Wall clock time and date at job start Tue Mar 31 2020 21:19:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52996 * 109.47043 * 2 1
4 4 C 1.53002 * 109.46816 * 119.99444 * 2 1 3
5 5 H 1.09002 * 109.47317 * 300.00507 * 4 2 1
6 6 C 1.52997 * 109.47047 * 180.02562 * 4 2 1
7 7 N 1.46503 * 109.47182 * 185.00395 * 6 4 2
8 8 C 1.34773 * 120.00191 * 180.02562 * 7 6 4
9 9 O 1.21286 * 120.00029 * 359.97438 * 8 7 6
10 10 C 1.50701 * 120.00364 * 179.97438 * 8 7 6
11 11 H 1.08995 * 109.47072 * 59.99464 * 10 8 7
12 12 C 1.53002 * 109.46861 * 299.99777 * 10 8 7
13 13 O 1.42901 * 109.47615 * 180.02562 * 10 8 7
14 14 C 1.35896 * 117.00239 * 204.81865 * 13 10 8
15 15 C 1.38769 * 120.03714 * 354.61912 * 14 13 10
16 16 C 1.38138 * 119.98769 * 180.02562 * 15 14 13
17 17 C 1.38251 * 120.08358 * 0.02562 * 16 15 14
18 18 C 1.38477 * 120.08032 * 359.97438 * 17 16 15
19 19 F 1.35102 * 119.99067 * 179.72114 * 18 17 16
20 20 C 1.38381 * 120.00850 * 0.02562 * 18 17 16
21 21 N 1.46504 * 109.46963 * 60.00205 * 4 2 1
22 22 C 1.36937 * 119.99891 * 274.99741 * 21 4 2
23 23 H 1.07991 * 120.00398 * 359.97438 * 22 21 4
24 24 C 1.38814 * 119.99711 * 180.02562 * 22 21 4
25 25 N 1.31623 * 120.00058 * 359.97438 * 24 22 21
26 26 Si 1.86802 * 120.00152 * 180.02562 * 24 22 21
27 27 H 1.48499 * 109.46988 * 59.99904 * 26 24 22
28 28 H 1.48493 * 109.47093 * 180.02562 * 26 24 22
29 29 H 1.48497 * 109.46878 * 300.00098 * 26 24 22
30 30 H 1.08993 * 109.47800 * 300.00297 * 1 2 3
31 31 H 1.09001 * 109.47041 * 60.00936 * 1 2 3
32 32 H 1.09002 * 109.47090 * 179.97438 * 1 2 3
33 33 H 1.08990 * 109.47265 * 239.99181 * 2 1 3
34 34 H 1.08997 * 109.47112 * 179.97438 * 3 2 1
35 35 H 1.09002 * 109.47122 * 299.99734 * 3 2 1
36 36 H 1.09002 * 109.47104 * 59.99485 * 3 2 1
37 37 H 1.09000 * 109.47425 * 65.00395 * 6 4 2
38 38 H 1.09001 * 109.47089 * 304.99922 * 6 4 2
39 39 H 0.97002 * 119.99675 * 359.97438 * 7 6 4
40 40 H 1.08993 * 109.47293 * 300.00175 * 12 10 8
41 41 H 1.09007 * 109.46720 * 60.00297 * 12 10 8
42 42 H 1.09003 * 109.47268 * 179.97438 * 12 10 8
43 43 H 1.08000 * 120.00804 * 0.04590 * 15 14 13
44 44 H 1.08004 * 119.95485 * 180.02562 * 16 15 14
45 45 H 1.07997 * 119.95863 * 180.02562 * 17 16 15
46 46 H 1.07995 * 120.03848 * 179.97438 * 20 18 17
47 47 H 0.97005 * 119.99960 * 94.99958 * 21 4 2
48 48 H 0.96998 * 119.99765 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0399 -0.7211 1.2493
5 1 1.6765 -0.2073 2.1393
6 6 3.5699 -0.7206 1.2497
7 7 4.0582 -1.5128 2.3812
8 6 5.3832 -1.6532 2.5836
9 8 6.1714 -1.1241 1.8287
10 6 5.8856 -2.4677 3.7478
11 1 5.5229 -3.4916 3.6583
12 6 5.3747 -1.8581 5.0548
13 8 7.3147 -2.4663 3.7488
14 6 7.9322 -3.5124 4.3580
15 6 7.1823 -4.4609 5.0390
16 6 7.8112 -5.5235 5.6583
17 6 9.1873 -5.6434 5.6012
18 6 9.9386 -4.6987 4.9224
19 9 11.2838 -4.8145 4.8725
20 6 9.3124 -3.6328 4.3008
21 7 1.5515 -2.1024 1.2494
22 6 0.3100 -2.3896 1.7506
23 1 -0.3091 -1.5980 2.1462
24 6 -0.1525 -3.6984 1.7511
25 7 0.6021 -4.6633 1.2694
26 14 -1.8465 -4.0902 2.4341
27 1 -2.8751 -3.3466 1.6633
28 1 -2.1007 -5.5489 2.3207
29 1 -1.9100 -3.6867 3.8617
30 1 -0.3634 0.5138 0.8899
31 1 -0.3633 0.5137 -0.8901
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8933 -0.5139 -0.8898
34 1 3.1299 1.4425 0.0005
35 1 1.6766 1.9563 -0.8900
36 1 1.6765 1.9563 0.8900
37 1 3.9329 0.3032 1.3395
38 1 3.9336 -1.1548 0.3184
39 1 3.4278 -1.9357 2.9851
40 1 5.7373 -0.8341 5.1443
41 1 4.2846 -1.8588 5.0543
42 1 5.7377 -2.4474 5.8969
43 1 6.1073 -4.3685 5.0845
44 1 7.2270 -6.2617 6.1879
45 1 9.6768 -6.4752 6.0857
46 1 9.8979 -2.8955 3.7717
47 1 2.1077 -2.8135 0.8944
48 1 0.2791 -5.5779 1.2701
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001482534284.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:19:08
Heat of formation + Delta-G solvation = -107.498471 kcal
Electronic energy + Delta-G solvation = -29330.345495 eV
Core-core repulsion = 25106.572926 eV
Total energy + Delta-G solvation = -4223.772569 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-49.99301 -41.74131 -40.47235 -38.84418 -38.12310 -35.42300 -34.90431 -33.37491
-32.11881 -31.49000 -30.75635 -29.44168 -27.46438 -26.14440 -25.28483 -24.04557
-23.72227 -22.86618 -21.44615 -20.68244 -19.70980 -19.25872 -18.50702 -17.53231
-17.39427 -17.14962 -16.98039 -16.76772 -16.64263 -16.40201 -15.92727 -15.59138
-15.49534 -15.03645 -14.90559 -14.77942 -14.71216 -14.21861 -14.04136 -13.83229
-13.55403 -13.43325 -13.30516 -12.92876 -12.88893 -12.78291 -12.70208 -12.61942
-12.46517 -12.26761 -12.15259 -12.01071 -11.99762 -11.74235 -11.43080 -11.26782
-10.93243 -10.74818 -10.08113 -9.95605 -9.36823 -8.93391 -7.84403 -5.11480
0.06693 0.23516 1.46715 1.48987 1.53429 1.55452 1.59873 2.48413
2.54743 2.62679 3.32002 3.45756 3.51626 3.71087 3.78286 3.82607
3.89617 3.94309 3.97730 4.05731 4.20593 4.30788 4.32946 4.38141
4.46586 4.62511 4.65522 4.67308 4.78335 4.93901 4.97018 4.99161
5.04128 5.07762 5.10364 5.16873 5.19225 5.27578 5.31432 5.32050
5.48928 5.63260 5.66159 5.67341 5.78546 6.19176 6.35271 6.50856
7.12992 7.43915 8.14340 8.39948 9.37947
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.012243 B = 0.002690 C = 0.002300
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2286.409488 B =10408.186224 C =12168.671381
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.107 4.107
3 C -0.141 4.141
4 C 0.173 3.827
5 H 0.062 0.938
6 C 0.122 3.878
7 N -0.699 5.699
8 C 0.513 3.487
9 O -0.574 6.574
10 C 0.068 3.932
11 H 0.117 0.883
12 C -0.169 4.169
13 O -0.306 6.306
14 C 0.144 3.856
15 C -0.222 4.222
16 C -0.042 4.042
17 C -0.188 4.188
18 C 0.124 3.876
19 F -0.141 7.141
20 C -0.207 4.207
21 N -0.727 5.727
22 C -0.214 4.214
23 H 0.080 0.920
24 C -0.068 4.068
25 N -0.966 5.966
26 Si 0.956 3.044
27 H -0.286 1.286
28 H -0.305 1.305
29 H -0.277 1.277
30 H 0.048 0.952
31 H 0.048 0.952
32 H 0.049 0.951
33 H 0.048 0.952
34 H 0.057 0.943
35 H 0.058 0.942
36 H 0.061 0.939
37 H 0.083 0.917
38 H 0.048 0.952
39 H 0.415 0.585
40 H 0.069 0.931
41 H 0.096 0.904
42 H 0.093 0.907
43 H 0.154 0.846
44 H 0.171 0.829
45 H 0.160 0.840
46 H 0.136 0.864
47 H 0.372 0.628
48 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.163 3.353 10.318 15.566
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.129 4.129
3 C -0.199 4.199
4 C 0.065 3.935
5 H 0.080 0.920
6 C -0.002 4.002
7 N -0.351 5.351
8 C 0.299 3.701
9 O -0.453 6.453
10 C 0.009 3.991
11 H 0.135 0.865
12 C -0.226 4.226
13 O -0.219 6.219
14 C 0.098 3.902
15 C -0.240 4.240
16 C -0.060 4.060
17 C -0.207 4.207
18 C 0.105 3.895
19 F -0.120 7.120
20 C -0.226 4.226
21 N -0.367 5.367
22 C -0.346 4.346
23 H 0.097 0.903
24 C -0.261 4.261
25 N -0.617 5.617
26 Si 0.787 3.213
27 H -0.213 1.213
28 H -0.232 1.232
29 H -0.203 1.203
30 H 0.067 0.933
31 H 0.067 0.933
32 H 0.068 0.932
33 H 0.067 0.933
34 H 0.076 0.924
35 H 0.077 0.923
36 H 0.080 0.920
37 H 0.101 0.899
38 H 0.067 0.933
39 H 0.252 0.748
40 H 0.088 0.912
41 H 0.115 0.885
42 H 0.112 0.888
43 H 0.172 0.828
44 H 0.188 0.812
45 H 0.178 0.822
46 H 0.154 0.846
47 H 0.204 0.796
48 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 11.665 3.931 9.772 15.716
hybrid contribution -0.845 -0.969 -0.109 1.290
sum 10.820 2.962 9.663 14.806
Atomic orbital electron populations
1.21728 0.95372 1.01770 1.00302 1.21634 0.96415 0.96275 0.98558
1.21857 1.00856 0.95007 1.02199 1.20680 0.89782 0.86184 0.96894
0.91993 1.21676 0.94720 0.95582 0.88252 1.45801 1.05865 1.52638
1.30844 1.20483 0.82754 0.81059 0.85814 1.90691 1.56304 1.49768
1.48543 1.22342 0.79412 1.01707 0.95624 0.86542 1.22345 1.03365
1.02610 0.94303 1.86153 1.20358 1.42183 1.73194 1.18841 0.91653
0.87359 0.92348 1.21709 1.01767 0.97117 1.03409 1.21215 0.93422
0.96223 0.95157 1.21387 0.94933 1.00825 1.03561 1.17447 0.76923
0.95972 0.99184 1.91495 1.29859 1.95820 1.94826 1.20331 0.93037
1.01580 1.07675 1.42573 1.17289 1.03282 1.73520 1.19412 0.93260
0.92026 1.29899 0.90258 1.25310 1.00998 0.96244 1.03538 1.69790
1.38335 0.99698 1.53876 0.85473 0.81390 0.75836 0.78598 1.21313
1.23237 1.20286 0.93267 0.93268 0.93177 0.93303 0.92422 0.92257
0.92036 0.89894 0.93336 0.74784 0.91213 0.88483 0.88776 0.82830
0.81185 0.82201 0.84603 0.79551 0.94467
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.41 8.26 71.98 0.59 -3.82 16
2 C -0.11 -3.33 2.69 -10.80 -0.03 -3.35 16
3 C -0.14 -3.41 8.84 71.98 0.64 -2.78 16
4 C 0.17 5.75 2.18 44.99 0.10 5.85 16
5 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16
6 C 0.12 3.80 4.73 86.38 0.41 4.21 16
7 N -0.70 -20.91 5.28 -463.05 -2.45 -23.35 16
8 C 0.51 16.31 7.23 87.66 0.63 16.94 16
9 O -0.57 -22.95 16.50 15.99 0.26 -22.69 16
10 C 0.07 1.70 2.65 29.85 0.08 1.78 16
11 H 0.12 2.56 6.32 -2.39 -0.02 2.55 16
12 C -0.17 -3.07 9.06 71.98 0.65 -2.42 16
13 O -0.31 -8.79 9.33 -73.35 -0.68 -9.47 16
14 C 0.14 3.52 6.60 22.50 0.15 3.66 16
15 C -0.22 -4.15 8.24 22.37 0.18 -3.97 16
16 C -0.04 -0.63 10.04 22.25 0.22 -0.41 16
17 C -0.19 -3.10 10.02 22.33 0.22 -2.88 16
18 C 0.12 2.67 7.30 22.36 0.16 2.83 16
19 F -0.14 -3.19 17.27 44.97 0.78 -2.41 16
20 C -0.21 -5.04 9.97 22.40 0.22 -4.81 16
21 N -0.73 -30.75 4.44 -322.94 -1.43 -32.18 16
22 C -0.21 -10.10 7.57 84.03 0.64 -9.46 16
23 H 0.08 3.60 7.40 -2.92 -0.02 3.58 16
24 C -0.07 -3.51 5.50 84.86 0.47 -3.05 16
25 N -0.97 -53.92 13.06 21.65 0.28 -53.63 16
26 Si 0.96 42.35 29.55 68.60 2.03 44.38 16
27 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16
28 H -0.31 -14.11 7.11 99.48 0.71 -13.40 16
29 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16
30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16
31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16
32 H 0.05 2.02 6.01 -2.39 -0.01 2.00 16
33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
34 H 0.06 1.33 6.54 -2.39 -0.02 1.32 16
35 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16
36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
37 H 0.08 2.38 6.71 -2.39 -0.02 2.36 16
38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
39 H 0.41 11.89 7.56 -92.71 -0.70 11.19 16
40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16
41 H 0.10 1.54 7.56 -2.38 -0.02 1.52 16
42 H 0.09 1.36 6.90 -2.39 -0.02 1.35 16
43 H 0.15 2.37 5.42 -2.91 -0.02 2.35 16
44 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16
45 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16
46 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16
47 H 0.37 17.74 7.80 -92.70 -0.72 17.02 16
48 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16
Total: -1.00 -64.07 393.39 3.70 -60.37
By element:
Atomic # 1 Polarization: 41.08 SS G_CDS: -0.43 Total: 40.65 kcal
Atomic # 6 Polarization: -7.00 SS G_CDS: 5.34 Total: -1.66 kcal
Atomic # 7 Polarization: -105.57 SS G_CDS: -3.60 Total: -109.17 kcal
Atomic # 8 Polarization: -31.74 SS G_CDS: -0.42 Total: -32.16 kcal
Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal
Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal
Total: -64.07 3.70 -60.37 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001482534284.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.127 kcal
(2) G-P(sol) polarization free energy of solvation -64.069 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.196 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.371 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.498 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds