.30 -52.48 -0.33 0.28 16
36 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16
37 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16
38 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16
39 H 0.41 3.96 8.38 -40.82 -0.34 3.62 16
40 H 0.35 4.58 7.55 -39.29 -0.30 4.29 16
41 H 0.35 4.91 8.58 -39.29 -0.34 4.57 16
42 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16
43 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16
44 H 0.05 0.98 6.87 -51.93 -0.36 0.63 16
45 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16
46 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16
47 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16
48 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16
LS Contribution 399.37 15.07 6.02 6.02
Total: -1.00 -34.37 399.37 -8.54 -42.91
By element:
Atomic # 1 Polarization: 14.87 SS G_CDS: -7.40 Total: 7.46 kcal
Atomic # 6 Polarization: -10.82 SS G_CDS: -2.89 Total: -13.71 kcal
Atomic # 7 Polarization: -47.17 SS G_CDS: 0.45 Total: -46.72 kcal
Atomic # 8 Polarization: -11.68 SS G_CDS: -0.09 Total: -11.76 kcal
Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -34.37 -8.54 -42.91 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001349824211.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.302 kcal
(2) G-P(sol) polarization free energy of solvation -34.366 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.668 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.208 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds