Wall clock time and date at job start Tue Mar 31 2020 21:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47070 * 2 1 4 4 C 1.53001 * 109.47367 * 119.99858 * 2 1 3 5 5 H 1.09002 * 109.47029 * 300.00437 * 4 2 1 6 6 C 1.52992 * 109.47239 * 180.02562 * 4 2 1 7 7 N 1.46508 * 109.47265 * 185.00159 * 6 4 2 8 8 C 1.34776 * 120.00052 * 180.02562 * 7 6 4 9 9 O 1.21281 * 120.00122 * 359.97438 * 8 7 6 10 10 C 1.50693 * 119.99830 * 179.97438 * 8 7 6 11 11 H 1.08996 * 109.47200 * 304.99589 * 10 8 7 12 12 C 1.53000 * 109.47362 * 64.99600 * 10 8 7 13 13 O 1.42900 * 109.47338 * 184.99616 * 10 8 7 14 14 C 1.35895 * 116.99986 * 155.03923 * 13 10 8 15 15 C 1.38768 * 120.04733 * 5.44569 * 14 13 10 16 16 C 1.38128 * 119.99620 * 180.02562 * 15 14 13 17 17 C 1.38245 * 120.08381 * 0.27397 * 16 15 14 18 18 C 1.38476 * 120.08134 * 359.44723 * 17 16 15 19 19 F 1.35107 * 119.99959 * 180.27646 * 18 17 16 20 20 C 1.38384 * 120.00458 * 0.55228 * 18 17 16 21 21 N 1.46494 * 109.46765 * 60.00347 * 4 2 1 22 22 C 1.36942 * 120.00011 * 274.99792 * 21 4 2 23 23 H 1.08002 * 119.99826 * 0.02562 * 22 21 4 24 24 C 1.38809 * 120.00013 * 180.02562 * 22 21 4 25 25 N 1.31617 * 120.00109 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99888 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47201 * 59.99875 * 26 24 22 28 28 H 1.48499 * 109.46933 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46875 * 299.99908 * 26 24 22 30 30 H 1.08994 * 109.47486 * 300.00291 * 1 2 3 31 31 H 1.09004 * 109.47111 * 60.00692 * 1 2 3 32 32 H 1.09004 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47403 * 240.00066 * 2 1 3 34 34 H 1.08998 * 109.47431 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47093 * 300.00127 * 3 2 1 36 36 H 1.09002 * 109.46954 * 59.99791 * 3 2 1 37 37 H 1.09003 * 109.47441 * 64.99945 * 6 4 2 38 38 H 1.09001 * 109.47440 * 304.99804 * 6 4 2 39 39 H 0.96995 * 119.99146 * 359.97438 * 7 6 4 40 40 H 1.09001 * 109.47418 * 59.99961 * 12 10 8 41 41 H 1.08999 * 109.47771 * 180.02562 * 12 10 8 42 42 H 1.09002 * 109.47396 * 300.00098 * 12 10 8 43 43 H 1.08002 * 119.99778 * 359.97438 * 15 14 13 44 44 H 1.07998 * 119.95902 * 179.97438 * 16 15 14 45 45 H 1.08003 * 119.96248 * 179.70106 * 17 16 15 46 46 H 1.08011 * 120.04025 * 179.74720 * 20 18 17 47 47 H 0.96994 * 120.00297 * 95.00759 * 21 4 2 48 48 H 0.97006 * 120.00015 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5699 -0.7206 1.2495 7 7 4.0584 -1.5129 2.3810 8 6 5.3835 -1.6532 2.5832 9 8 6.1715 -1.1241 1.8283 10 6 5.8858 -2.4677 3.7474 11 1 5.4507 -2.0874 4.6715 12 6 5.4821 -3.9312 3.5580 13 8 7.3099 -2.3716 3.8166 14 6 7.8838 -2.5770 5.0313 15 6 7.1056 -2.9757 6.1089 16 6 7.6899 -3.1837 7.3431 17 6 9.0487 -2.9897 7.5081 18 6 9.8293 -2.5975 6.4337 19 9 11.1580 -2.4138 6.5955 20 6 9.2477 -2.3881 5.1956 21 7 1.5517 -2.1024 1.2492 22 6 0.3101 -2.3897 1.7504 23 1 -0.3092 -1.5980 2.1454 24 6 -0.1523 -3.6985 1.7508 25 7 0.6027 -4.6634 1.2700 26 14 -1.8462 -4.0904 2.4339 27 1 -2.8749 -3.3467 1.6632 28 1 -2.1004 -5.5490 2.3204 29 1 -1.9096 -3.6870 3.8617 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.9329 0.3032 1.3393 38 1 3.9337 -1.1547 0.3182 39 1 3.4280 -1.9357 2.9849 40 1 5.9172 -4.3116 2.6338 41 1 5.8450 -4.5203 4.4002 42 1 4.3958 -4.0046 3.5051 43 1 6.0431 -3.1225 5.9826 44 1 7.0837 -3.4935 8.1814 45 1 9.5027 -3.1482 8.4751 46 1 9.8554 -2.0782 4.3581 47 1 2.1079 -2.8134 0.8943 48 1 0.2797 -5.5781 1.2706 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482534275.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:57 Heat of formation + Delta-G solvation = -91.295705 kcal Electronic energy + Delta-G solvation = -29322.091633 eV Core-core repulsion = 25099.021669 eV Total energy + Delta-G solvation = -4223.069964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.15935 -40.74265 -39.31110 -37.61586 -37.01189 -34.05397 -33.19082 -32.37703 -30.77547 -30.34469 -29.93399 -28.03296 -26.18001 -24.92583 -23.78727 -23.23270 -22.59574 -21.63808 -20.21730 -19.32477 -18.81252 -17.80215 -17.07441 -16.61373 -16.52907 -16.09174 -15.92502 -15.65987 -15.45983 -15.15277 -14.52407 -14.47829 -14.06485 -13.98079 -13.68430 -13.49036 -13.34065 -13.18076 -12.97378 -12.62021 -12.48025 -12.20471 -12.08561 -12.04065 -11.80056 -11.67300 -11.31252 -11.16857 -11.06829 -11.01217 -10.88325 -10.69655 -10.35709 -10.17922 -10.03179 -9.63912 -9.57576 -9.16689 -8.99354 -8.75190 -8.53907 -7.11221 -5.89473 -3.19031 0.84694 1.01560 2.49402 2.72347 3.31610 3.33835 3.39869 3.41091 3.58842 4.10737 4.43053 4.47030 4.57072 4.70203 4.75494 4.79764 4.82686 5.03934 5.11002 5.26930 5.31080 5.46612 5.53801 5.57960 5.59878 5.67082 5.69330 5.80142 5.83280 5.93580 5.94713 6.03735 6.08978 6.12517 6.18737 6.32501 6.38358 6.42483 6.47482 6.56872 6.59764 6.81376 7.01059 7.08515 7.24429 7.59155 7.75819 8.27649 8.38781 9.39924 9.93855 10.30077 11.31978 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.002585 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.369838 B =10828.752660 C =12381.881003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.150 4.150 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.115 3.885 7 N -0.705 5.705 8 C 0.516 3.484 9 O -0.531 6.531 10 C 0.067 3.933 11 H 0.099 0.901 12 C -0.177 4.177 13 O -0.280 6.280 14 C 0.166 3.834 15 C -0.223 4.223 16 C -0.049 4.049 17 C -0.196 4.196 18 C 0.138 3.862 19 F -0.136 7.136 20 C -0.190 4.190 21 N -0.721 5.721 22 C -0.238 4.238 23 H 0.072 0.928 24 C -0.009 4.009 25 N -0.929 5.929 26 Si 0.902 3.098 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.411 0.589 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.144 0.856 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.649 4.700 9.831 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.208 4.208 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.009 4.009 7 N -0.358 5.358 8 C 0.299 3.701 9 O -0.407 6.407 10 C 0.008 3.992 11 H 0.117 0.883 12 C -0.235 4.235 13 O -0.192 6.192 14 C 0.119 3.881 15 C -0.242 4.242 16 C -0.067 4.067 17 C -0.215 4.215 18 C 0.118 3.882 19 F -0.114 7.114 20 C -0.209 4.209 21 N -0.363 5.363 22 C -0.369 4.369 23 H 0.090 0.910 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.733 3.267 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.248 0.752 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.157 0.843 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.162 0.838 47 H 0.219 0.781 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.172 5.107 9.171 16.073 hybrid contribution -1.081 -0.750 0.570 1.434 sum 11.091 4.357 9.741 15.391 Atomic orbital electron populations 1.21816 0.94876 1.03915 0.99032 1.21729 0.96954 0.94423 1.00005 1.21949 1.00498 0.97322 1.00983 1.20551 0.89119 0.88265 0.96126 0.92774 1.21794 0.95767 0.94797 0.88574 1.45844 1.05798 1.52937 1.31270 1.19898 0.83126 0.81168 0.85880 1.90716 1.55375 1.47896 1.46716 1.22313 0.79859 0.97872 0.99202 0.88336 1.22360 1.04109 0.92836 1.04185 1.86218 1.20979 1.85023 1.26977 1.18684 0.91810 0.92986 0.84585 1.21464 1.01137 1.08083 0.93482 1.20794 0.93747 0.95344 0.96792 1.21037 0.94602 1.07139 0.98764 1.17275 0.77530 0.99581 0.93788 1.91515 1.31035 1.92743 1.96126 1.20271 0.93524 1.09385 0.97765 1.42459 1.18120 1.01820 1.73885 1.19143 0.92853 0.92327 1.32614 0.90972 1.24719 0.98237 0.95892 1.01718 1.69644 1.36893 0.99915 1.51191 0.86355 0.84468 0.77084 0.78771 1.21259 1.21796 1.21309 0.94055 0.94973 0.89486 0.91849 0.93033 0.93524 0.93172 0.91387 0.91660 0.75239 0.90516 0.90847 0.88935 0.84260 0.84553 0.84671 0.83772 0.78077 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.26 37.15 0.31 -2.09 16 2 C -0.11 -1.77 2.69 -90.62 -0.24 -2.01 16 3 C -0.15 -2.01 8.84 37.16 0.33 -1.68 16 4 C 0.17 2.91 2.18 -67.94 -0.15 2.76 16 5 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 6 C 0.11 1.83 4.73 -4.04 -0.02 1.81 16 7 N -0.71 -10.73 5.35 -60.29 -0.32 -11.05 16 8 C 0.52 8.19 7.18 -10.99 -0.08 8.11 16 9 O -0.53 -10.41 16.51 -14.30 -0.24 -10.64 16 10 C 0.07 0.86 2.63 -27.89 -0.07 0.78 16 11 H 0.10 1.01 6.31 -51.93 -0.33 0.68 16 12 C -0.18 -2.09 9.12 37.16 0.34 -1.75 16 13 O -0.28 -3.98 9.34 -39.27 -0.37 -4.34 16 14 C 0.17 2.00 6.60 -39.23 -0.26 1.74 16 15 C -0.22 -2.18 8.24 -39.43 -0.32 -2.51 16 16 C -0.05 -0.40 10.04 -39.62 -0.40 -0.80 16 17 C -0.20 -1.75 10.02 -39.49 -0.40 -2.15 16 18 C 0.14 1.47 7.30 -39.44 -0.29 1.18 16 19 F -0.14 -1.50 17.27 2.25 0.04 -1.47 16 20 C -0.19 -2.21 9.97 -39.37 -0.39 -2.61 16 21 N -0.72 -15.27 4.44 -53.43 -0.24 -15.51 16 22 C -0.24 -5.68 7.57 -15.06 -0.11 -5.79 16 23 H 0.07 1.69 7.39 -52.49 -0.39 1.30 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -25.36 13.06 55.49 0.72 -24.63 16 26 Si 0.90 20.58 29.55 -169.99 -5.02 15.55 16 27 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.78 6.01 -51.93 -0.31 1.47 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.66 6.55 -51.93 -0.34 0.32 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.03 6.71 -51.93 -0.35 0.68 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.41 6.08 7.92 -40.82 -0.32 5.76 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.73 6.91 -51.93 -0.36 0.37 16 42 H 0.09 1.12 7.93 -51.93 -0.41 0.71 16 43 H 0.14 1.16 5.43 -52.49 -0.28 0.87 16 44 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 46 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 47 H 0.39 8.98 7.80 -40.82 -0.32 8.67 16 48 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -28.90 394.22 -8.53 -37.43 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -7.20 Total: 14.04 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -1.86 Total: -5.32 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.16 Total: -51.19 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.60 Total: -14.98 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.90 -8.53 -37.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482534275.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.866 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds