Wall clock time and date at job start Tue Mar 31 2020 22:07:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 N 1.30371 * 125.96551 * 2 1
4 4 N 1.39917 * 109.02026 * 180.28816 * 3 2 1
5 5 C 1.46504 * 125.74214 * 179.74996 * 4 3 2
6 6 C 1.34414 * 108.51680 * 359.70972 * 4 3 2
7 7 F 1.35095 * 126.34701 * 179.97438 * 6 4 3
8 8 C 1.38512 * 107.30691 * 0.02562 * 6 4 3
9 9 C 1.47168 * 126.45546 * 179.97438 * 8 6 4
10 10 O 1.21628 * 120.00036 * 90.02523 * 9 8 6
11 11 N 1.34777 * 119.99784 * 270.02818 * 9 8 6
12 12 C 1.46930 * 120.63311 * 5.38528 * 11 9 8
13 13 C 1.53195 * 108.77483 * 233.59028 * 12 11 9
14 14 C 1.53035 * 109.31320 * 305.36330 * 13 12 11
15 15 C 1.53041 * 109.53908 * 61.36542 * 14 13 12
16 16 C 1.46925 * 120.63105 * 185.36849 * 11 9 8
17 17 H 1.09000 * 109.58724 * 246.34112 * 16 11 9
18 18 C 1.53004 * 109.58245 * 6.62015 * 16 11 9
19 19 C 1.53005 * 109.46928 * 178.26501 * 18 16 11
20 20 N 1.46494 * 109.47287 * 174.92850 * 19 18 16
21 21 C 1.36941 * 120.00233 * 180.27230 * 20 19 18
22 22 H 1.07995 * 119.99655 * 359.72589 * 21 20 19
23 23 C 1.38806 * 119.99856 * 179.72257 * 21 20 19
24 24 N 1.31617 * 120.00454 * 0.02562 * 23 21 20
25 25 Si 1.86808 * 119.99783 * 180.02562 * 23 21 20
26 26 H 1.48494 * 109.46915 * 60.00076 * 25 23 21
27 27 H 1.48498 * 109.47056 * 179.97438 * 25 23 21
28 28 H 1.48493 * 109.47083 * 300.00232 * 25 23 21
29 29 H 1.09006 * 109.47225 * 270.19131 * 1 2 3
30 30 H 1.09008 * 109.47439 * 30.18721 * 1 2 3
31 31 H 1.09002 * 109.47434 * 150.18904 * 1 2 3
32 32 H 1.08998 * 109.47159 * 269.95105 * 5 4 3
33 33 H 1.08992 * 109.47338 * 29.95361 * 5 4 3
34 34 H 1.09008 * 109.46716 * 149.95598 * 5 4 3
35 35 H 1.09005 * 109.58272 * 353.37262 * 12 11 9
36 36 H 1.08989 * 109.58855 * 113.80379 * 12 11 9
37 37 H 1.08998 * 109.49559 * 65.31563 * 13 12 11
38 38 H 1.08994 * 109.49530 * 185.38019 * 13 12 11
39 39 H 1.09002 * 109.46183 * 181.38674 * 14 13 12
40 40 H 1.08997 * 109.46438 * 301.34973 * 14 13 12
41 41 H 1.09001 * 109.50063 * 178.68186 * 15 14 13
42 42 H 1.09000 * 109.49868 * 58.58526 * 15 14 13
43 43 H 1.08993 * 109.47393 * 58.26584 * 18 16 11
44 44 H 1.09001 * 109.47097 * 298.26175 * 18 16 11
45 45 H 1.09001 * 109.47067 * 54.92574 * 19 18 16
46 46 H 1.09006 * 109.46869 * 294.92578 * 19 18 16
47 47 H 0.97008 * 120.00103 * 359.97438 * 20 19 18
48 48 H 0.97004 * 120.00371 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2726 1.0552 0.0000
4 7 3.6111 0.6474 -0.0067
5 6 4.7762 1.5355 -0.0140
6 6 3.6479 -0.6962 -0.0043
7 9 4.7576 -1.4668 -0.0095
8 6 2.3374 -1.1444 0.0032
9 6 1.8930 -2.5474 0.0076
10 8 1.7144 -3.1255 1.0627
11 7 1.6839 -3.1916 -1.1576
12 6 2.0070 -2.5472 -2.4379
13 6 0.7687 -2.5915 -3.3386
14 6 0.2878 -4.0386 -3.4672
15 6 -0.0996 -4.5738 -2.0867
16 6 1.1289 -4.5519 -1.1718
17 1 1.8787 -5.2487 -1.5466
18 6 0.7192 -4.9535 0.2467
19 6 0.1020 -6.3533 0.2222
20 7 -0.1791 -6.7870 1.5930
21 6 -0.7323 -8.0187 1.8216
22 1 -0.9655 -8.6684 0.9911
23 6 -0.9933 -8.4319 3.1208
24 7 -0.7095 -7.6399 4.1329
25 14 -1.7473 -10.1124 3.4327
26 1 -0.8491 -11.1654 2.8948
27 1 -1.9243 -10.3121 4.8935
28 1 -3.0674 -10.1956 2.7577
29 1 -0.3634 0.0034 1.0277
30 1 -0.3634 0.8883 -0.5168
31 1 -0.3634 -0.8917 -0.5109
32 1 5.0602 1.7537 -1.0434
33 1 4.5283 2.4644 0.4993
34 1 5.6072 1.0487 0.4968
35 1 2.2945 -1.5104 -2.2627
36 1 2.8275 -3.0800 -2.9183
37 1 -0.0221 -1.9830 -2.9000
38 1 1.0221 -2.2029 -4.3249
39 1 -0.5786 -4.0762 -4.1275
40 1 1.0876 -4.6516 -3.8828
41 1 -0.4640 -5.5967 -2.1822
42 1 -0.8823 -3.9466 -1.6599
43 1 -0.0113 -4.2409 0.6293
44 1 1.5978 -4.9550 0.8918
45 1 0.7992 -7.0497 -0.2435
46 1 -0.8259 -6.3313 -0.3494
47 1 0.0307 -6.2035 2.3390
48 1 -0.8923 -7.9285 5.0408
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001482461377.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:07:28
Heat of formation + Delta-G solvation = 0.262136 kcal
Electronic energy + Delta-G solvation = -30585.164524 eV
Core-core repulsion = 26398.357557 eV
Total energy + Delta-G solvation = -4186.806967 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.186 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-50.48475 -42.62108 -41.25973 -38.40536 -36.96186 -35.33602 -34.48852 -33.79861
-32.45717 -31.37477 -30.45679 -29.27258 -27.39930 -26.22668 -25.35945 -24.40642
-23.21960 -22.12526 -21.90498 -21.54126 -20.21013 -19.22292 -18.68050 -18.06443
-17.56824 -17.34591 -17.09917 -16.62346 -16.10777 -15.77410 -15.66599 -15.55882
-15.40640 -15.04294 -14.88543 -14.70134 -14.61122 -14.43748 -14.31448 -14.09205
-13.83648 -13.68070 -13.34816 -13.31423 -13.04839 -12.90671 -12.75641 -12.70050
-12.34441 -12.15443 -12.01343 -11.89098 -11.85134 -11.74591 -11.52473 -11.37710
-10.90408 -10.44158 -10.30123 -9.77000 -9.58270 -8.99254 -7.92710 -5.23557
0.19039 0.85498 1.09250 1.42099 1.45774 1.51265 1.57339 1.99399
2.57226 2.71519 3.19233 3.39348 3.56119 3.72157 3.85461 3.88688
3.96390 4.09338 4.13061 4.16147 4.21576 4.27438 4.30026 4.44719
4.50917 4.57560 4.58290 4.65720 4.72511 4.73268 4.75347 4.83154
4.84682 4.94527 5.00967 5.11833 5.20326 5.25656 5.28299 5.40594
5.42929 5.51332 5.53450 5.60138 5.72611 6.21527 6.28006 6.38185
7.15442 7.32562 8.10249 8.34335 9.31401
Molecular weight = 338.19amu
Principal moments of inertia in cm(-1)
A = 0.014296 B = 0.002938 C = 0.002668
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1958.106140 B = 9528.219712 C =10494.145491
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.130 3.870
3 N -0.276 5.276
4 N -0.366 5.366
5 C 0.081 3.919
6 C 0.285 3.715
7 F -0.090 7.090
8 C -0.302 4.302
9 C 0.589 3.411
10 O -0.560 6.560
11 N -0.594 5.594
12 C 0.107 3.893
13 C -0.127 4.127
14 C -0.114 4.114
15 C -0.128 4.128
16 C 0.157 3.843
17 H 0.081 0.919
18 C -0.097 4.097
19 C 0.150 3.850
20 N -0.750 5.750
21 C -0.248 4.248
22 H 0.080 0.920
23 C -0.083 4.083
24 N -0.974 5.974
25 Si 0.982 3.018
26 H -0.275 1.275
27 H -0.295 1.295
28 H -0.273 1.273
29 H 0.084 0.916
30 H 0.106 0.894
31 H 0.079 0.921
32 H 0.107 0.893
33 H 0.114 0.886
34 H 0.104 0.896
35 H 0.083 0.917
36 H 0.082 0.918
37 H 0.065 0.935
38 H 0.101 0.899
39 H 0.081 0.919
40 H 0.073 0.927
41 H 0.078 0.922
42 H 0.058 0.942
43 H 0.045 0.955
44 H 0.060 0.940
45 H 0.018 0.982
46 H 0.028 0.972
47 H 0.369 0.631
48 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.759 22.540 -20.927 32.268
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.036 4.036
3 N -0.100 5.100
4 N -0.150 5.150
5 C -0.058 4.058
6 C 0.136 3.864
7 F -0.069 7.069
8 C -0.318 4.318
9 C 0.376 3.624
10 O -0.438 6.438
11 N -0.326 5.326
12 C -0.014 4.014
13 C -0.165 4.165
14 C -0.151 4.151
15 C -0.166 4.166
16 C 0.054 3.946
17 H 0.099 0.901
18 C -0.135 4.135
19 C 0.023 3.977
20 N -0.392 5.392
21 C -0.379 4.379
22 H 0.098 0.902
23 C -0.274 4.274
24 N -0.625 5.625
25 Si 0.810 3.190
26 H -0.201 1.201
27 H -0.221 1.221
28 H -0.199 1.199
29 H 0.102 0.898
30 H 0.125 0.875
31 H 0.098 0.902
32 H 0.125 0.875
33 H 0.132 0.868
34 H 0.123 0.877
35 H 0.102 0.898
36 H 0.100 0.900
37 H 0.084 0.916
38 H 0.119 0.881
39 H 0.100 0.900
40 H 0.092 0.908
41 H 0.096 0.904
42 H 0.077 0.923
43 H 0.064 0.936
44 H 0.078 0.922
45 H 0.036 0.964
46 H 0.046 0.954
47 H 0.200 0.800
48 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges 9.833 23.414 -20.466 32.615
hybrid contribution 0.268 -1.780 1.263 2.199
sum 10.102 21.634 -19.203 30.640
Atomic orbital electron populations
1.20400 0.83969 1.04944 1.04330 1.22436 0.98053 0.87339 0.95770
1.77279 0.84700 1.20952 1.27046 1.49028 1.07914 1.02264 1.55836
1.22519 0.82442 0.94568 1.06250 1.17773 0.82969 0.82687 1.02922
1.91657 1.49603 1.71803 1.93833 1.19718 0.91378 0.95134 1.25611
1.17520 0.76725 0.84606 0.83584 1.90949 1.52356 1.67102 1.33413
1.48177 1.62345 1.15743 1.06317 1.21937 0.98776 0.98343 0.82371
1.21904 0.96865 0.97335 1.00404 1.21521 1.02242 0.96086 0.95282
1.22007 0.96103 1.02513 0.95985 1.21216 0.96095 0.82071 0.95210
0.90149 1.21946 1.00636 0.94776 0.96116 1.20958 0.96694 0.93993
0.86010 1.42658 1.75201 1.17844 1.03468 1.19683 1.31969 0.93804
0.92481 0.90227 1.25725 1.03583 1.02754 0.95365 1.69877 1.55683
1.38694 0.98273 0.85093 0.78573 0.79126 0.76251 1.20130 1.22133
1.19932 0.89764 0.87533 0.90190 0.87452 0.86781 0.87739 0.89836
0.89991 0.91600 0.88058 0.90023 0.90826 0.90374 0.92293 0.93594
0.92156 0.96364 0.95368 0.79986 0.94037
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.43 10.28 71.24 0.73 -0.70 16
2 C 0.13 2.98 7.26 43.55 0.32 3.29 16
3 N -0.28 -5.92 12.49 -46.65 -0.58 -6.50 16
4 N -0.37 -6.78 3.98 -368.85 -1.47 -8.25 16
5 C 0.08 0.65 11.43 127.77 1.46 2.11 16
6 C 0.29 6.62 8.62 84.36 0.73 7.35 16
7 F -0.09 -2.08 17.31 44.97 0.78 -1.30 16
8 C -0.30 -8.03 3.86 -20.09 -0.08 -8.11 16
9 C 0.59 18.98 7.07 86.59 0.61 19.59 16
10 O -0.56 -24.05 12.65 -4.12 -0.05 -24.11 16
11 N -0.59 -15.47 2.97 -799.16 -2.38 -17.84 16
12 C 0.11 1.82 6.35 86.36 0.55 2.36 16
13 C -0.13 -1.64 6.08 30.67 0.19 -1.45 16
14 C -0.11 -1.71 5.88 30.62 0.18 -1.53 16
15 C -0.13 -2.95 4.82 30.67 0.15 -2.80 16
16 C 0.16 4.52 3.03 44.98 0.14 4.66 16
17 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16
18 C -0.10 -3.90 3.29 30.60 0.10 -3.80 16
19 C 0.15 6.75 5.73 86.38 0.50 7.25 16
20 N -0.75 -43.26 5.60 -343.45 -1.92 -45.19 16
21 C -0.25 -14.99 9.99 84.03 0.84 -14.15 16
22 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16
23 C -0.08 -5.09 5.50 84.86 0.47 -4.62 16
24 N -0.97 -64.58 13.06 21.65 0.28 -64.30 16
25 Si 0.98 48.59 29.55 68.60 2.03 50.62 16
26 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16
27 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16
28 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16
29 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16
30 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16
31 H 0.08 1.50 8.01 -2.39 -0.02 1.48 16
32 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16
33 H 0.11 0.64 8.14 -2.39 -0.02 0.63 16
34 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16
35 H 0.08 1.37 6.26 -2.38 -0.01 1.35 16
36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16
39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
41 H 0.08 1.88 6.86 -2.39 -0.02 1.86 16
42 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16
43 H 0.05 2.02 7.24 -2.39 -0.02 2.01 16
44 H 0.06 2.85 6.23 -2.39 -0.01 2.83 16
45 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16
46 H 0.03 1.21 6.84 -2.38 -0.02 1.19 16
47 H 0.37 23.33 7.67 -92.70 -0.71 22.62 16
48 H 0.25 16.00 8.31 -92.71 -0.77 15.23 16
Total: -1.00 -82.71 389.23 3.82 -78.89
By element:
Atomic # 1 Polarization: 28.25 SS G_CDS: 0.26 Total: 28.51 kcal
Atomic # 6 Polarization: 2.59 SS G_CDS: 6.87 Total: 9.46 kcal
Atomic # 7 Polarization: -136.00 SS G_CDS: -6.07 Total: -142.07 kcal
Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.11 kcal
Atomic # 9 Polarization: -2.08 SS G_CDS: 0.78 Total: -1.30 kcal
Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal
Total: -82.71 3.82 -78.89 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001482461377.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.150 kcal
(2) G-P(sol) polarization free energy of solvation -82.710 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.560 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.888 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.262 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds