Wall clock time and date at job start Tue Mar 31 2020 20:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46829 * 2 1 4 4 C 1.53001 * 109.46820 * 240.00818 * 2 1 3 5 5 N 1.46898 * 109.47013 * 185.00070 * 4 2 1 6 6 C 1.46896 * 111.00207 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47257 * 179.97438 * 6 5 4 8 8 C 1.38304 * 119.93180 * 269.73008 * 7 6 5 9 9 C 1.38096 * 120.06716 * 179.72590 * 8 7 6 10 10 C 1.38880 * 119.93338 * 0.56726 * 9 8 7 11 11 O 1.35752 * 120.07499 * 179.68358 * 10 9 8 12 12 C 1.34827 * 117.00380 * 174.48640 * 11 10 9 13 13 H 1.08004 * 119.99919 * 5.05636 * 12 11 10 14 14 C 1.38647 * 120.00260 * 185.05697 * 12 11 10 15 15 N 1.31566 * 119.99893 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00296 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47002 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47339 * 119.99966 * 16 14 12 19 19 H 1.48504 * 109.47185 * 240.00062 * 16 14 12 20 20 C 1.38878 * 119.85910 * 359.70310 * 10 9 8 21 21 C 1.38099 * 119.93060 * 0.02562 * 20 10 9 22 22 N 1.46498 * 109.47127 * 120.00396 * 2 1 3 23 23 C 1.34777 * 120.00129 * 274.99901 * 22 2 1 24 24 O 1.21283 * 119.99790 * 0.02562 * 23 22 2 25 25 C 1.50697 * 119.99793 * 179.72664 * 23 22 2 26 26 C 1.52998 * 109.47012 * 180.27266 * 25 23 22 27 27 C 1.52994 * 109.47138 * 300.27549 * 25 23 22 28 28 F 1.39902 * 109.47145 * 60.28037 * 25 23 22 29 29 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46975 * 299.99102 * 1 2 3 31 31 H 1.08994 * 109.47314 * 59.99534 * 1 2 3 32 32 H 1.09004 * 109.47256 * 304.99284 * 4 2 1 33 33 H 1.08999 * 109.47481 * 65.00072 * 4 2 1 34 34 H 1.00898 * 111.00420 * 56.04146 * 5 4 2 35 35 H 1.09000 * 109.47278 * 299.99994 * 6 5 4 36 36 H 1.09002 * 109.47224 * 59.99732 * 6 5 4 37 37 H 1.08000 * 119.96478 * 359.97221 * 8 7 6 38 38 H 1.08002 * 120.03430 * 180.27204 * 9 8 7 39 39 H 0.96997 * 120.00226 * 179.97438 * 15 14 12 40 40 H 1.08001 * 120.03917 * 179.97438 * 20 10 9 41 41 H 1.08003 * 119.96547 * 179.97438 * 21 20 10 42 42 H 0.96996 * 119.99923 * 95.00156 * 22 2 1 43 43 H 1.09009 * 109.46998 * 59.99958 * 26 25 23 44 44 H 1.08996 * 109.47480 * 179.97438 * 26 25 23 45 45 H 1.09002 * 109.47694 * 300.00597 * 26 25 23 46 46 H 1.09004 * 109.47468 * 60.00191 * 27 25 23 47 47 H 1.09001 * 109.47413 * 180.02562 * 27 25 23 48 48 H 1.09003 * 109.47341 * 300.00105 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 3.5039 -0.8265 -1.1906 6 6 4.0302 -1.5156 -2.3764 7 6 5.5316 -1.6041 -2.2810 8 6 6.3173 -0.5961 -2.8096 9 6 7.6932 -0.6716 -2.7188 10 6 8.2882 -1.7668 -2.1063 11 8 9.6406 -1.8471 -2.0211 12 6 10.1496 -2.8770 -1.3153 13 1 9.4924 -3.6364 -0.9180 14 6 11.5165 -2.9612 -1.0994 15 7 12.3172 -2.0363 -1.5838 16 14 12.2215 -4.3877 -0.1210 17 1 11.1195 -5.2844 0.3106 18 1 13.1747 -5.1469 -0.9696 19 1 12.9309 -3.8653 1.0746 20 6 7.4966 -2.7801 -1.5814 21 6 6.1211 -2.6960 -1.6704 22 7 2.0183 -0.6907 1.1961 23 6 2.1471 -0.0184 2.3571 24 8 1.8582 1.1582 2.4118 25 6 2.6436 -0.7305 3.5890 26 6 2.6899 0.2512 4.7616 27 6 1.6977 -1.8845 3.9270 28 9 3.9271 -1.2337 3.3513 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6054 -1.7197 -1.2954 33 1 1.7516 -0.1581 -2.1370 34 1 3.7996 -1.2883 -0.3436 35 1 3.6093 -2.5197 -2.4298 36 1 3.7556 -0.9585 -3.2721 37 1 5.8541 0.2528 -3.2905 38 1 8.3060 0.1180 -3.1279 39 1 13.2735 -2.0950 -1.4325 40 1 7.9563 -3.6333 -1.1048 41 1 5.5050 -3.4839 -1.2628 42 1 2.2490 -1.6318 1.1525 43 1 1.6898 0.6434 4.9468 44 1 3.0485 -0.2639 5.6527 45 1 3.3637 1.0735 4.5208 46 1 1.6648 -2.5840 3.0916 47 1 2.0566 -2.3993 4.8183 48 1 0.6977 -1.4924 4.1122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483102980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:06 Heat of formation + Delta-G solvation = -118.618018 kcal Electronic energy + Delta-G solvation = -29034.354194 eV Core-core repulsion = 24810.099446 eV Total energy + Delta-G solvation = -4224.254748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.95655 -41.02950 -40.76392 -38.80805 -37.77467 -35.43329 -34.75200 -34.24682 -32.24733 -31.77040 -30.80166 -28.38412 -27.71153 -26.74303 -25.20674 -24.37866 -23.60016 -22.08481 -21.78933 -21.22982 -19.84709 -19.08696 -18.81715 -17.60626 -17.07493 -16.87750 -16.45846 -16.30914 -16.17762 -15.94167 -15.82164 -15.64701 -15.47286 -15.17466 -15.08969 -14.40114 -14.24648 -14.20342 -14.06187 -13.62096 -13.56849 -13.45354 -13.31215 -13.25687 -13.09464 -13.05473 -12.98020 -12.84581 -12.75993 -12.38837 -12.29111 -12.12968 -12.08464 -12.01519 -11.77624 -11.16741 -10.84907 -10.80407 -10.22534 -9.76918 -9.33303 -8.89641 -8.47417 -6.15693 0.61468 0.68325 1.32733 1.34429 1.43147 1.53148 1.93900 2.17464 2.77816 3.08387 3.25334 3.41468 3.45519 3.53395 3.64529 3.76583 3.89157 4.04089 4.07404 4.19070 4.25235 4.33854 4.49468 4.57078 4.61605 4.61976 4.66371 4.68081 4.73656 4.76656 4.80800 4.83168 4.95236 5.04471 5.07310 5.10518 5.12540 5.15563 5.27570 5.32077 5.43296 5.58217 5.72170 5.81408 6.03173 6.08467 6.26183 6.31560 6.41788 6.97397 7.00767 7.79082 8.76362 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.002598 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.412958 B =10775.806287 C =12479.935321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 H 0.067 0.933 4 C 0.057 3.943 5 N -0.701 5.701 6 C 0.124 3.876 7 C -0.160 4.160 8 C -0.049 4.049 9 C -0.209 4.209 10 C 0.113 3.887 11 O -0.235 6.235 12 C -0.412 4.412 13 H 0.102 0.898 14 C -0.025 4.025 15 N -0.923 5.923 16 Si 1.019 2.981 17 H -0.250 1.250 18 H -0.267 1.267 19 H -0.269 1.269 20 C -0.243 4.243 21 C -0.061 4.061 22 N -0.703 5.703 23 C 0.499 3.501 24 O -0.560 6.560 25 C 0.095 3.905 26 C -0.159 4.159 27 C -0.167 4.167 28 F -0.206 7.206 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.339 0.661 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.108 0.892 39 H 0.272 0.728 40 H 0.118 0.882 41 H 0.142 0.858 42 H 0.410 0.590 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.053 0.947 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.727 -2.887 7.670 29.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.037 3.963 3 H 0.085 0.915 4 C -0.073 4.073 5 N -0.333 5.333 6 C -0.004 4.004 7 C -0.161 4.161 8 C -0.068 4.068 9 C -0.229 4.229 10 C 0.063 3.937 11 O -0.142 6.142 12 C -0.488 4.488 13 H 0.119 0.881 14 C -0.222 4.222 15 N -0.561 5.561 16 Si 0.839 3.161 17 H -0.173 1.173 18 H -0.192 1.192 19 H -0.194 1.194 20 C -0.263 4.263 21 C -0.079 4.079 22 N -0.354 5.354 23 C 0.284 3.716 24 O -0.438 6.438 25 C 0.074 3.926 26 C -0.217 4.217 27 C -0.224 4.224 28 F -0.187 7.187 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.157 0.843 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.160 0.840 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.136 0.864 41 H 0.159 0.841 42 H 0.247 0.753 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.113 0.887 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.439 -1.243 7.299 29.387 hybrid contribution 1.209 -1.432 0.426 1.922 sum -27.231 -2.675 7.725 28.431 Atomic orbital electron populations 1.22068 0.93071 1.03279 1.02754 1.21113 0.94889 0.97002 0.83256 0.91484 1.22311 0.87050 1.00347 0.97545 1.60435 1.10122 1.57745 1.04987 1.20631 0.88450 0.97535 0.93802 1.19678 0.96159 0.95725 1.04521 1.20858 0.90817 0.98159 0.96932 1.20474 0.96014 0.98152 1.08237 1.19951 0.84078 0.94932 0.94748 1.83943 1.16723 1.47981 1.65505 1.21868 0.92458 1.02176 1.32334 0.88060 1.26619 0.95098 1.01865 0.98622 1.70200 1.04742 1.35843 1.45323 0.84520 0.78618 0.75813 0.77189 1.17298 1.19239 1.19445 1.21239 0.95269 1.00796 1.08960 1.20970 0.92683 0.97831 0.96450 1.45998 1.65696 1.14511 1.09227 1.21143 0.77754 0.87058 0.85666 1.90709 1.51097 1.16837 1.85176 1.21413 0.80281 0.96840 0.94052 1.22196 1.04709 0.98441 0.96352 1.22420 0.99181 0.95873 1.04957 1.92943 1.41216 1.88832 1.95692 0.90613 0.93513 0.89951 0.92380 0.88299 0.84302 0.92903 0.89421 0.84008 0.87353 0.91866 0.86448 0.84073 0.75349 0.89281 0.88817 0.92782 0.89779 0.88739 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.48 71.98 0.68 -1.05 16 2 C 0.14 2.19 2.88 44.99 0.13 2.32 16 3 H 0.07 1.50 7.58 -2.38 -0.02 1.48 16 4 C 0.06 0.73 5.30 86.30 0.46 1.19 16 5 N -0.70 -13.72 6.48 -517.93 -3.36 -17.08 16 6 C 0.12 2.51 5.81 85.56 0.50 3.01 16 7 C -0.16 -4.81 5.40 -19.83 -0.11 -4.91 16 8 C -0.05 -1.70 9.69 22.25 0.22 -1.48 16 9 C -0.21 -9.26 9.99 22.39 0.22 -9.03 16 10 C 0.11 5.78 6.65 22.58 0.15 5.93 16 11 O -0.23 -14.50 9.76 -22.73 -0.22 -14.72 16 12 C -0.41 -24.45 9.49 67.92 0.64 -23.81 16 13 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 14 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 15 N -0.92 -57.74 13.67 21.61 0.30 -57.45 16 16 Si 1.02 43.45 29.55 68.60 2.03 45.47 16 17 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 18 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 20 C -0.24 -10.64 9.17 22.39 0.21 -10.43 16 21 C -0.06 -2.02 9.69 22.25 0.22 -1.81 16 22 N -0.70 -11.07 4.24 -442.53 -1.88 -12.95 16 23 C 0.50 10.51 6.84 87.66 0.60 11.11 16 24 O -0.56 -15.93 15.65 -3.04 -0.05 -15.97 16 25 C 0.10 1.65 1.54 -11.54 -0.02 1.63 16 26 C -0.16 -2.64 8.22 71.98 0.59 -2.05 16 27 C -0.17 -1.53 8.82 71.98 0.64 -0.90 16 28 F -0.21 -4.69 16.79 44.97 0.76 -3.93 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.34 7.02 7.57 -89.70 -0.68 6.34 16 35 H 0.05 0.87 8.08 -2.39 -0.02 0.85 16 36 H 0.09 1.60 8.08 -2.39 -0.02 1.58 16 37 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 39 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 40 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 41 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.41 4.70 7.56 -92.71 -0.70 3.99 16 43 H 0.09 1.30 8.10 -2.38 -0.02 1.28 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 46 H 0.08 0.57 7.55 -2.39 -0.02 0.55 16 47 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 48 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -79.21 403.02 2.76 -76.45 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.40 Total: 31.44 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 5.59 Total: -31.27 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -4.94 Total: -87.48 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.27 Total: -30.69 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.76 Total: -3.93 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -79.21 2.76 -76.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483102980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.166 kcal (2) G-P(sol) polarization free energy of solvation -79.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds