Wall clock time and date at job start Tue Mar 31 2020 21:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36939 * 120.00232 * 2 1 4 4 H 1.08003 * 119.99977 * 207.13070 * 3 2 1 5 5 C 1.38811 * 120.00015 * 27.13114 * 3 2 1 6 6 N 1.31617 * 120.00004 * 8.72932 * 5 3 2 7 7 Si 1.86798 * 119.99656 * 188.72983 * 5 3 2 8 8 H 1.48497 * 109.47620 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46838 * 120.00398 * 7 5 3 10 10 H 1.48506 * 109.46902 * 239.99877 * 7 5 3 11 11 C 1.46504 * 119.99834 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47299 * 269.99752 * 11 2 1 13 13 O 1.42894 * 109.46849 * 65.00062 * 12 11 2 14 14 C 1.42904 * 113.99792 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46941 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47196 * 64.99836 * 15 14 13 17 17 C 1.46500 * 120.00155 * 90.00067 * 16 15 14 18 18 C 1.34780 * 119.99470 * 270.27376 * 16 15 14 19 19 O 1.21273 * 120.00385 * 5.19604 * 18 16 15 20 20 C 1.50707 * 119.99425 * 185.20086 * 18 16 15 21 21 H 1.09005 * 109.46847 * 344.10706 * 20 18 16 22 22 F 1.39891 * 109.47229 * 104.10716 * 20 18 16 23 23 C 1.50703 * 109.46666 * 224.10817 * 20 18 16 24 24 C 1.38232 * 119.99847 * 294.72464 * 23 20 18 25 25 C 1.38235 * 119.99731 * 179.79071 * 24 23 20 26 26 C 1.38242 * 119.99993 * 0.43820 * 25 24 23 27 27 C 1.38232 * 119.99963 * 359.81562 * 26 25 24 28 28 C 1.38232 * 120.00038 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.46792 * 265.82151 * 1 2 3 30 30 H 1.09004 * 109.47208 * 25.81176 * 1 2 3 31 31 H 1.08991 * 109.47561 * 145.81660 * 1 2 3 32 32 H 0.96996 * 120.00269 * 179.97438 * 6 5 3 33 33 H 1.09007 * 109.47099 * 149.99819 * 11 2 1 34 34 H 1.09002 * 109.47167 * 30.00054 * 11 2 1 35 35 H 1.09004 * 109.46836 * 305.00434 * 12 11 2 36 36 H 1.08995 * 109.47001 * 184.99901 * 12 11 2 37 37 H 1.08992 * 109.47206 * 60.00171 * 14 13 12 38 38 H 1.08997 * 109.46919 * 299.99419 * 14 13 12 39 39 H 1.09003 * 109.47234 * 304.99683 * 15 14 13 40 40 H 1.09002 * 109.46909 * 185.00127 * 15 14 13 41 41 H 1.09000 * 109.46996 * 95.63777 * 17 16 15 42 42 H 1.08997 * 109.46852 * 215.63936 * 17 16 15 43 43 H 1.09000 * 109.46712 * 335.64201 * 17 16 15 44 44 H 1.07998 * 120.00393 * 0.02562 * 24 23 20 45 45 H 1.08000 * 120.00279 * 180.27588 * 25 24 23 46 46 H 1.07999 * 119.99900 * 179.82895 * 26 25 24 47 47 H 1.07997 * 119.99844 * 179.97438 * 27 26 25 48 48 H 1.08006 * 120.00102 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1406 1.2373 -0.4265 5 6 1.5702 2.3219 0.5482 6 7 0.4418 2.2268 1.2190 7 14 2.3921 3.9857 0.3339 8 1 3.6399 3.8236 -0.4546 9 1 1.4707 4.9043 -0.3818 10 1 2.7185 4.5519 1.6674 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 8 1.2061 -1.9945 2.0805 14 6 1.3325 -2.4180 3.4395 15 6 -0.0567 -2.6913 4.0197 16 7 -0.6658 -3.8228 3.3162 17 6 -0.4608 -5.1875 3.8080 18 6 -1.4103 -3.6086 2.2133 19 8 -1.4988 -2.4918 1.7488 20 6 -2.1328 -4.7570 1.5573 21 1 -1.7250 -5.6994 1.9232 22 9 -3.4956 -4.6877 1.8655 23 6 -1.9509 -4.6772 0.0634 24 6 -2.4893 -3.6179 -0.6428 25 6 -2.3187 -3.5424 -2.0125 26 6 -1.6175 -4.5311 -2.6772 27 6 -1.0837 -5.5932 -1.9717 28 6 -1.2505 -5.6664 -0.6014 29 1 -0.3633 -0.0749 1.0250 30 1 -0.3634 0.9252 -0.4475 31 1 -0.3634 -0.8500 -0.5773 32 1 0.0371 3.0205 1.6024 33 1 3.1499 -1.1382 -0.5144 34 1 1.6083 -2.0282 -0.5148 35 1 2.9642 -0.9140 1.9811 36 1 3.0731 -2.6071 1.4426 37 1 1.8207 -1.6354 4.0200 38 1 1.9300 -3.3286 3.4821 39 1 -0.6823 -1.8073 3.8964 40 1 0.0327 -2.9281 5.0800 41 1 -1.3011 -5.4761 4.4395 42 1 -0.3899 -5.8715 2.9624 43 1 0.4610 -5.2299 4.3881 44 1 -3.0399 -2.8472 -0.1240 45 1 -2.7355 -2.7125 -2.5637 46 1 -1.4867 -4.4736 -3.7477 47 1 -0.5362 -6.3658 -2.4910 48 1 -0.8330 -6.4960 -0.0501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479678978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:46 Heat of formation + Delta-G solvation = -58.689795 kcal Electronic energy + Delta-G solvation = -31300.726621 eV Core-core repulsion = 27079.070555 eV Total energy + Delta-G solvation = -4221.656066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -47.93343 -39.82098 -38.78185 -37.24197 -35.61672 -34.79656 -32.48092 -31.38601 -30.82585 -30.08610 -27.91472 -27.25057 -26.32891 -25.47452 -23.02701 -22.69332 -22.58242 -21.42890 -20.14075 -19.28938 -17.63448 -17.19497 -16.73634 -16.52052 -16.17009 -15.65937 -15.64130 -15.10601 -14.87374 -14.54828 -14.32783 -14.25266 -14.02881 -13.52896 -13.33585 -13.20110 -13.05932 -12.91287 -12.73639 -12.61583 -12.37226 -12.11638 -12.04935 -11.85353 -11.33009 -11.20984 -11.04275 -10.87028 -10.79030 -10.71329 -10.60946 -10.31852 -9.83207 -9.73466 -9.69181 -9.50026 -8.81940 -8.79562 -8.73782 -8.56689 -8.31794 -6.42063 -5.52867 -3.00483 1.27065 1.50247 2.71691 2.90096 3.45555 3.52239 3.54350 3.83008 4.22934 4.31216 4.40856 4.45875 4.64299 4.88513 4.95221 5.04254 5.13811 5.17649 5.26516 5.37718 5.43772 5.47596 5.54751 5.57032 5.60224 5.69522 5.75982 5.81112 5.94389 6.10996 6.11822 6.23117 6.38807 6.43693 6.44676 6.52835 6.57858 6.62582 6.71639 6.95770 7.02758 7.32252 7.37058 7.75543 7.97683 8.07908 8.23929 8.37477 8.64135 9.46506 10.10459 10.64663 11.51645 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.004123 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.081603 B = 6790.251313 C = 7961.750967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.593 5.593 3 C -0.255 4.255 4 H 0.062 0.938 5 C 0.004 3.996 6 N -0.897 5.897 7 Si 0.897 3.103 8 H -0.279 1.279 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.157 3.843 12 C 0.044 3.956 13 O -0.344 6.344 14 C 0.045 3.955 15 C 0.122 3.878 16 N -0.613 5.613 17 C 0.075 3.925 18 C 0.490 3.510 19 O -0.459 6.459 20 C 0.125 3.875 21 H 0.103 0.897 22 F -0.187 7.187 23 C -0.126 4.126 24 C -0.060 4.060 25 C -0.119 4.119 26 C -0.106 4.106 27 C -0.130 4.130 28 C -0.099 4.099 29 H 0.032 0.968 30 H 0.039 0.961 31 H -0.013 1.013 32 H 0.249 0.751 33 H 0.052 0.948 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.016 0.984 37 H 0.050 0.950 38 H 0.033 0.967 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.132 0.868 45 H 0.126 0.874 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 -21.082 2.682 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.315 5.315 3 C -0.385 4.385 4 H 0.080 0.920 5 C -0.195 4.195 6 N -0.542 5.542 7 Si 0.728 3.272 8 H -0.205 1.205 9 H -0.218 1.218 10 H -0.219 1.219 11 C 0.028 3.972 12 C -0.036 4.036 13 O -0.263 6.263 14 C -0.034 4.034 15 C 0.000 4.000 16 N -0.349 5.349 17 C -0.068 4.068 18 C 0.272 3.728 19 O -0.328 6.328 20 C 0.085 3.915 21 H 0.121 0.879 22 F -0.168 7.168 23 C -0.126 4.126 24 C -0.078 4.078 25 C -0.137 4.137 26 C -0.124 4.124 27 C -0.148 4.148 28 C -0.117 4.117 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.006 0.994 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.150 0.850 45 H 0.144 0.856 46 H 0.140 0.860 47 H 0.140 0.860 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.770 -20.271 2.391 20.757 hybrid contribution 0.887 0.845 0.429 1.298 sum -2.883 -19.426 2.819 19.840 Atomic orbital electron populations 1.20593 0.81679 0.95344 0.98596 1.43836 1.02272 0.99879 1.85551 1.19210 1.00692 0.86710 1.31899 0.92015 1.25117 0.97922 0.98440 0.97971 1.70117 1.19293 1.27270 1.37493 0.86293 0.78798 0.84958 0.77153 1.20463 1.21759 1.21907 1.20811 0.95900 0.89141 0.91314 1.23443 0.85571 0.96191 0.98389 1.88188 1.29049 1.86941 1.22077 1.22747 0.96256 0.97437 0.86913 1.21547 0.94204 0.90003 0.94279 1.47714 1.51666 1.07351 1.28218 1.21843 1.02092 0.83029 0.99837 1.20552 0.80756 0.90480 0.80979 1.90902 1.58866 1.23428 1.59600 1.20409 0.78089 0.99630 0.93327 0.87932 1.92888 1.32114 1.97641 1.94109 1.19682 1.02537 0.97456 0.92973 1.21096 0.96697 0.95916 0.94060 1.21205 0.99291 0.98788 0.94448 1.21229 0.96986 0.94203 0.99985 1.21008 1.00890 0.98933 0.93923 1.20863 0.98308 0.97769 0.94802 0.94932 0.94213 0.99421 0.94092 0.92971 0.94262 0.93767 0.96602 0.93177 0.94877 0.88624 0.89615 0.92431 0.91511 0.90582 0.85019 0.85613 0.86008 0.85972 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 5.14 8.63 59.84 0.52 5.65 16 2 N -0.59 -16.32 2.88 -181.12 -0.52 -16.84 16 3 C -0.25 -7.43 9.62 -15.06 -0.14 -7.57 16 4 H 0.06 1.75 7.84 -52.48 -0.41 1.34 16 5 C 0.00 0.13 5.12 -17.43 -0.09 0.04 16 6 N -0.90 -27.83 10.79 55.49 0.60 -27.24 16 7 Si 0.90 22.77 29.56 -169.99 -5.03 17.74 16 8 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 10 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 11 C 0.16 3.60 6.12 -4.04 -0.02 3.57 16 12 C 0.04 0.92 6.28 37.16 0.23 1.15 16 13 O -0.34 -7.31 8.34 -48.83 -0.41 -7.71 16 14 C 0.05 0.73 6.28 37.16 0.23 0.96 16 15 C 0.12 1.71 5.82 -4.04 -0.02 1.69 16 16 N -0.61 -8.03 2.86 -181.56 -0.52 -8.55 16 17 C 0.08 0.60 9.92 59.85 0.59 1.19 16 18 C 0.49 7.83 6.69 -10.98 -0.07 7.76 16 19 O -0.46 -9.60 13.75 -8.03 -0.11 -9.71 16 20 C 0.12 1.63 3.66 -29.03 -0.11 1.52 16 21 H 0.10 0.95 5.33 -51.93 -0.28 0.67 16 22 F -0.19 -2.66 16.91 2.25 0.04 -2.63 16 23 C -0.13 -1.77 5.00 -104.62 -0.52 -2.29 16 24 C -0.06 -0.93 8.55 -39.58 -0.34 -1.27 16 25 C -0.12 -1.68 10.05 -39.58 -0.40 -2.07 16 26 C -0.11 -1.29 10.05 -39.58 -0.40 -1.69 16 27 C -0.13 -1.47 10.05 -39.59 -0.40 -1.87 16 28 C -0.10 -1.17 9.67 -39.58 -0.38 -1.55 16 29 H 0.03 1.00 7.69 -51.93 -0.40 0.60 16 30 H 0.04 1.19 6.88 -51.93 -0.36 0.83 16 31 H -0.01 -0.34 7.95 -51.93 -0.41 -0.75 16 32 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.05 1.12 8.04 -51.92 -0.42 0.70 16 34 H 0.04 0.89 7.93 -51.93 -0.41 0.47 16 35 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 1.67 7.51 -51.93 -0.39 1.28 16 40 H 0.09 0.86 8.07 -51.93 -0.42 0.44 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.44 6.27 -51.93 -0.33 0.11 16 43 H 0.08 0.49 8.03 -51.93 -0.42 0.07 16 44 H 0.13 2.25 7.43 -52.49 -0.39 1.86 16 45 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 46 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 47 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.12 1.04 7.95 -52.48 -0.42 0.62 16 LS Contribution 398.04 15.07 6.00 6.00 Total: -1.00 -36.59 398.04 -8.83 -45.42 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.56 Total: -1.71 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.32 Total: 5.21 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.44 Total: -52.62 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.52 Total: -17.42 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.59 -8.83 -45.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479678978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.267 kcal (2) G-P(sol) polarization free energy of solvation -36.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds