Wall clock time and date at job start Tue Mar 31 2020 22:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00455 * 2 1 4 4 H 1.48500 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46920 * 299.99892 * 3 2 1 6 6 H 1.48497 * 109.47145 * 59.99865 * 3 2 1 7 7 C 1.37880 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00572 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99744 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99896 * 269.99656 * 10 9 7 12 12 C 1.52994 * 109.47253 * 270.00133 * 11 10 9 13 13 N 1.46898 * 109.47282 * 180.02562 * 12 11 10 14 14 C 1.47009 * 111.00018 * 293.63477 * 13 12 11 15 15 C 1.53099 * 109.26038 * 177.60415 * 14 13 12 16 16 O 1.43016 * 109.25616 * 56.85055 * 15 14 13 17 17 C 1.43020 * 113.73879 * 301.32996 * 16 15 14 18 18 C 1.47014 * 111.00099 * 169.99906 * 13 12 11 19 19 C 1.34777 * 119.99832 * 90.00120 * 10 9 7 20 20 O 1.21278 * 119.99854 * 180.02562 * 19 10 9 21 21 C 1.50703 * 120.00161 * 359.97438 * 19 10 9 22 22 C 1.53000 * 109.46912 * 180.02562 * 21 19 10 23 23 C 1.50703 * 109.46912 * 179.97438 * 22 21 19 24 24 N 1.33309 * 126.54982 * 269.68790 * 23 22 21 25 25 N 1.29002 * 107.35464 * 179.83401 * 24 23 22 26 26 N 1.28786 * 108.72526 * 0.43219 * 25 24 23 27 27 H 0.96997 * 125.44735 * 179.72062 * 26 25 24 28 28 N 1.28884 * 109.09854 * 359.72584 * 26 25 24 29 29 H 0.97008 * 119.99205 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47617 * 59.99831 * 9 7 2 31 31 H 1.09000 * 109.47073 * 299.99588 * 9 7 2 32 32 H 1.09000 * 109.47082 * 30.00019 * 11 10 9 33 33 H 1.09004 * 109.46754 * 150.00286 * 11 10 9 34 34 H 1.09001 * 109.47335 * 300.00356 * 12 11 10 35 35 H 1.08999 * 109.47583 * 60.00307 * 12 11 10 36 36 H 1.08995 * 109.51087 * 297.53742 * 14 13 12 37 37 H 1.08999 * 109.50795 * 57.67466 * 14 13 12 38 38 H 1.08994 * 109.50710 * 296.91562 * 15 14 13 39 39 H 1.09004 * 109.54462 * 176.80402 * 15 14 13 40 40 H 1.09002 * 109.50344 * 298.73666 * 17 16 15 41 41 H 1.09002 * 109.54096 * 178.63082 * 17 16 15 42 42 H 1.09001 * 109.50492 * 302.32452 * 18 13 12 43 43 H 1.08993 * 109.50674 * 62.41617 * 18 13 12 44 44 H 1.09002 * 109.47152 * 60.00245 * 21 19 10 45 45 H 1.09001 * 109.46980 * 300.00345 * 21 19 10 46 46 H 1.09001 * 109.47194 * 299.99742 * 22 21 19 47 47 H 1.08992 * 109.47399 * 59.99914 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.6787 -4.1696 -1.2682 12 6 1.7480 -5.3007 -1.7098 13 7 2.2255 -5.8594 -2.9817 14 6 2.1078 -4.8747 -4.0669 15 6 2.6703 -5.4761 -5.3576 16 8 1.9776 -6.6921 -5.6524 17 6 2.0718 -7.6740 -4.6168 18 6 1.5033 -7.0948 -3.3186 19 6 2.6407 -4.1250 1.1678 20 8 3.4291 -5.0466 1.1678 21 6 2.1515 -3.5519 2.4729 22 6 2.7979 -4.3073 3.6358 23 6 2.3092 -3.7338 4.9409 24 7 2.8693 -2.7399 5.6306 25 7 2.1485 -2.5479 6.6830 26 7 1.1727 -3.3883 6.6748 27 1 0.4853 -3.4590 7.3555 28 7 1.2557 -4.1206 5.6174 29 1 -0.4849 0.8402 -0.0004 30 1 0.6245 -2.5571 -0.8896 31 1 0.6239 -2.5567 0.8903 32 1 2.6865 -3.3879 -2.0278 33 1 3.6882 -4.5597 -1.1378 34 1 1.7401 -6.0823 -0.9501 35 1 0.7385 -4.9107 -1.8402 36 1 1.0588 -4.6171 -4.2125 37 1 2.6709 -3.9782 -3.8076 38 1 3.7325 -5.6842 -5.2295 39 1 2.5338 -4.7714 -6.1780 40 1 3.1167 -7.9459 -4.4672 41 1 1.5024 -8.5590 -4.9007 42 1 1.6252 -7.8189 -2.5130 43 1 0.4445 -6.8728 -3.4514 44 1 1.0678 -3.6534 2.5308 45 1 2.4212 -2.4973 2.5304 46 1 2.5286 -5.3620 3.5784 47 1 3.8815 -4.2054 3.5777 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361944551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:46 Heat of formation + Delta-G solvation = 21.979333 kcal Electronic energy + Delta-G solvation = -29575.803627 eV Core-core repulsion = 25409.858350 eV Total energy + Delta-G solvation = -4165.945277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.46818 -41.00409 -40.35740 -37.48814 -36.35271 -35.95470 -34.96218 -34.53218 -32.71058 -32.16573 -31.05572 -29.03752 -27.73620 -26.15882 -25.53239 -25.02281 -24.84890 -23.41679 -22.47262 -21.34526 -20.11754 -19.90436 -18.64977 -18.13709 -17.95084 -17.71285 -17.14101 -16.83812 -16.56054 -16.31297 -16.20199 -15.96554 -15.63738 -15.43638 -15.10466 -14.78270 -14.53398 -14.21799 -14.12883 -13.89199 -13.56543 -13.44757 -13.24341 -13.18077 -13.04065 -12.83150 -12.64930 -12.47114 -12.31506 -12.30369 -12.22648 -12.11756 -11.95120 -11.83894 -11.68963 -11.44319 -11.32980 -10.76908 -10.69605 -10.55265 -9.57219 -9.38766 -8.22420 -6.35905 0.13452 1.00485 1.38811 1.43354 1.51730 1.53022 1.75298 2.15805 2.41249 2.79436 2.92475 3.02457 3.09134 3.30461 3.73706 3.87134 3.94343 4.00631 4.04608 4.13452 4.19705 4.20922 4.33218 4.41436 4.43602 4.48431 4.55296 4.60382 4.69976 4.73112 4.81203 4.83774 4.85085 4.93605 4.95962 5.00034 5.03088 5.10327 5.21215 5.63702 5.67898 5.76607 5.91602 5.93460 6.04370 6.17842 6.55287 6.80461 7.20962 7.28626 7.40119 8.83189 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.008889 B = 0.003256 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.063544 B = 8596.344515 C =11133.182452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.255 3.745 10 N -0.598 5.598 11 C 0.129 3.871 12 C 0.060 3.940 13 N -0.538 5.538 14 C 0.011 3.989 15 C 0.068 3.932 16 O -0.404 6.404 17 C 0.066 3.934 18 C 0.017 3.983 19 C 0.521 3.479 20 O -0.582 6.582 21 C -0.121 4.121 22 C 0.003 3.997 23 C 0.175 3.825 24 N -0.303 5.303 25 N -0.063 5.063 26 N -0.204 5.204 27 H 0.492 0.508 28 N -0.300 5.300 29 H 0.267 0.733 30 H 0.019 0.981 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.033 0.967 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.035 0.965 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 -11.813 1.322 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.134 3.866 10 N -0.328 5.328 11 C 0.006 3.994 12 C -0.069 4.069 13 N -0.264 5.264 14 C -0.117 4.117 15 C -0.009 4.009 16 O -0.323 6.323 17 C -0.011 4.011 18 C -0.111 4.111 19 C 0.310 3.690 20 O -0.464 6.464 21 C -0.162 4.162 22 C -0.038 4.038 23 C -0.107 4.107 24 N -0.175 5.175 25 N -0.058 5.058 26 N -0.055 5.055 27 H 0.351 0.649 28 N -0.153 5.153 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.132 0.868 40 H 0.083 0.917 41 H 0.137 0.863 42 H 0.114 0.886 43 H 0.053 0.947 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.128 0.872 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.075 -11.908 1.680 12.074 hybrid contribution -1.176 1.327 0.306 1.799 sum -0.101 -10.581 1.986 10.766 Atomic orbital electron populations 1.70011 1.07161 1.28003 1.50763 1.25580 0.95473 1.02113 0.94437 0.85616 0.79164 0.79882 0.77741 1.19338 1.20325 1.20718 1.21711 0.93408 0.91526 1.51442 0.92710 1.19069 0.87386 0.82787 0.97376 1.48131 1.45197 1.34125 1.05331 1.21187 0.97980 0.95123 0.85155 1.22243 0.96102 0.97198 0.91385 1.62160 1.56324 1.05684 1.02187 1.22911 1.00183 0.96175 0.92398 1.22741 0.96111 0.86144 0.95907 1.87943 1.75269 1.26062 1.42991 1.22791 1.01712 0.91245 0.85351 1.22866 0.95951 0.92494 0.99816 1.20560 0.80386 0.81977 0.86059 1.90603 1.36609 1.30986 1.88168 1.21448 1.02225 1.01629 0.90876 1.19622 1.01616 0.99896 0.82664 1.25762 0.90667 0.94188 1.00118 1.75900 1.23734 1.16482 1.01395 1.78874 0.97157 1.13258 1.16477 1.47821 1.21439 1.19205 1.17037 0.64907 1.74688 1.21381 1.20298 0.98895 0.92431 0.96318 0.95092 0.90949 0.90631 0.90946 0.95535 0.94905 0.89310 0.91619 0.86796 0.91744 0.86296 0.88650 0.94656 0.88591 0.89042 0.87205 0.87962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.96 13.29 21.45 0.28 -49.67 16 2 C 0.02 1.26 5.46 84.66 0.46 1.72 16 3 Si 0.95 41.69 29.54 68.60 2.03 43.72 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.54 -27.47 9.28 25.60 0.24 -27.23 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.25 11.69 4.97 85.63 0.43 12.12 16 10 N -0.60 -23.92 2.46 -826.16 -2.03 -25.95 16 11 C 0.13 4.62 5.34 86.38 0.46 5.08 16 12 C 0.06 1.88 5.28 86.30 0.46 2.33 16 13 N -0.54 -14.66 4.73 -895.25 -4.23 -18.89 16 14 C 0.01 0.30 5.44 86.32 0.47 0.76 16 15 C 0.07 1.46 7.01 72.02 0.50 1.97 16 16 O -0.40 -9.56 10.83 -148.98 -1.61 -11.17 16 17 C 0.07 1.28 7.01 72.02 0.50 1.78 16 18 C 0.02 0.38 5.64 86.32 0.49 0.87 16 19 C 0.52 20.11 7.67 87.66 0.67 20.78 16 20 O -0.58 -23.66 15.56 -3.02 -0.05 -23.71 16 21 C -0.12 -4.16 4.24 29.85 0.13 -4.04 16 22 C 0.00 0.08 5.13 29.85 0.15 0.23 16 23 C 0.18 5.15 7.62 138.55 1.06 6.21 16 24 N -0.30 -9.60 12.50 -51.26 -0.64 -10.24 16 25 N -0.06 -1.66 13.48 37.02 0.50 -1.16 16 26 N -0.20 -4.09 7.91 37.00 0.29 -3.79 16 27 H 0.49 4.53 8.96 -347.67 -3.12 1.41 16 28 N -0.30 -7.61 12.36 -51.20 -0.63 -8.25 16 29 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 30 H 0.02 0.92 8.07 -2.39 -0.02 0.90 16 31 H 0.03 1.47 6.44 -2.39 -0.02 1.46 16 32 H 0.07 2.63 6.45 -2.39 -0.02 2.61 16 33 H 0.08 2.81 7.42 -2.39 -0.02 2.79 16 34 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 35 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 36 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 2.33 6.38 -2.39 -0.02 2.32 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.10 1.95 8.09 -2.39 -0.02 1.93 16 43 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.10 3.22 7.40 -2.39 -0.02 3.21 16 45 H 0.09 3.54 8.00 -2.39 -0.02 3.52 16 46 H 0.11 2.93 8.10 -2.39 -0.02 2.91 16 47 H 0.10 3.01 8.10 -2.39 -0.02 2.99 16 Total: -1.00 -65.05 388.60 -2.20 -67.25 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -2.12 Total: 19.27 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 6.02 Total: 22.59 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -6.46 Total: -117.95 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.66 Total: -34.88 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -65.05 -2.20 -67.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361944551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.228 kcal (2) G-P(sol) polarization free energy of solvation -65.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds