Wall clock time and date at job start Tue Mar 31 2020 21:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47070 * 2 1 4 4 C 1.53001 * 109.47367 * 119.99858 * 2 1 3 5 5 H 1.09002 * 109.47029 * 300.00437 * 4 2 1 6 6 C 1.52992 * 109.47239 * 180.02562 * 4 2 1 7 7 N 1.46508 * 109.47265 * 185.00159 * 6 4 2 8 8 C 1.34776 * 120.00052 * 180.02562 * 7 6 4 9 9 O 1.21281 * 120.00122 * 359.97438 * 8 7 6 10 10 C 1.50693 * 119.99830 * 179.97438 * 8 7 6 11 11 H 1.08996 * 109.47200 * 304.99589 * 10 8 7 12 12 C 1.53000 * 109.47362 * 64.99600 * 10 8 7 13 13 O 1.42900 * 109.47338 * 184.99616 * 10 8 7 14 14 C 1.35895 * 116.99986 * 155.03923 * 13 10 8 15 15 C 1.38768 * 120.04733 * 5.44569 * 14 13 10 16 16 C 1.38128 * 119.99620 * 180.02562 * 15 14 13 17 17 C 1.38245 * 120.08381 * 0.27397 * 16 15 14 18 18 C 1.38476 * 120.08134 * 359.44723 * 17 16 15 19 19 F 1.35107 * 119.99959 * 180.27646 * 18 17 16 20 20 C 1.38384 * 120.00458 * 0.55228 * 18 17 16 21 21 N 1.46494 * 109.46765 * 60.00347 * 4 2 1 22 22 C 1.36942 * 120.00011 * 274.99792 * 21 4 2 23 23 H 1.08002 * 119.99826 * 0.02562 * 22 21 4 24 24 C 1.38809 * 120.00013 * 180.02562 * 22 21 4 25 25 N 1.31617 * 120.00109 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99888 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47201 * 59.99875 * 26 24 22 28 28 H 1.48499 * 109.46933 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46875 * 299.99908 * 26 24 22 30 30 H 1.08994 * 109.47486 * 300.00291 * 1 2 3 31 31 H 1.09004 * 109.47111 * 60.00692 * 1 2 3 32 32 H 1.09004 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47403 * 240.00066 * 2 1 3 34 34 H 1.08998 * 109.47431 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47093 * 300.00127 * 3 2 1 36 36 H 1.09002 * 109.46954 * 59.99791 * 3 2 1 37 37 H 1.09003 * 109.47441 * 64.99945 * 6 4 2 38 38 H 1.09001 * 109.47440 * 304.99804 * 6 4 2 39 39 H 0.96995 * 119.99146 * 359.97438 * 7 6 4 40 40 H 1.09001 * 109.47418 * 59.99961 * 12 10 8 41 41 H 1.08999 * 109.47771 * 180.02562 * 12 10 8 42 42 H 1.09002 * 109.47396 * 300.00098 * 12 10 8 43 43 H 1.08002 * 119.99778 * 359.97438 * 15 14 13 44 44 H 1.07998 * 119.95902 * 179.97438 * 16 15 14 45 45 H 1.08003 * 119.96248 * 179.70106 * 17 16 15 46 46 H 1.08011 * 120.04025 * 179.74720 * 20 18 17 47 47 H 0.96994 * 120.00297 * 95.00759 * 21 4 2 48 48 H 0.97006 * 120.00015 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5699 -0.7206 1.2495 7 7 4.0584 -1.5129 2.3810 8 6 5.3835 -1.6532 2.5832 9 8 6.1715 -1.1241 1.8283 10 6 5.8858 -2.4677 3.7474 11 1 5.4507 -2.0874 4.6715 12 6 5.4821 -3.9312 3.5580 13 8 7.3099 -2.3716 3.8166 14 6 7.8838 -2.5770 5.0313 15 6 7.1056 -2.9757 6.1089 16 6 7.6899 -3.1837 7.3431 17 6 9.0487 -2.9897 7.5081 18 6 9.8293 -2.5975 6.4337 19 9 11.1580 -2.4138 6.5955 20 6 9.2477 -2.3881 5.1956 21 7 1.5517 -2.1024 1.2492 22 6 0.3101 -2.3897 1.7504 23 1 -0.3092 -1.5980 2.1454 24 6 -0.1523 -3.6985 1.7508 25 7 0.6027 -4.6634 1.2700 26 14 -1.8462 -4.0904 2.4339 27 1 -2.8749 -3.3467 1.6632 28 1 -2.1004 -5.5490 2.3204 29 1 -1.9096 -3.6870 3.8617 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.9329 0.3032 1.3393 38 1 3.9337 -1.1547 0.3182 39 1 3.4280 -1.9357 2.9849 40 1 5.9172 -4.3116 2.6338 41 1 5.8450 -4.5203 4.4002 42 1 4.3958 -4.0046 3.5051 43 1 6.0431 -3.1225 5.9826 44 1 7.0837 -3.4935 8.1814 45 1 9.5027 -3.1482 8.4751 46 1 9.8554 -2.0782 4.3581 47 1 2.1079 -2.8134 0.8943 48 1 0.2797 -5.5781 1.2706 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482534275.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:56 Heat of formation + Delta-G solvation = -107.436215 kcal Electronic energy + Delta-G solvation = -29322.791538 eV Core-core repulsion = 25099.021669 eV Total energy + Delta-G solvation = -4223.769869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.98533 -41.74114 -40.46903 -38.84263 -38.12112 -35.40820 -34.90075 -33.37532 -32.11673 -31.48508 -30.74828 -29.45800 -27.46623 -26.15008 -25.28059 -24.03254 -23.71863 -22.84951 -21.46402 -20.66651 -19.69441 -19.27516 -18.49236 -17.54430 -17.37772 -17.11544 -16.89386 -16.84124 -16.68357 -16.37539 -15.84651 -15.68479 -15.48318 -15.05035 -14.87491 -14.74309 -14.63875 -14.40353 -13.97394 -13.80776 -13.53506 -13.41941 -13.32886 -12.94555 -12.89107 -12.78309 -12.69972 -12.61590 -12.46328 -12.26154 -12.15897 -12.01249 -11.99119 -11.74005 -11.42939 -11.26656 -10.92971 -10.74571 -10.08072 -9.94769 -9.36092 -8.92705 -7.83860 -5.10800 0.07647 0.24521 1.44527 1.50519 1.53403 1.55479 1.59787 2.48896 2.55638 2.62864 3.32996 3.46068 3.51640 3.69938 3.78834 3.82247 3.88826 3.94696 3.98207 4.06478 4.21282 4.30866 4.33024 4.39057 4.46782 4.60631 4.64715 4.66944 4.78595 4.93832 4.98263 4.99214 5.05363 5.08104 5.12001 5.16876 5.20494 5.27539 5.31957 5.32158 5.48984 5.63561 5.67132 5.67550 5.78585 6.20206 6.35766 6.51100 7.13043 7.44607 8.14987 8.40776 9.38330 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.002585 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.369838 B =10828.752660 C =12381.881003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.173 3.827 5 H 0.061 0.939 6 C 0.122 3.878 7 N -0.699 5.699 8 C 0.513 3.487 9 O -0.573 6.573 10 C 0.074 3.926 11 H 0.130 0.870 12 C -0.170 4.170 13 O -0.307 6.307 14 C 0.143 3.857 15 C -0.221 4.221 16 C -0.041 4.041 17 C -0.188 4.188 18 C 0.124 3.876 19 F -0.142 7.142 20 C -0.208 4.208 21 N -0.726 5.726 22 C -0.214 4.214 23 H 0.079 0.921 24 C -0.068 4.068 25 N -0.965 5.965 26 Si 0.955 3.045 27 H -0.287 1.287 28 H -0.306 1.306 29 H -0.277 1.277 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.415 0.585 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.157 0.843 44 H 0.173 0.827 45 H 0.160 0.840 46 H 0.134 0.866 47 H 0.373 0.627 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.032 5.768 12.154 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.065 3.935 5 H 0.079 0.921 6 C -0.002 4.002 7 N -0.352 5.352 8 C 0.298 3.702 9 O -0.453 6.453 10 C 0.015 3.985 11 H 0.147 0.853 12 C -0.227 4.227 13 O -0.220 6.220 14 C 0.097 3.903 15 C -0.239 4.239 16 C -0.059 4.059 17 C -0.207 4.207 18 C 0.104 3.896 19 F -0.121 7.121 20 C -0.227 4.227 21 N -0.366 5.366 22 C -0.346 4.346 23 H 0.097 0.903 24 C -0.260 4.260 25 N -0.616 5.616 26 Si 0.786 3.214 27 H -0.213 1.213 28 H -0.233 1.233 29 H -0.203 1.203 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.252 0.748 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.174 0.826 44 H 0.190 0.810 45 H 0.178 0.822 46 H 0.152 0.848 47 H 0.205 0.795 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.542 6.224 11.518 17.453 hybrid contribution -0.840 -0.989 -0.147 1.305 sum 10.702 5.235 11.371 16.469 Atomic orbital electron populations 1.21728 0.95376 1.01777 1.00285 1.21637 0.96409 0.96255 0.98573 1.21859 1.00853 0.95034 1.02184 1.20672 0.89781 0.86229 0.96863 0.92068 1.21675 0.94721 0.95541 0.88289 1.45799 1.05875 1.52578 1.30914 1.20489 0.82746 0.80667 0.86255 1.90690 1.56305 1.49787 1.48468 1.22293 0.79792 0.97666 0.98785 0.85313 1.22306 1.03692 0.92498 1.04233 1.86173 1.21460 1.85778 1.28600 1.18864 0.92075 0.94678 0.84643 1.21711 1.01790 1.07146 0.93266 1.21219 0.93705 0.93777 0.97149 1.21395 0.94862 1.05388 0.99062 1.17462 0.77522 1.00470 0.94112 1.91496 1.31536 1.92913 1.96132 1.20339 0.93827 1.10370 0.98211 1.42559 1.17276 1.03258 1.73509 1.19402 0.93260 0.92000 1.29924 0.90325 1.25292 1.00924 0.96255 1.03538 1.69785 1.38253 0.99674 1.53851 0.85492 0.81492 0.75817 0.78598 1.21334 1.23270 1.20321 0.93296 0.93273 0.93156 0.93271 0.92427 0.92260 0.92062 0.89956 0.93273 0.74787 0.92429 0.88557 0.89228 0.82595 0.80978 0.82202 0.84799 0.79481 0.94470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 8.26 71.98 0.59 -3.81 16 2 C -0.11 -3.32 2.69 -10.79 -0.03 -3.35 16 3 C -0.14 -3.42 8.84 71.98 0.64 -2.79 16 4 C 0.17 5.75 2.18 44.99 0.10 5.85 16 5 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 6 C 0.12 3.80 4.73 86.38 0.41 4.21 16 7 N -0.70 -20.89 5.35 -463.06 -2.48 -23.37 16 8 C 0.51 16.26 7.18 87.65 0.63 16.89 16 9 O -0.57 -22.90 16.51 15.96 0.26 -22.64 16 10 C 0.07 1.82 2.63 29.85 0.08 1.90 16 11 H 0.13 2.34 6.31 -2.39 -0.02 2.32 16 12 C -0.17 -3.87 9.12 71.98 0.66 -3.21 16 13 O -0.31 -8.75 9.34 -73.37 -0.69 -9.44 16 14 C 0.14 3.36 6.60 22.50 0.15 3.50 16 15 C -0.22 -3.74 8.24 22.37 0.18 -3.56 16 16 C -0.04 -0.53 10.04 22.25 0.22 -0.31 16 17 C -0.19 -2.83 10.02 22.33 0.22 -2.61 16 18 C 0.12 2.54 7.30 22.36 0.16 2.70 16 19 F -0.14 -3.10 17.27 44.97 0.78 -2.33 16 20 C -0.21 -4.91 9.97 22.41 0.22 -4.68 16 21 N -0.73 -30.59 4.44 -322.96 -1.43 -32.02 16 22 C -0.21 -10.07 7.57 84.03 0.64 -9.43 16 23 H 0.08 3.57 7.39 -2.91 -0.02 3.55 16 24 C -0.07 -3.46 5.50 84.86 0.47 -2.99 16 25 N -0.96 -53.60 13.06 21.65 0.28 -53.32 16 26 Si 0.95 42.32 29.55 68.60 2.03 44.35 16 27 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.31 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 2.02 6.01 -2.38 -0.01 2.01 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.33 6.55 -2.39 -0.02 1.32 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 2.37 6.71 -2.39 -0.02 2.35 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.41 11.88 7.92 -92.71 -0.73 11.14 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 1.73 6.91 -2.39 -0.02 1.72 16 42 H 0.09 2.10 7.93 -2.39 -0.02 2.08 16 43 H 0.16 2.05 5.43 -2.91 -0.02 2.03 16 44 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 45 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 46 H 0.13 3.26 8.06 -2.90 -0.02 3.23 16 47 H 0.37 17.66 7.80 -92.71 -0.72 16.93 16 48 H 0.25 13.68 8.31 -92.70 -0.77 12.91 16 Total: -1.00 -63.88 394.22 3.63 -60.25 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -0.47 Total: 40.21 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.34 Total: -1.70 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.63 Total: -108.71 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.42 Total: -32.08 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -63.88 3.63 -60.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482534275.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.188 kcal (2) G-P(sol) polarization free energy of solvation -63.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds