Wall clock time and date at job start Tue Mar 31 2020 21:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36939 * 120.00232 * 2 1 4 4 H 1.08003 * 119.99977 * 207.13070 * 3 2 1 5 5 C 1.38811 * 120.00015 * 27.13114 * 3 2 1 6 6 N 1.31617 * 120.00004 * 8.72932 * 5 3 2 7 7 Si 1.86798 * 119.99656 * 188.72983 * 5 3 2 8 8 H 1.48497 * 109.47620 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46838 * 120.00398 * 7 5 3 10 10 H 1.48506 * 109.46902 * 239.99877 * 7 5 3 11 11 C 1.46504 * 119.99834 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47299 * 269.99752 * 11 2 1 13 13 O 1.42894 * 109.46849 * 65.00062 * 12 11 2 14 14 C 1.42904 * 113.99792 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46941 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47196 * 64.99836 * 15 14 13 17 17 C 1.46500 * 120.00155 * 90.00067 * 16 15 14 18 18 C 1.34780 * 119.99470 * 270.27376 * 16 15 14 19 19 O 1.21273 * 120.00385 * 5.19604 * 18 16 15 20 20 C 1.50707 * 119.99425 * 185.20086 * 18 16 15 21 21 H 1.09005 * 109.46847 * 344.10706 * 20 18 16 22 22 F 1.39891 * 109.47229 * 104.10716 * 20 18 16 23 23 C 1.50703 * 109.46666 * 224.10817 * 20 18 16 24 24 C 1.38232 * 119.99847 * 294.72464 * 23 20 18 25 25 C 1.38235 * 119.99731 * 179.79071 * 24 23 20 26 26 C 1.38242 * 119.99993 * 0.43820 * 25 24 23 27 27 C 1.38232 * 119.99963 * 359.81562 * 26 25 24 28 28 C 1.38232 * 120.00038 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.46792 * 265.82151 * 1 2 3 30 30 H 1.09004 * 109.47208 * 25.81176 * 1 2 3 31 31 H 1.08991 * 109.47561 * 145.81660 * 1 2 3 32 32 H 0.96996 * 120.00269 * 179.97438 * 6 5 3 33 33 H 1.09007 * 109.47099 * 149.99819 * 11 2 1 34 34 H 1.09002 * 109.47167 * 30.00054 * 11 2 1 35 35 H 1.09004 * 109.46836 * 305.00434 * 12 11 2 36 36 H 1.08995 * 109.47001 * 184.99901 * 12 11 2 37 37 H 1.08992 * 109.47206 * 60.00171 * 14 13 12 38 38 H 1.08997 * 109.46919 * 299.99419 * 14 13 12 39 39 H 1.09003 * 109.47234 * 304.99683 * 15 14 13 40 40 H 1.09002 * 109.46909 * 185.00127 * 15 14 13 41 41 H 1.09000 * 109.46996 * 95.63777 * 17 16 15 42 42 H 1.08997 * 109.46852 * 215.63936 * 17 16 15 43 43 H 1.09000 * 109.46712 * 335.64201 * 17 16 15 44 44 H 1.07998 * 120.00393 * 0.02562 * 24 23 20 45 45 H 1.08000 * 120.00279 * 180.27588 * 25 24 23 46 46 H 1.07999 * 119.99900 * 179.82895 * 26 25 24 47 47 H 1.07997 * 119.99844 * 179.97438 * 27 26 25 48 48 H 1.08006 * 120.00102 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1406 1.2373 -0.4265 5 6 1.5702 2.3219 0.5482 6 7 0.4418 2.2268 1.2190 7 14 2.3921 3.9857 0.3339 8 1 3.6399 3.8236 -0.4546 9 1 1.4707 4.9043 -0.3818 10 1 2.7185 4.5519 1.6674 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 8 1.2061 -1.9945 2.0805 14 6 1.3325 -2.4180 3.4395 15 6 -0.0567 -2.6913 4.0197 16 7 -0.6658 -3.8228 3.3162 17 6 -0.4608 -5.1875 3.8080 18 6 -1.4103 -3.6086 2.2133 19 8 -1.4988 -2.4918 1.7488 20 6 -2.1328 -4.7570 1.5573 21 1 -1.7250 -5.6994 1.9232 22 9 -3.4956 -4.6877 1.8655 23 6 -1.9509 -4.6772 0.0634 24 6 -2.4893 -3.6179 -0.6428 25 6 -2.3187 -3.5424 -2.0125 26 6 -1.6175 -4.5311 -2.6772 27 6 -1.0837 -5.5932 -1.9717 28 6 -1.2505 -5.6664 -0.6014 29 1 -0.3633 -0.0749 1.0250 30 1 -0.3634 0.9252 -0.4475 31 1 -0.3634 -0.8500 -0.5773 32 1 0.0371 3.0205 1.6024 33 1 3.1499 -1.1382 -0.5144 34 1 1.6083 -2.0282 -0.5148 35 1 2.9642 -0.9140 1.9811 36 1 3.0731 -2.6071 1.4426 37 1 1.8207 -1.6354 4.0200 38 1 1.9300 -3.3286 3.4821 39 1 -0.6823 -1.8073 3.8964 40 1 0.0327 -2.9281 5.0800 41 1 -1.3011 -5.4761 4.4395 42 1 -0.3899 -5.8715 2.9624 43 1 0.4610 -5.2299 4.3881 44 1 -3.0399 -2.8472 -0.1240 45 1 -2.7355 -2.7125 -2.5637 46 1 -1.4867 -4.4736 -3.7477 47 1 -0.5362 -6.3658 -2.4910 48 1 -0.8330 -6.4960 -0.0501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479678978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:45 Heat of formation + Delta-G solvation = -81.178173 kcal Electronic energy + Delta-G solvation = -31301.701790 eV Core-core repulsion = 27079.070555 eV Total energy + Delta-G solvation = -4222.631235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.00321 -40.93934 -39.79628 -38.81578 -37.21782 -36.40731 -33.62722 -33.32138 -31.79779 -31.44885 -29.69048 -28.22391 -27.78519 -27.26067 -24.85335 -24.03639 -23.56235 -22.47233 -22.13958 -20.36066 -18.78077 -18.64174 -18.18607 -17.78017 -17.31365 -17.22611 -16.85402 -16.67319 -16.15470 -16.13943 -15.46414 -15.40536 -15.26289 -15.12508 -14.89793 -14.78322 -14.29414 -13.96795 -13.82487 -13.66724 -13.60602 -13.42827 -13.36684 -13.11454 -12.97623 -12.83539 -12.63241 -12.56699 -12.44372 -12.25568 -12.03655 -12.01026 -11.81416 -11.77803 -11.66860 -10.69861 -10.60210 -10.27891 -9.80650 -9.78548 -9.62103 -8.66132 -7.78857 -5.30258 0.28113 0.51068 1.43416 1.44989 1.55592 1.55937 1.89623 2.51208 2.84109 2.99592 3.30664 3.34599 3.37354 3.54411 3.76797 4.01171 4.14915 4.15479 4.20832 4.25590 4.29009 4.29040 4.39121 4.48404 4.55741 4.57924 4.59215 4.67865 4.70609 4.76404 4.92303 4.93403 4.96298 4.99992 5.01651 5.13527 5.17964 5.36786 5.49305 5.53874 5.58055 5.62074 5.64815 5.90619 6.07031 6.33776 6.37633 6.62000 7.18526 7.20108 7.90753 8.42077 9.25886 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.004123 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.081603 B = 6790.251313 C = 7961.750967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.219 3.781 2 N -0.608 5.608 3 C -0.264 4.264 4 H 0.072 0.928 5 C -0.054 4.054 6 N -0.935 5.935 7 Si 0.970 3.030 8 H -0.261 1.261 9 H -0.293 1.293 10 H -0.292 1.292 11 C 0.153 3.847 12 C 0.054 3.946 13 O -0.376 6.376 14 C 0.040 3.960 15 C 0.125 3.875 16 N -0.608 5.608 17 C 0.063 3.937 18 C 0.478 3.522 19 O -0.525 6.525 20 C 0.130 3.870 21 H 0.152 0.848 22 F -0.198 7.198 23 C -0.143 4.143 24 C -0.092 4.092 25 C -0.143 4.143 26 C -0.110 4.110 27 C -0.127 4.127 28 C -0.095 4.095 29 H -0.003 1.003 30 H 0.009 0.991 31 H -0.007 1.007 32 H 0.244 0.756 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.018 0.982 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.133 0.867 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.122 0.878 46 H 0.146 0.854 47 H 0.159 0.841 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -24.558 2.931 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.331 5.331 3 C -0.395 4.395 4 H 0.090 0.910 5 C -0.249 4.249 6 N -0.582 5.582 7 Si 0.798 3.202 8 H -0.185 1.185 9 H -0.220 1.220 10 H -0.219 1.219 11 C 0.026 3.974 12 C -0.025 4.025 13 O -0.295 6.295 14 C -0.037 4.037 15 C 0.003 3.997 16 N -0.343 5.343 17 C -0.077 4.077 18 C 0.262 3.738 19 O -0.399 6.399 20 C 0.092 3.908 21 H 0.169 0.831 22 F -0.179 7.179 23 C -0.144 4.144 24 C -0.110 4.110 25 C -0.161 4.161 26 C -0.128 4.128 27 C -0.144 4.144 28 C -0.113 4.113 29 H 0.016 0.984 30 H 0.028 0.972 31 H 0.011 0.989 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.151 0.849 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.140 0.860 46 H 0.163 0.837 47 H 0.177 0.823 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.121 -23.823 2.664 23.998 hybrid contribution 0.086 1.816 0.372 1.856 sum -1.035 -22.007 3.036 22.239 Atomic orbital electron populations 1.20014 0.82797 0.93705 0.96086 1.44001 1.01838 1.01394 1.85893 1.19594 1.00926 0.87552 1.31392 0.91023 1.25969 0.98611 1.02381 0.97950 1.70329 1.21051 1.27930 1.38846 0.85159 0.78188 0.79811 0.77017 1.18549 1.22025 1.21857 1.20981 0.96042 0.87164 0.93194 1.23135 0.86016 0.97089 0.96289 1.88182 1.29280 1.87407 1.24654 1.22998 0.97894 0.98442 0.84414 1.21516 0.92266 0.89228 0.96730 1.47863 1.50146 1.09248 1.26999 1.22257 1.04201 0.80036 1.01242 1.21220 0.80771 0.90435 0.81330 1.90889 1.61211 1.26098 1.61699 1.20581 0.77246 1.00268 0.92747 0.83079 1.92860 1.33197 1.97715 1.94136 1.19926 1.03143 0.97691 0.93629 1.21007 0.98459 0.96564 0.94975 1.21338 1.00642 0.99951 0.94135 1.21563 0.96138 0.93804 1.01307 1.21501 0.99897 0.98985 0.94034 1.21328 0.96848 0.97781 0.95318 0.98428 0.97207 0.98856 0.94678 0.91227 0.94055 0.96352 0.92401 0.94088 0.91331 0.93457 0.84909 0.90460 0.89477 0.88199 0.88611 0.85983 0.83658 0.82300 0.82072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.22 13.11 8.63 127.77 1.10 14.22 16 2 N -0.61 -34.31 2.88 -726.93 -2.09 -36.40 16 3 C -0.26 -15.60 9.62 84.03 0.81 -14.79 16 4 H 0.07 4.02 7.84 -2.91 -0.02 4.00 16 5 C -0.05 -3.25 5.12 84.86 0.43 -2.82 16 6 N -0.94 -60.67 10.79 21.65 0.23 -60.43 16 7 Si 0.97 47.67 29.56 68.60 2.03 49.70 16 8 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 9 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 10 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 11 C 0.15 6.96 6.12 86.38 0.53 7.48 16 12 C 0.05 2.22 6.28 71.98 0.45 2.67 16 13 O -0.38 -16.10 8.34 -135.98 -1.13 -17.23 16 14 C 0.04 1.26 6.28 71.98 0.45 1.72 16 15 C 0.13 3.46 5.82 86.38 0.50 3.97 16 16 N -0.61 -14.95 2.86 -846.74 -2.42 -17.37 16 17 C 0.06 0.72 9.92 127.77 1.27 1.99 16 18 C 0.48 15.50 6.69 87.66 0.59 16.09 16 19 O -0.53 -23.73 13.75 9.99 0.14 -23.59 16 20 C 0.13 3.28 3.66 29.10 0.11 3.39 16 21 H 0.15 2.20 5.33 -2.38 -0.01 2.18 16 22 F -0.20 -5.74 16.91 44.97 0.76 -4.98 16 23 C -0.14 -3.98 5.00 -19.86 -0.10 -4.08 16 24 C -0.09 -3.11 8.55 22.27 0.19 -2.92 16 25 C -0.14 -4.26 10.05 22.27 0.22 -4.04 16 26 C -0.11 -2.57 10.05 22.27 0.22 -2.35 16 27 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 28 C -0.10 -1.94 9.67 22.27 0.22 -1.72 16 29 H 0.00 -0.18 7.69 -2.39 -0.02 -0.20 16 30 H 0.01 0.59 6.88 -2.39 -0.02 0.58 16 31 H -0.01 -0.40 7.95 -2.39 -0.02 -0.42 16 32 H 0.24 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.07 2.89 8.04 -2.38 -0.02 2.87 16 34 H 0.04 1.85 7.93 -2.39 -0.02 1.83 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 1.78 7.51 -2.39 -0.02 1.76 16 40 H 0.13 2.34 8.07 -2.39 -0.02 2.32 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 0.66 6.27 -2.39 -0.01 0.65 16 43 H 0.10 0.72 8.03 -2.39 -0.02 0.70 16 44 H 0.10 3.80 7.43 -2.91 -0.02 3.78 16 45 H 0.12 3.49 8.06 -2.91 -0.02 3.46 16 46 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 47 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 48 H 0.16 1.88 7.95 -2.91 -0.02 1.86 16 Total: -1.00 -87.26 398.04 5.67 -81.59 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.94 Total: 12.17 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 7.22 Total: 16.55 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -4.28 Total: -114.21 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -1.00 Total: -40.83 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.76 Total: -4.98 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -87.26 5.67 -81.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479678978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.413 kcal (2) G-P(sol) polarization free energy of solvation -87.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds