Wall clock time and date at job start Tue Mar 31 2020 20:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46829 * 2 1 4 4 C 1.53001 * 109.46820 * 240.00818 * 2 1 3 5 5 N 1.46898 * 109.47013 * 185.00070 * 4 2 1 6 6 C 1.46896 * 111.00207 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47257 * 179.97438 * 6 5 4 8 8 C 1.38304 * 119.93180 * 269.73008 * 7 6 5 9 9 C 1.38096 * 120.06716 * 179.72590 * 8 7 6 10 10 C 1.38880 * 119.93338 * 0.56726 * 9 8 7 11 11 O 1.35752 * 120.07499 * 179.68358 * 10 9 8 12 12 C 1.34827 * 117.00380 * 174.48640 * 11 10 9 13 13 H 1.08004 * 119.99919 * 5.05636 * 12 11 10 14 14 C 1.38647 * 120.00260 * 185.05697 * 12 11 10 15 15 N 1.31566 * 119.99893 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00296 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47002 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47339 * 119.99966 * 16 14 12 19 19 H 1.48504 * 109.47185 * 240.00062 * 16 14 12 20 20 C 1.38878 * 119.85910 * 359.70310 * 10 9 8 21 21 C 1.38099 * 119.93060 * 0.02562 * 20 10 9 22 22 N 1.46498 * 109.47127 * 120.00396 * 2 1 3 23 23 C 1.34777 * 120.00129 * 274.99901 * 22 2 1 24 24 O 1.21283 * 119.99790 * 0.02562 * 23 22 2 25 25 C 1.50697 * 119.99793 * 179.72664 * 23 22 2 26 26 C 1.52998 * 109.47012 * 180.27266 * 25 23 22 27 27 C 1.52994 * 109.47138 * 300.27549 * 25 23 22 28 28 F 1.39902 * 109.47145 * 60.28037 * 25 23 22 29 29 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46975 * 299.99102 * 1 2 3 31 31 H 1.08994 * 109.47314 * 59.99534 * 1 2 3 32 32 H 1.09004 * 109.47256 * 304.99284 * 4 2 1 33 33 H 1.08999 * 109.47481 * 65.00072 * 4 2 1 34 34 H 1.00898 * 111.00420 * 56.04146 * 5 4 2 35 35 H 1.09000 * 109.47278 * 299.99994 * 6 5 4 36 36 H 1.09002 * 109.47224 * 59.99732 * 6 5 4 37 37 H 1.08000 * 119.96478 * 359.97221 * 8 7 6 38 38 H 1.08002 * 120.03430 * 180.27204 * 9 8 7 39 39 H 0.96997 * 120.00226 * 179.97438 * 15 14 12 40 40 H 1.08001 * 120.03917 * 179.97438 * 20 10 9 41 41 H 1.08003 * 119.96547 * 179.97438 * 21 20 10 42 42 H 0.96996 * 119.99923 * 95.00156 * 22 2 1 43 43 H 1.09009 * 109.46998 * 59.99958 * 26 25 23 44 44 H 1.08996 * 109.47480 * 179.97438 * 26 25 23 45 45 H 1.09002 * 109.47694 * 300.00597 * 26 25 23 46 46 H 1.09004 * 109.47468 * 60.00191 * 27 25 23 47 47 H 1.09001 * 109.47413 * 180.02562 * 27 25 23 48 48 H 1.09003 * 109.47341 * 300.00105 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 3.5039 -0.8265 -1.1906 6 6 4.0302 -1.5156 -2.3764 7 6 5.5316 -1.6041 -2.2810 8 6 6.3173 -0.5961 -2.8096 9 6 7.6932 -0.6716 -2.7188 10 6 8.2882 -1.7668 -2.1063 11 8 9.6406 -1.8471 -2.0211 12 6 10.1496 -2.8770 -1.3153 13 1 9.4924 -3.6364 -0.9180 14 6 11.5165 -2.9612 -1.0994 15 7 12.3172 -2.0363 -1.5838 16 14 12.2215 -4.3877 -0.1210 17 1 11.1195 -5.2844 0.3106 18 1 13.1747 -5.1469 -0.9696 19 1 12.9309 -3.8653 1.0746 20 6 7.4966 -2.7801 -1.5814 21 6 6.1211 -2.6960 -1.6704 22 7 2.0183 -0.6907 1.1961 23 6 2.1471 -0.0184 2.3571 24 8 1.8582 1.1582 2.4118 25 6 2.6436 -0.7305 3.5890 26 6 2.6899 0.2512 4.7616 27 6 1.6977 -1.8845 3.9270 28 9 3.9271 -1.2337 3.3513 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6054 -1.7197 -1.2954 33 1 1.7516 -0.1581 -2.1370 34 1 3.7996 -1.2883 -0.3436 35 1 3.6093 -2.5197 -2.4298 36 1 3.7556 -0.9585 -3.2721 37 1 5.8541 0.2528 -3.2905 38 1 8.3060 0.1180 -3.1279 39 1 13.2735 -2.0950 -1.4325 40 1 7.9563 -3.6333 -1.1048 41 1 5.5050 -3.4839 -1.2628 42 1 2.2490 -1.6318 1.1525 43 1 1.6898 0.6434 4.9468 44 1 3.0485 -0.2639 5.6527 45 1 3.3637 1.0735 4.5208 46 1 1.6648 -2.5840 3.0916 47 1 2.0566 -2.3993 4.8183 48 1 0.6977 -1.4924 4.1122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483102980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:07 Heat of formation + Delta-G solvation = -95.853358 kcal Electronic energy + Delta-G solvation = -29033.367045 eV Core-core repulsion = 24810.099446 eV Total energy + Delta-G solvation = -4223.267599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.12654 -40.18759 -39.07075 -37.54322 -36.49797 -34.38432 -34.04949 -32.29451 -31.37370 -30.15873 -29.52127 -27.81973 -26.25770 -25.24849 -24.38821 -23.33384 -21.94119 -21.24986 -20.51136 -20.31162 -18.27507 -17.96584 -17.02114 -16.82023 -16.27667 -15.84119 -15.47599 -15.12366 -15.05087 -14.75488 -14.52589 -14.29070 -14.14088 -13.73259 -13.55350 -13.44295 -13.35960 -13.01571 -12.86745 -12.72953 -12.68541 -12.58245 -12.45874 -12.36345 -12.24717 -12.06217 -11.98447 -11.59130 -11.34957 -11.30451 -11.19864 -10.78236 -10.61734 -10.56037 -10.40970 -10.01209 -9.44380 -9.32186 -8.83624 -8.45003 -8.15675 -7.17689 -6.44345 -4.03137 2.16084 2.24016 2.28433 2.66933 3.12402 3.14225 3.19683 3.93243 3.97162 4.03490 4.08846 4.31175 4.40586 4.58454 4.67538 4.86127 5.00069 5.03301 5.10431 5.11238 5.18897 5.29960 5.30056 5.31772 5.34158 5.41645 5.43593 5.49754 5.60214 5.70161 5.73173 5.78629 5.79782 5.86279 5.90963 6.14700 6.22611 6.43708 6.71682 6.88935 6.97016 7.05282 7.07080 7.26674 7.31098 7.42279 7.45965 7.77918 7.84286 8.00827 9.01389 9.71817 10.73814 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.002598 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.412958 B =10775.806287 C =12479.935321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.099 0.901 4 C 0.050 3.950 5 N -0.684 5.684 6 C 0.119 3.881 7 C -0.187 4.187 8 C -0.051 4.051 9 C -0.194 4.194 10 C 0.157 3.843 11 O -0.178 6.178 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.862 5.862 16 Si 0.941 3.059 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.234 4.234 21 C -0.065 4.065 22 N -0.713 5.713 23 C 0.505 3.495 24 O -0.520 6.520 25 C 0.101 3.899 26 C -0.159 4.159 27 C -0.173 4.173 28 F -0.189 7.189 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.342 0.658 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.269 0.731 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.399 0.601 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.814 -0.733 7.269 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.117 0.883 4 C -0.080 4.080 5 N -0.316 5.316 6 C -0.009 4.009 7 C -0.189 4.189 8 C -0.070 4.070 9 C -0.214 4.214 10 C 0.103 3.897 11 O -0.081 6.081 12 C -0.467 4.467 13 H 0.110 0.890 14 C -0.165 4.165 15 N -0.497 5.497 16 Si 0.766 3.234 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.254 4.254 21 C -0.084 4.084 22 N -0.365 5.365 23 C 0.289 3.711 24 O -0.395 6.395 25 C 0.079 3.921 26 C -0.216 4.216 27 C -0.230 4.230 28 F -0.170 7.170 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.160 0.840 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.120 0.880 42 H 0.234 0.766 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.452 0.933 6.923 25.430 hybrid contribution 0.370 -2.236 0.636 2.354 sum -24.082 -1.303 7.559 25.274 Atomic orbital electron populations 1.22148 0.94833 1.02148 1.02903 1.21128 0.93603 0.98542 0.83042 0.88316 1.22290 0.89201 0.98920 0.97628 1.60529 1.07806 1.57703 1.05557 1.20626 0.91982 0.95517 0.92758 1.19084 0.93410 0.97761 1.08599 1.20460 0.92319 0.96772 0.97430 1.20231 0.94267 0.98801 1.08062 1.19402 0.84841 0.92844 0.92625 1.83980 1.14354 1.46698 1.63076 1.21371 0.91636 1.01738 1.31992 0.89041 1.25293 0.95061 0.98654 0.97540 1.70052 1.04328 1.32885 1.42469 0.85649 0.79205 0.79624 0.78956 1.19114 1.20159 1.20110 1.21111 0.93565 1.01679 1.09001 1.20564 0.94127 0.96445 0.97259 1.46026 1.66643 1.14093 1.09729 1.20770 0.78206 0.87418 0.84713 1.90728 1.49153 1.15163 1.84493 1.21199 0.80498 0.95568 0.94809 1.22173 1.04722 0.98999 0.95744 1.22411 0.99600 0.97067 1.03968 1.92981 1.39765 1.88611 1.95601 0.92481 0.91872 0.91216 0.94979 0.89392 0.83954 0.95436 0.91005 0.87064 0.86556 0.92067 0.85642 0.88034 0.76598 0.90068 0.90613 0.90404 0.90978 0.89884 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.48 37.16 0.35 -0.80 16 2 C 0.14 1.27 2.88 -67.93 -0.20 1.07 16 3 H 0.10 1.15 7.58 -51.93 -0.39 0.75 16 4 C 0.05 0.43 5.30 -3.83 -0.02 0.41 16 5 N -0.68 -8.11 6.48 -115.06 -0.75 -8.86 16 6 C 0.12 1.52 5.81 -4.98 -0.03 1.49 16 7 C -0.19 -3.14 5.40 -104.57 -0.56 -3.71 16 8 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 9 C -0.19 -4.19 9.99 -39.40 -0.39 -4.58 16 10 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 11 O -0.18 -5.14 9.76 0.05 0.00 -5.14 16 12 C -0.39 -11.02 9.49 30.88 0.29 -10.73 16 13 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 14 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 15 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 16 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 21 C -0.07 -1.17 9.69 -39.61 -0.38 -1.56 16 22 N -0.71 -6.42 4.24 -53.81 -0.23 -6.65 16 23 C 0.51 5.56 6.84 -10.99 -0.08 5.48 16 24 O -0.52 -7.34 15.65 5.55 0.09 -7.26 16 25 C 0.10 0.93 1.54 -91.78 -0.14 0.79 16 26 C -0.16 -1.36 8.22 37.16 0.31 -1.05 16 27 C -0.17 -1.03 8.82 37.15 0.33 -0.70 16 28 F -0.19 -2.25 16.79 2.25 0.04 -2.21 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.34 4.20 7.57 -39.29 -0.30 3.90 16 35 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 36 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 41 H 0.10 1.54 8.06 -52.48 -0.42 1.11 16 42 H 0.40 2.93 7.56 -40.82 -0.31 2.63 16 43 H 0.08 0.62 8.10 -51.92 -0.42 0.20 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 46 H 0.07 0.37 7.55 -51.93 -0.39 -0.03 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -33.08 403.02 -8.09 -41.18 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.43 Total: 8.09 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -1.63 Total: -16.10 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.22 Total: -40.27 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.08 -8.09 -41.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483102980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.678 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds