Wall clock time and date at job start Tue Mar 31 2020 21:19:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52996 * 109.47043 * 2 1
4 4 C 1.53002 * 109.46816 * 119.99444 * 2 1 3
5 5 H 1.09002 * 109.47317 * 300.00507 * 4 2 1
6 6 C 1.52997 * 109.47047 * 180.02562 * 4 2 1
7 7 N 1.46503 * 109.47182 * 185.00395 * 6 4 2
8 8 C 1.34773 * 120.00191 * 180.02562 * 7 6 4
9 9 O 1.21286 * 120.00029 * 359.97438 * 8 7 6
10 10 C 1.50701 * 120.00364 * 179.97438 * 8 7 6
11 11 H 1.08995 * 109.47072 * 59.99464 * 10 8 7
12 12 C 1.53002 * 109.46861 * 299.99777 * 10 8 7
13 13 O 1.42901 * 109.47615 * 180.02562 * 10 8 7
14 14 C 1.35896 * 117.00239 * 204.81865 * 13 10 8
15 15 C 1.38769 * 120.03714 * 354.61912 * 14 13 10
16 16 C 1.38138 * 119.98769 * 180.02562 * 15 14 13
17 17 C 1.38251 * 120.08358 * 0.02562 * 16 15 14
18 18 C 1.38477 * 120.08032 * 359.97438 * 17 16 15
19 19 F 1.35102 * 119.99067 * 179.72114 * 18 17 16
20 20 C 1.38381 * 120.00850 * 0.02562 * 18 17 16
21 21 N 1.46504 * 109.46963 * 60.00205 * 4 2 1
22 22 C 1.36937 * 119.99891 * 274.99741 * 21 4 2
23 23 H 1.07991 * 120.00398 * 359.97438 * 22 21 4
24 24 C 1.38814 * 119.99711 * 180.02562 * 22 21 4
25 25 N 1.31623 * 120.00058 * 359.97438 * 24 22 21
26 26 Si 1.86802 * 120.00152 * 180.02562 * 24 22 21
27 27 H 1.48499 * 109.46988 * 59.99904 * 26 24 22
28 28 H 1.48493 * 109.47093 * 180.02562 * 26 24 22
29 29 H 1.48497 * 109.46878 * 300.00098 * 26 24 22
30 30 H 1.08993 * 109.47800 * 300.00297 * 1 2 3
31 31 H 1.09001 * 109.47041 * 60.00936 * 1 2 3
32 32 H 1.09002 * 109.47090 * 179.97438 * 1 2 3
33 33 H 1.08990 * 109.47265 * 239.99181 * 2 1 3
34 34 H 1.08997 * 109.47112 * 179.97438 * 3 2 1
35 35 H 1.09002 * 109.47122 * 299.99734 * 3 2 1
36 36 H 1.09002 * 109.47104 * 59.99485 * 3 2 1
37 37 H 1.09000 * 109.47425 * 65.00395 * 6 4 2
38 38 H 1.09001 * 109.47089 * 304.99922 * 6 4 2
39 39 H 0.97002 * 119.99675 * 359.97438 * 7 6 4
40 40 H 1.08993 * 109.47293 * 300.00175 * 12 10 8
41 41 H 1.09007 * 109.46720 * 60.00297 * 12 10 8
42 42 H 1.09003 * 109.47268 * 179.97438 * 12 10 8
43 43 H 1.08000 * 120.00804 * 0.04590 * 15 14 13
44 44 H 1.08004 * 119.95485 * 180.02562 * 16 15 14
45 45 H 1.07997 * 119.95863 * 180.02562 * 17 16 15
46 46 H 1.07995 * 120.03848 * 179.97438 * 20 18 17
47 47 H 0.97005 * 119.99960 * 94.99958 * 21 4 2
48 48 H 0.96998 * 119.99765 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0399 -0.7211 1.2493
5 1 1.6765 -0.2073 2.1393
6 6 3.5699 -0.7206 1.2497
7 7 4.0582 -1.5128 2.3812
8 6 5.3832 -1.6532 2.5836
9 8 6.1714 -1.1241 1.8287
10 6 5.8856 -2.4677 3.7478
11 1 5.5229 -3.4916 3.6583
12 6 5.3747 -1.8581 5.0548
13 8 7.3147 -2.4663 3.7488
14 6 7.9322 -3.5124 4.3580
15 6 7.1823 -4.4609 5.0390
16 6 7.8112 -5.5235 5.6583
17 6 9.1873 -5.6434 5.6012
18 6 9.9386 -4.6987 4.9224
19 9 11.2838 -4.8145 4.8725
20 6 9.3124 -3.6328 4.3008
21 7 1.5515 -2.1024 1.2494
22 6 0.3100 -2.3896 1.7506
23 1 -0.3091 -1.5980 2.1462
24 6 -0.1525 -3.6984 1.7511
25 7 0.6021 -4.6633 1.2694
26 14 -1.8465 -4.0902 2.4341
27 1 -2.8751 -3.3466 1.6633
28 1 -2.1007 -5.5489 2.3207
29 1 -1.9100 -3.6867 3.8617
30 1 -0.3634 0.5138 0.8899
31 1 -0.3633 0.5137 -0.8901
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8933 -0.5139 -0.8898
34 1 3.1299 1.4425 0.0005
35 1 1.6766 1.9563 -0.8900
36 1 1.6765 1.9563 0.8900
37 1 3.9329 0.3032 1.3395
38 1 3.9336 -1.1548 0.3184
39 1 3.4278 -1.9357 2.9851
40 1 5.7373 -0.8341 5.1443
41 1 4.2846 -1.8588 5.0543
42 1 5.7377 -2.4474 5.8969
43 1 6.1073 -4.3685 5.0845
44 1 7.2270 -6.2617 6.1879
45 1 9.6768 -6.4752 6.0857
46 1 9.8979 -2.8955 3.7717
47 1 2.1077 -2.8135 0.8944
48 1 0.2791 -5.5779 1.2701
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001482534284.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:19:09
Heat of formation + Delta-G solvation = -91.204642 kcal
Electronic energy + Delta-G solvation = -29329.638941 eV
Core-core repulsion = 25106.572926 eV
Total energy + Delta-G solvation = -4223.066015 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-49.13321 -40.73408 -39.30364 -37.60398 -37.00382 -34.07403 -33.18981 -32.40484
-30.76623 -30.33583 -29.91644 -28.02958 -26.17989 -24.97472 -23.78932 -23.20636
-22.58003 -21.64891 -20.19827 -19.33554 -18.80582 -17.78042 -17.08074 -16.59069
-16.50712 -16.10837 -15.91429 -15.71572 -15.35616 -15.16855 -14.61158 -14.41312
-14.01480 -13.97443 -13.72276 -13.52297 -13.37626 -13.16327 -12.86478 -12.74597
-12.57320 -12.17818 -12.09815 -12.07375 -11.81698 -11.67261 -11.30794 -11.16753
-11.07083 -11.00707 -10.88234 -10.69697 -10.35632 -10.17900 -10.03125 -9.64049
-9.57736 -9.13552 -8.99304 -8.74961 -8.51715 -7.11221 -5.89342 -3.19001
0.87966 1.04502 2.49962 2.72916 3.33902 3.34915 3.39923 3.41120
3.58420 4.13164 4.45337 4.47315 4.59494 4.70764 4.72764 4.78056
4.85875 5.04353 5.14139 5.26805 5.30775 5.42099 5.44848 5.46787
5.58178 5.69349 5.70402 5.82204 5.83274 5.87243 5.93957 5.98603
6.07703 6.12456 6.18807 6.32532 6.38432 6.44895 6.47516 6.56920
6.59901 6.81539 7.01197 7.09509 7.24569 7.59149 7.75893 8.27713
8.38861 9.39896 9.93934 10.29994 11.32165
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.012243 B = 0.002690 C = 0.002300
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2286.409488 B =10408.186224 C =12168.671381
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.109 4.109
3 C -0.149 4.149
4 C 0.170 3.830
5 H 0.055 0.945
6 C 0.115 3.885
7 N -0.705 5.705
8 C 0.516 3.484
9 O -0.531 6.531
10 C 0.065 3.935
11 H 0.105 0.895
12 C -0.176 4.176
13 O -0.280 6.280
14 C 0.165 3.835
15 C -0.222 4.222
16 C -0.048 4.048
17 C -0.196 4.196
18 C 0.137 3.863
19 F -0.136 7.136
20 C -0.190 4.190
21 N -0.722 5.722
22 C -0.239 4.239
23 H 0.073 0.927
24 C -0.009 4.009
25 N -0.929 5.929
26 Si 0.903 3.097
27 H -0.286 1.286
28 H -0.292 1.292
29 H -0.286 1.286
30 H 0.040 0.960
31 H 0.031 0.969
32 H 0.086 0.914
33 H 0.063 0.937
34 H 0.051 0.949
35 H 0.046 0.954
36 H 0.049 0.951
37 H 0.068 0.932
38 H 0.065 0.935
39 H 0.411 0.589
40 H 0.074 0.926
41 H 0.085 0.915
42 H 0.074 0.926
43 H 0.140 0.860
44 H 0.137 0.863
45 H 0.136 0.864
46 H 0.144 0.856
47 H 0.385 0.615
48 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.775 2.889 8.589 14.859
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.131 4.131
3 C -0.207 4.207
4 C 0.059 3.941
5 H 0.072 0.928
6 C -0.009 4.009
7 N -0.358 5.358
8 C 0.300 3.700
9 O -0.407 6.407
10 C 0.005 3.995
11 H 0.122 0.878
12 C -0.234 4.234
13 O -0.192 6.192
14 C 0.119 3.881
15 C -0.240 4.240
16 C -0.066 4.066
17 C -0.215 4.215
18 C 0.118 3.882
19 F -0.114 7.114
20 C -0.209 4.209
21 N -0.363 5.363
22 C -0.370 4.370
23 H 0.091 0.909
24 C -0.206 4.206
25 N -0.577 5.577
26 Si 0.734 3.266
27 H -0.213 1.213
28 H -0.218 1.218
29 H -0.213 1.213
30 H 0.060 0.940
31 H 0.050 0.950
32 H 0.105 0.895
33 H 0.081 0.919
34 H 0.070 0.930
35 H 0.065 0.935
36 H 0.068 0.932
37 H 0.087 0.913
38 H 0.083 0.917
39 H 0.248 0.752
40 H 0.093 0.907
41 H 0.104 0.896
42 H 0.093 0.907
43 H 0.158 0.842
44 H 0.155 0.845
45 H 0.153 0.847
46 H 0.162 0.838
47 H 0.219 0.781
48 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 12.292 3.418 8.018 15.069
hybrid contribution -1.081 -0.891 0.460 1.475
sum 11.211 2.527 8.478 14.281
Atomic orbital electron populations
1.21816 0.94876 1.03916 0.99033 1.21726 0.96957 0.94431 1.00005
1.21946 1.00500 0.97311 1.00985 1.20555 0.89120 0.88248 0.96133
0.92753 1.21795 0.95768 0.94821 0.88555 1.45848 1.05796 1.52983
1.31206 1.19884 0.83133 0.81529 0.85483 1.90717 1.55371 1.47826
1.46810 1.22309 0.79641 1.01635 0.95904 0.87757 1.22357 1.02819
1.02825 0.95401 1.86202 1.19750 1.41020 1.72242 1.18671 0.91464
0.86850 0.91155 1.21475 1.01101 0.97405 1.04058 1.20810 0.93428
0.96363 0.96031 1.21042 0.94626 1.01023 1.04774 1.17270 0.76972
0.95529 0.98452 1.91512 1.29438 1.95778 1.94706 1.20250 0.92756
1.00994 1.06909 1.42467 1.18125 1.01830 1.73891 1.19143 0.92859
0.92336 1.32616 0.90949 1.24728 0.98259 0.95890 1.01718 1.69648
1.36930 0.99927 1.51167 0.86346 0.84432 0.77089 0.78765 1.21253
1.21789 1.21301 0.94049 0.94971 0.89491 0.91855 0.93029 0.93520
0.93170 0.91347 0.91693 0.75226 0.90686 0.89605 0.90674 0.84229
0.84503 0.84656 0.83801 0.78098 0.93400
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.40 8.26 37.16 0.31 -2.09 16
2 C -0.11 -1.77 2.69 -90.62 -0.24 -2.02 16
3 C -0.15 -2.01 8.84 37.16 0.33 -1.68 16
4 C 0.17 2.92 2.18 -67.93 -0.15 2.77 16
5 H 0.05 0.94 8.08 -51.93 -0.42 0.53 16
6 C 0.11 1.83 4.73 -4.04 -0.02 1.81 16
7 N -0.70 -10.75 5.28 -60.29 -0.32 -11.07 16
8 C 0.52 8.21 7.23 -10.99 -0.08 8.13 16
9 O -0.53 -10.42 16.50 -14.36 -0.24 -10.66 16
10 C 0.06 0.83 2.65 -27.88 -0.07 0.75 16
11 H 0.10 1.20 6.32 -51.93 -0.33 0.88 16
12 C -0.18 -1.76 9.06 37.16 0.34 -1.42 16
13 O -0.28 -3.99 9.33 -39.32 -0.37 -4.35 16
14 C 0.17 2.04 6.60 -39.23 -0.26 1.78 16
15 C -0.22 -2.29 8.24 -39.42 -0.32 -2.61 16
16 C -0.05 -0.43 10.04 -39.61 -0.40 -0.83 16
17 C -0.20 -1.84 10.02 -39.49 -0.40 -2.23 16
18 C 0.14 1.52 7.30 -39.44 -0.29 1.23 16
19 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16
20 C -0.19 -2.26 9.97 -39.37 -0.39 -2.66 16
21 N -0.72 -15.38 4.44 -53.42 -0.24 -15.62 16
22 C -0.24 -5.71 7.57 -15.06 -0.11 -5.82 16
23 H 0.07 1.70 7.40 -52.49 -0.39 1.31 16
24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16
25 N -0.93 -25.55 13.06 55.49 0.72 -24.82 16
26 Si 0.90 20.62 29.55 -169.99 -5.02 15.60 16
27 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16
28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
29 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16
30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
32 H 0.09 1.79 6.01 -51.93 -0.31 1.48 16
33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16
34 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16
35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
37 H 0.07 1.03 6.71 -51.93 -0.35 0.68 16
38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
39 H 0.41 6.10 7.56 -40.82 -0.31 5.80 16
40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
41 H 0.09 0.78 7.56 -51.92 -0.39 0.38 16
42 H 0.07 0.64 6.90 -51.93 -0.36 0.28 16
43 H 0.14 1.26 5.42 -52.49 -0.28 0.97 16
44 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16
45 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16
46 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16
47 H 0.38 9.07 7.80 -40.82 -0.32 8.75 16
48 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16
LS Contribution 393.39 15.07 5.93 5.93
Total: -1.00 -29.16 393.39 -8.51 -37.68
By element:
Atomic # 1 Polarization: 21.21 SS G_CDS: -7.16 Total: 14.05 kcal
Atomic # 6 Polarization: -3.36 SS G_CDS: -1.86 Total: -5.22 kcal
Atomic # 7 Polarization: -51.68 SS G_CDS: 0.17 Total: -51.51 kcal
Atomic # 8 Polarization: -14.41 SS G_CDS: -0.60 Total: -15.01 kcal
Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal
Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -29.16 -8.51 -37.68 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001482534284.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.529 kcal
(2) G-P(sol) polarization free energy of solvation -29.164 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.693 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.205 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds