Wall clock time and date at job start Tue Mar 31 2020 21:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00383 * 2 1 4 4 H 1.48501 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47095 * 299.99978 * 3 2 1 6 6 H 1.48500 * 109.46945 * 59.99740 * 3 2 1 7 7 C 1.38812 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00609 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00334 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46926 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47398 * 305.00364 * 11 10 9 13 13 C 1.53002 * 109.47233 * 65.00537 * 11 10 9 14 14 C 1.52997 * 109.47415 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46978 * 300.00098 * 14 13 11 16 16 C 1.53002 * 109.47128 * 59.99726 * 15 14 13 17 17 C 1.52992 * 109.47106 * 300.00123 * 16 15 14 18 18 H 1.09002 * 109.47103 * 299.99915 * 17 16 15 19 19 N 1.46497 * 109.47081 * 180.02562 * 17 16 15 20 20 C 1.34774 * 120.00383 * 84.99495 * 19 17 16 21 21 O 1.21600 * 120.00046 * 0.02562 * 20 19 17 22 22 C 1.47437 * 120.00298 * 180.02562 * 20 19 17 23 23 C 1.41292 * 126.40988 * 0.02562 * 22 20 19 24 24 N 1.30452 * 108.02028 * 179.97438 * 23 22 20 25 25 N 1.39940 * 108.89352 * 0.02562 * 24 23 22 26 26 C 1.46500 * 125.74834 * 180.02562 * 25 24 23 27 27 C 1.52998 * 109.47575 * 304.97406 * 26 25 24 28 28 F 1.39895 * 109.47423 * 179.97438 * 27 26 25 29 29 C 1.34256 * 108.49366 * 359.74716 * 25 24 23 30 30 H 0.97005 * 119.99734 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99300 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46761 * 60.00173 * 10 9 7 33 33 H 1.08991 * 109.47193 * 300.00307 * 10 9 7 34 34 H 1.09000 * 109.46986 * 299.99797 * 13 11 10 35 35 H 1.09002 * 109.47075 * 59.99068 * 13 11 10 36 36 H 1.09002 * 109.47045 * 59.99931 * 14 13 11 37 37 H 1.08998 * 109.47171 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.46698 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.46838 * 299.99316 * 15 14 13 40 40 H 1.09002 * 109.47070 * 60.00059 * 16 15 14 41 41 H 1.08996 * 109.46550 * 179.97438 * 16 15 14 42 42 H 0.97004 * 119.99924 * 264.99916 * 19 17 16 43 43 H 1.07996 * 125.99245 * 359.97438 * 23 22 20 44 44 H 1.09003 * 109.47402 * 64.97664 * 26 25 24 45 45 H 1.08998 * 109.47196 * 184.97328 * 26 25 24 46 46 H 1.09003 * 109.46966 * 300.00524 * 27 26 25 47 47 H 1.09007 * 109.46746 * 59.99953 * 27 26 25 48 48 H 1.08000 * 126.28976 * 180.24081 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 1 0.3798 -4.7126 0.8432 13 6 0.2685 -4.8115 -1.3059 14 6 -0.7254 -5.9747 -1.3056 15 6 0.0359 -7.2959 -1.1800 16 6 0.8311 -7.3041 0.1271 17 6 1.8249 -6.1409 0.1267 18 1 2.5088 -6.2476 -0.7153 19 7 2.5867 -6.1491 1.3780 20 6 3.6866 -6.9195 1.4923 21 8 4.0470 -7.6076 0.5567 22 6 4.4530 -6.9282 2.7518 23 6 4.1584 -6.1867 3.9179 24 7 5.0659 -6.4645 4.8128 25 7 5.9715 -7.3830 4.2699 26 6 7.1360 -7.9456 4.9580 27 6 8.0213 -6.8098 5.4747 28 9 9.1330 -7.3471 6.1323 29 6 5.5897 -7.6661 3.0143 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0002 32 1 2.6846 -3.7145 0.8906 33 1 2.6846 -3.7146 -0.8893 34 1 -0.2736 -3.8701 -1.3956 35 1 0.9523 -4.9185 -2.1479 36 1 -1.4093 -5.8680 -0.4636 37 1 -1.2922 -5.9686 -2.2366 38 1 -0.6722 -8.1246 -1.1793 39 1 0.7198 -7.4026 -2.0221 40 1 0.1472 -7.1974 0.9691 41 1 1.3731 -8.2455 0.2166 42 1 2.2995 -5.6000 2.1243 43 1 3.3275 -5.5088 4.0459 44 1 6.8023 -8.5565 5.7969 45 1 7.7055 -8.5628 4.2632 46 1 8.3550 -6.1989 4.6358 47 1 7.4518 -6.1926 6.1696 48 1 6.0826 -8.3447 2.3339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483437056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:10 Heat of formation + Delta-G solvation = -41.280643 kcal Electronic energy + Delta-G solvation = -29182.168728 eV Core-core repulsion = 24993.560331 eV Total energy + Delta-G solvation = -4188.608397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.79687 -42.43513 -40.88569 -39.09927 -36.39049 -35.39448 -34.95600 -33.65321 -31.61600 -31.18489 -30.90599 -29.53046 -26.93077 -25.02400 -24.69572 -24.27728 -22.71654 -21.97788 -21.73966 -21.19872 -20.60194 -19.34268 -18.85769 -17.51378 -17.41324 -17.13468 -16.72710 -16.63886 -16.23950 -15.99498 -15.72228 -15.58362 -15.37809 -15.11878 -15.04124 -14.87061 -14.68419 -14.50689 -14.01960 -13.91710 -13.76649 -13.53851 -13.28817 -12.93052 -12.74735 -12.65464 -12.62497 -12.25428 -12.14581 -12.05028 -11.88949 -11.84396 -11.81904 -11.45590 -11.29197 -11.08432 -10.94412 -10.75738 -10.65475 -10.03693 -9.65737 -8.95809 -7.93641 -5.21116 0.49016 1.12470 1.22275 1.47690 1.48096 1.57933 2.33238 2.49882 2.56645 3.13831 3.40052 3.55833 3.61130 3.73921 3.76712 3.84107 3.96436 3.98507 4.09543 4.14618 4.16386 4.23923 4.31216 4.43549 4.50659 4.51057 4.54662 4.57125 4.62235 4.73683 4.75890 4.91150 4.93789 5.09826 5.17606 5.22645 5.29397 5.34178 5.34686 5.36775 5.48284 5.51203 5.56943 5.68497 5.76686 6.29231 6.43282 6.67938 7.34451 7.36277 8.12175 8.36809 9.29816 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.008228 B = 0.002971 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3402.060892 B = 9423.318841 C =12377.577782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.160 3.840 11 C -0.085 4.085 12 H 0.079 0.921 13 C -0.105 4.105 14 C -0.114 4.114 15 C -0.110 4.110 16 C -0.118 4.118 17 C 0.165 3.835 18 H 0.068 0.932 19 N -0.711 5.711 20 C 0.596 3.404 21 O -0.589 6.589 22 C -0.311 4.311 23 C 0.089 3.911 24 N -0.319 5.319 25 N -0.361 5.361 26 C 0.099 3.901 27 C 0.055 3.945 28 F -0.216 7.216 29 C 0.141 3.859 30 H 0.251 0.749 31 H 0.376 0.624 32 H 0.025 0.975 33 H 0.004 0.996 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.408 0.592 43 H 0.207 0.793 44 H 0.112 0.888 45 H 0.141 0.859 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.054 -21.378 8.323 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.034 3.966 11 C -0.104 4.104 12 H 0.098 0.902 13 C -0.144 4.144 14 C -0.151 4.151 15 C -0.148 4.148 16 C -0.156 4.156 17 C 0.060 3.940 18 H 0.086 0.914 19 N -0.361 5.361 20 C 0.385 3.615 21 O -0.471 6.471 22 C -0.326 4.326 23 C -0.099 4.099 24 N -0.138 5.138 25 N -0.139 5.139 26 C -0.021 4.021 27 C 0.000 4.000 28 F -0.197 7.197 29 C -0.011 4.011 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.042 0.958 33 H 0.022 0.978 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.244 0.756 43 H 0.224 0.776 44 H 0.130 0.870 45 H 0.159 0.841 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 10.050 -21.599 8.976 25.458 hybrid contribution -0.334 1.479 -0.568 1.619 sum 9.716 -20.121 8.409 23.874 Atomic orbital electron populations 1.69801 1.06393 1.25913 1.59584 1.25470 0.96356 1.00754 1.03831 0.85152 0.78147 0.80214 0.76721 1.19456 1.22126 1.21859 1.19597 0.91266 0.85515 1.40981 0.91270 1.42525 1.05630 1.00828 1.89213 1.20764 0.93668 0.84989 0.97207 1.21429 0.96823 0.92587 0.99576 0.90237 1.21437 0.97961 0.98867 0.96093 1.21539 0.97406 0.93653 1.02533 1.21473 0.98896 0.97635 0.96839 1.21826 0.97459 0.97205 0.99146 1.20804 0.92449 0.94351 0.86393 0.91415 1.45806 1.27305 1.45971 1.17001 1.17434 0.79507 0.78483 0.86055 1.90729 1.70328 1.44563 1.41439 1.20265 1.03895 1.11397 0.97069 1.24434 0.98053 0.97687 0.89720 1.77156 1.03443 1.10072 1.23133 1.48474 1.21812 1.33418 1.10217 1.22578 0.83025 0.95988 1.00526 1.22130 0.84083 0.95618 0.98218 1.92786 1.55302 1.88266 1.83327 1.23347 0.94227 0.96864 0.86652 0.94006 0.79088 0.95759 0.97823 0.93132 0.92717 0.91433 0.91086 0.90011 0.92223 0.90772 0.92133 0.75593 0.77644 0.87029 0.84119 0.89593 0.89664 0.77111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.38 13.06 21.65 0.28 -58.10 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 3 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 7 C -0.24 -13.47 9.99 84.03 0.84 -12.63 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 9 N -0.74 -36.78 5.33 -343.46 -1.83 -38.61 16 10 C 0.16 6.32 5.56 86.38 0.48 6.80 16 11 C -0.08 -2.58 1.80 -10.79 -0.02 -2.59 16 12 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.11 -3.18 5.08 30.59 0.16 -3.02 16 14 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 15 C -0.11 -2.26 5.92 30.60 0.18 -2.08 16 16 C -0.12 -2.63 5.49 30.59 0.17 -2.46 16 17 C 0.17 4.40 1.90 44.99 0.09 4.48 16 18 H 0.07 2.11 7.57 -2.39 -0.02 2.10 16 19 N -0.71 -17.56 4.30 -445.82 -1.92 -19.47 16 20 C 0.60 15.88 7.78 86.67 0.67 16.55 16 21 O -0.59 -19.26 16.56 -4.03 -0.07 -19.33 16 22 C -0.31 -6.75 6.13 -20.15 -0.12 -6.87 16 23 C 0.09 1.77 11.50 85.65 0.99 2.75 16 24 N -0.32 -6.43 12.33 -56.27 -0.69 -7.13 16 25 N -0.36 -5.53 3.65 -346.31 -1.26 -6.79 16 26 C 0.10 0.83 6.94 86.38 0.60 1.43 16 27 C 0.06 0.59 7.73 71.98 0.56 1.15 16 28 F -0.22 -3.03 17.36 44.97 0.78 -2.25 16 29 C 0.14 2.37 11.25 84.27 0.95 3.32 16 30 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 31 H 0.38 19.70 6.85 -92.70 -0.63 19.07 16 32 H 0.02 0.95 7.30 -2.39 -0.02 0.93 16 33 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.05 1.81 7.18 -2.39 -0.02 1.80 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.41 8.76 7.35 -92.71 -0.68 8.08 16 43 H 0.21 3.20 7.50 -2.91 -0.02 3.18 16 44 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.14 0.37 8.06 -2.39 -0.02 0.35 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.21 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -72.96 395.68 3.16 -69.80 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -0.34 Total: 32.92 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 6.18 Total: 0.77 kcal Atomic # 7 Polarization: -124.68 SS G_CDS: -5.42 Total: -130.10 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.07 Total: -19.33 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -72.96 3.16 -69.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483437056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.515 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds