Wall clock time and date at job start Tue Mar 31 2020 22:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.49459 * 2 1 4 4 N 1.46495 * 109.47303 * 60.00042 * 3 2 1 5 5 C 1.34777 * 120.00305 * 179.97438 * 4 3 2 6 6 O 1.21602 * 119.99808 * 0.02562 * 5 4 3 7 7 C 1.47428 * 120.00054 * 180.02562 * 5 4 3 8 8 C 1.41282 * 126.41855 * 0.02562 * 7 5 4 9 9 N 1.30445 * 108.02511 * 179.97438 * 8 7 5 10 10 N 1.39936 * 108.89803 * 359.97438 * 9 8 7 11 11 C 1.46494 * 125.75419 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47105 * 305.02783 * 11 10 9 13 13 F 1.39908 * 109.46842 * 179.97438 * 12 11 10 14 14 C 1.34258 * 108.48783 * 359.75777 * 10 9 8 15 15 C 1.53040 * 109.49858 * 239.93446 * 2 1 3 16 16 C 1.53039 * 109.53756 * 301.34767 * 15 2 1 17 17 C 1.53195 * 109.34011 * 298.68191 * 16 15 2 18 18 N 1.46927 * 108.77345 * 54.62081 * 17 16 15 19 19 C 1.36938 * 120.62841 * 126.41349 * 18 17 16 20 20 H 1.08001 * 119.99916 * 332.55191 * 19 18 17 21 21 C 1.38813 * 119.99710 * 152.54617 * 19 18 17 22 22 N 1.31617 * 119.99569 * 159.36021 * 21 19 18 23 23 Si 1.86802 * 120.00046 * 339.36064 * 21 19 18 24 24 H 1.48500 * 109.46986 * 92.94497 * 23 21 19 25 25 H 1.48496 * 109.46910 * 212.94162 * 23 21 19 26 26 H 1.48493 * 109.47487 * 332.94466 * 23 21 19 27 27 C 1.46924 * 118.74035 * 306.39123 * 18 17 16 28 28 H 1.08990 * 109.47200 * 60.00063 * 1 2 3 29 29 H 1.09007 * 109.46816 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47102 * 299.99665 * 1 2 3 31 31 H 1.09000 * 109.46870 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47148 * 299.99844 * 3 2 1 33 33 H 0.97009 * 120.00118 * 0.02562 * 4 3 2 34 34 H 1.07999 * 125.99014 * 359.94728 * 8 7 5 35 35 H 1.09002 * 109.47333 * 65.03177 * 11 10 9 36 36 H 1.09003 * 109.47642 * 185.03207 * 11 10 9 37 37 H 1.08993 * 109.47520 * 299.99810 * 12 11 10 38 38 H 1.08997 * 109.47107 * 60.00402 * 12 11 10 39 39 H 1.08001 * 126.28828 * 180.24678 * 14 10 9 40 40 H 1.09000 * 109.45550 * 61.40094 * 15 2 1 41 41 H 1.08997 * 109.46054 * 181.35666 * 15 2 1 42 42 H 1.09004 * 109.49244 * 178.71313 * 16 15 2 43 43 H 1.09002 * 109.47163 * 58.63369 * 16 15 2 44 44 H 1.08996 * 109.58174 * 294.83102 * 17 16 15 45 45 H 1.09001 * 109.70195 * 174.47588 * 17 16 15 46 46 H 0.97005 * 119.99503 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.58721 * 293.82410 * 27 18 17 48 48 H 1.08997 * 109.58982 * 173.39910 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 7 1.5526 2.1331 1.1961 5 6 1.8791 3.4232 1.4097 6 8 2.5785 4.0139 0.6092 7 6 1.3885 4.1182 2.6137 8 6 0.5732 3.5663 3.6271 9 7 0.3558 4.4926 4.5194 10 7 1.0123 5.6641 4.1258 11 6 1.0131 6.9324 4.8589 12 6 -0.4292 7.3780 5.1087 13 9 -0.4284 8.5890 5.8093 14 6 1.6453 5.4281 2.9656 15 6 2.0408 -0.7227 -1.2485 16 6 1.5044 -2.1559 -1.2657 17 6 2.0154 -2.9038 -0.0303 18 7 1.6523 -2.1379 1.1699 19 6 0.9647 -2.7315 2.1946 20 1 0.3123 -3.5685 1.9938 21 6 1.1062 -2.2573 3.4916 22 7 0.1855 -2.5237 4.3937 23 14 2.6032 -1.2413 3.9565 24 1 2.2918 0.2016 3.7945 25 1 2.9665 -1.5136 5.3703 26 1 3.7412 -1.6041 3.0743 27 6 2.0413 -0.7234 1.2498 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1306 1.4418 0.0005 32 1 1.6775 1.9563 -0.8900 33 1 0.9950 1.6618 1.8349 34 1 0.1957 2.5549 3.6574 35 1 1.5231 6.8003 5.8131 36 1 1.5311 7.6910 4.2721 37 1 -0.9391 7.5102 4.1545 38 1 -0.9473 6.6195 5.6956 39 1 2.2431 6.1343 2.4085 40 1 1.6983 -0.1955 -2.1389 41 1 3.1305 -0.7435 -1.2358 42 1 1.8499 -2.6629 -2.1667 43 1 0.4146 -2.1361 -1.2541 44 1 3.0994 -3.0035 -0.0860 45 1 1.5593 -3.8927 0.0154 46 1 0.2846 -2.1927 5.3001 47 1 3.1274 -0.6453 1.2985 48 1 1.6003 -0.2728 2.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484164342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:55 Heat of formation + Delta-G solvation = 8.713896 kcal Electronic energy + Delta-G solvation = -30171.219793 eV Core-core repulsion = 25984.779321 eV Total energy + Delta-G solvation = -4186.440471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.20115 -41.58614 -39.59904 -38.33001 -34.92196 -34.57304 -33.22454 -31.58134 -30.70382 -30.59489 -29.40904 -26.73234 -25.94631 -25.33824 -24.16004 -23.03824 -22.21439 -21.06000 -20.48010 -19.98438 -18.54802 -18.07090 -16.93143 -16.81641 -16.58851 -16.00485 -15.76278 -15.53427 -15.21859 -15.11475 -14.66851 -14.35067 -14.23351 -13.84271 -13.77311 -13.55484 -13.53670 -13.25079 -12.97899 -12.91843 -12.46495 -12.16116 -12.05822 -11.96325 -11.65505 -11.53663 -11.20189 -11.12594 -11.04329 -10.74612 -10.53128 -10.38949 -10.04379 -9.91926 -9.85203 -9.73253 -9.63626 -9.45167 -9.03667 -8.70296 -8.63257 -6.98312 -5.98538 -3.33631 1.32372 1.92193 2.05214 3.24488 3.42320 3.46798 3.49182 3.52506 3.73848 4.05640 4.40308 4.45130 4.47973 4.53680 4.68044 4.81254 4.88370 5.02993 5.10895 5.17912 5.22663 5.23464 5.31379 5.40833 5.55782 5.61435 5.76789 5.82380 5.97738 5.99985 6.04357 6.21348 6.25607 6.28178 6.34674 6.38709 6.48989 6.53813 6.61204 6.62880 6.65749 6.75171 6.82642 7.02868 7.28499 7.72486 7.93136 8.29723 8.41024 8.91302 9.68806 10.07627 11.17257 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.003191 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.281659 B = 8772.568727 C =10068.336495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 C 0.134 3.866 4 N -0.719 5.719 5 C 0.594 3.406 6 O -0.558 6.558 7 C -0.287 4.287 8 C 0.091 3.909 9 N -0.295 5.295 10 N -0.368 5.368 11 C 0.103 3.897 12 C 0.053 3.947 13 F -0.208 7.208 14 C 0.129 3.871 15 C -0.096 4.096 16 C -0.137 4.137 17 C 0.146 3.854 18 N -0.603 5.603 19 C -0.256 4.256 20 H 0.086 0.914 21 C 0.025 3.975 22 N -0.907 5.907 23 Si 0.877 3.123 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.272 1.272 27 C 0.140 3.860 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.403 0.597 34 H 0.194 0.806 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.190 0.810 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.021 0.979 45 H 0.062 0.938 46 H 0.262 0.738 47 H 0.025 0.975 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 16.509 -4.811 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.096 4.096 3 C 0.010 3.990 4 N -0.370 5.370 5 C 0.381 3.619 6 O -0.438 6.438 7 C -0.302 4.302 8 C -0.097 4.097 9 N -0.114 5.114 10 N -0.148 5.148 11 C -0.019 4.019 12 C -0.003 4.003 13 F -0.189 7.189 14 C -0.021 4.021 15 C -0.134 4.134 16 C -0.176 4.176 17 C 0.020 3.980 18 N -0.326 5.326 19 C -0.384 4.384 20 H 0.103 0.897 21 C -0.174 4.174 22 N -0.550 5.550 23 Si 0.707 3.293 24 H -0.216 1.216 25 H -0.233 1.233 26 H -0.197 1.197 27 C 0.014 3.986 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.240 0.760 34 H 0.211 0.789 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.207 0.793 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.039 0.961 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.043 0.957 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.661 17.327 -3.991 17.793 hybrid contribution 1.075 0.201 0.094 1.098 sum 1.736 17.528 -3.897 18.040 Atomic orbital electron populations 1.21743 0.93628 1.03241 0.99951 1.21358 0.97168 0.92555 0.98478 1.21431 0.98881 0.91812 0.86880 1.45904 1.53556 1.11567 1.25962 1.17165 0.79372 0.81322 0.84026 1.90738 1.39234 1.66672 1.47178 1.20343 1.12850 0.95493 1.01495 1.24259 0.95471 0.99295 0.90667 1.77213 1.19339 0.91497 1.23318 1.48282 1.38827 1.10164 1.17518 1.22289 0.98805 0.81675 0.99114 1.22164 0.96730 0.83367 0.98049 1.92803 1.97492 1.47307 1.81265 1.22952 0.95016 0.97072 0.87082 1.21357 0.99998 0.96121 0.95918 1.22043 1.01445 0.95449 0.98617 1.20955 0.96574 0.94581 0.85852 1.44305 1.65917 1.04561 1.17776 1.18920 1.18661 1.15742 0.85087 0.89652 1.25255 0.97637 0.98848 0.95659 1.69834 1.32746 1.48282 1.04090 0.87071 0.86049 0.79326 0.76806 1.21577 1.23268 1.19748 1.21369 0.96610 0.85442 0.95217 0.93974 0.90476 0.93412 0.91742 0.91554 0.76045 0.78935 0.88088 0.87094 0.89911 0.88821 0.79348 0.92723 0.92427 0.92741 0.91481 0.96123 0.91966 0.92788 0.95748 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 7.81 37.16 0.29 -1.76 16 2 C -0.09 -1.50 0.53 -154.39 -0.08 -1.59 16 3 C 0.13 2.04 4.57 -4.04 -0.02 2.03 16 4 N -0.72 -11.15 4.99 -61.38 -0.31 -11.45 16 5 C 0.59 9.38 7.81 -12.52 -0.10 9.29 16 6 O -0.56 -10.07 16.90 5.28 0.09 -9.98 16 7 C -0.29 -3.93 6.13 -105.07 -0.64 -4.57 16 8 C 0.09 1.24 11.50 -16.98 -0.20 1.04 16 9 N -0.29 -3.86 12.33 30.86 0.38 -3.48 16 10 N -0.37 -3.80 3.65 -60.81 -0.22 -4.02 16 11 C 0.10 0.68 6.94 -4.04 -0.03 0.65 16 12 C 0.05 0.36 7.73 37.16 0.29 0.65 16 13 F -0.21 -1.73 17.36 2.25 0.04 -1.69 16 14 C 0.13 1.41 11.25 -16.56 -0.19 1.23 16 15 C -0.10 -1.39 4.71 -26.69 -0.13 -1.52 16 16 C -0.14 -2.07 5.74 -26.61 -0.15 -2.22 16 17 C 0.15 2.72 6.52 -3.71 -0.02 2.70 16 18 N -0.60 -13.36 2.21 -172.32 -0.38 -13.74 16 19 C -0.26 -6.74 10.03 -15.06 -0.15 -6.89 16 20 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 21 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 22 N -0.91 -26.56 13.97 55.49 0.78 -25.78 16 23 Si 0.88 21.62 24.35 -169.99 -4.14 17.48 16 24 H -0.29 -6.61 6.62 56.52 0.37 -6.24 16 25 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 26 H -0.27 -6.78 6.64 56.52 0.38 -6.40 16 27 C 0.14 2.82 2.62 -3.71 -0.01 2.81 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.39 5.97 -51.93 -0.31 1.08 16 30 H 0.05 0.77 6.86 -51.93 -0.36 0.41 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.40 6.24 5.17 -40.82 -0.21 6.03 16 34 H 0.19 2.45 7.50 -52.49 -0.39 2.06 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 0.44 8.06 -51.93 -0.42 0.02 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.05 6.34 -51.93 -0.33 0.72 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.02 0.52 7.07 -51.93 -0.37 0.15 16 48 H 0.07 1.52 3.41 -51.93 -0.18 1.34 16 LS Contribution 379.41 15.07 5.72 5.72 Total: -1.00 -32.59 379.41 -6.51 -39.10 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.24 Total: 5.42 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.23 Total: 2.43 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.25 Total: -58.47 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.14 Total: 17.48 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.59 -6.51 -39.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484164342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.811 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds