Wall clock time and date at job start Tue Mar 31 2020 22:01:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86798 * 120.00070 * 2 1
4 4 H 1.48497 * 109.47463 * 239.99847 * 3 2 1
5 5 H 1.48509 * 109.47166 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.47233 * 119.99322 * 3 2 1
7 7 C 1.38811 * 119.99922 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99655 * 180.02562 * 7 2 1
9 9 N 1.36933 * 120.00022 * 0.02562 * 7 2 1
10 10 C 1.46502 * 120.00158 * 179.97438 * 9 7 2
11 11 C 1.53002 * 109.47076 * 179.97438 * 10 9 7
12 12 C 1.53001 * 109.46694 * 179.97438 * 11 10 9
13 13 O 1.42905 * 109.47032 * 180.02562 * 12 11 10
14 14 C 1.42901 * 113.99996 * 179.97438 * 13 12 11
15 15 C 1.53039 * 109.45644 * 149.99976 * 14 13 12
16 16 C 1.53188 * 109.31224 * 181.38608 * 15 14 13
17 17 N 1.46923 * 108.77648 * 305.36847 * 16 15 14
18 18 C 1.34784 * 120.63216 * 233.58504 * 17 16 15
19 19 O 1.21283 * 119.99649 * 359.97438 * 18 17 16
20 20 C 1.50697 * 119.99774 * 179.72717 * 18 17 16
21 21 N 1.46507 * 109.47005 * 180.02562 * 20 18 17
22 22 C 1.34593 * 126.44040 * 124.70733 * 21 20 18
23 23 N 1.31077 * 106.67746 * 179.87818 * 22 21 20
24 24 N 1.28846 * 107.98745 * 0.38497 * 23 22 21
25 25 N 1.28733 * 109.40154 * 359.75644 * 24 23 22
26 26 C 1.46927 * 118.74026 * 53.86164 * 17 16 15
27 27 C 1.53034 * 109.46291 * 270.07144 * 14 13 12
28 28 H 0.96999 * 119.99767 * 359.97438 * 1 2 3
29 29 H 0.97002 * 120.00369 * 359.97438 * 9 7 2
30 30 H 1.09001 * 109.46672 * 59.99740 * 10 9 7
31 31 H 1.08995 * 109.46896 * 300.00134 * 10 9 7
32 32 H 1.09001 * 109.46584 * 60.00532 * 11 10 9
33 33 H 1.08995 * 109.47627 * 300.00003 * 11 10 9
34 34 H 1.08997 * 109.47108 * 60.00519 * 12 11 10
35 35 H 1.08995 * 109.47258 * 300.00439 * 12 11 10
36 36 H 1.09000 * 109.45726 * 30.03500 * 14 13 12
37 37 H 1.09005 * 109.49539 * 61.43852 * 15 14 13
38 38 H 1.08999 * 109.53138 * 301.35481 * 15 14 13
39 39 H 1.09000 * 109.58866 * 185.58181 * 16 15 14
40 40 H 1.08999 * 109.70169 * 65.22658 * 16 15 14
41 41 H 1.09001 * 109.46809 * 299.99238 * 20 18 17
42 42 H 1.08993 * 109.47525 * 59.99679 * 20 18 17
43 43 H 1.07994 * 126.66226 * 0.02562 * 22 21 20
44 44 H 1.09001 * 109.58608 * 65.92230 * 26 17 16
45 45 H 1.08993 * 109.58827 * 186.35713 * 26 17 16
46 46 H 1.09001 * 109.49985 * 298.56828 * 27 14 13
47 47 H 1.09001 * 109.50072 * 58.62834 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.1041 1.6964 -1.2124
5 1 1.2852 2.7465 -0.0006
6 1 3.1039 1.6965 1.2126
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3256 -2.3880 0.0005
10 6 2.0581 -3.6568 0.0005
11 6 1.0638 -4.8197 0.0012
12 6 1.8288 -6.1447 0.0005
13 8 0.9002 -7.2309 0.0005
14 6 1.5148 -8.5210 -0.0006
15 6 0.6063 -9.5191 0.7209
16 6 1.2837 -10.8928 0.7481
17 7 1.6297 -11.2767 -0.6272
18 6 1.2258 -12.4592 -1.1324
19 8 0.5706 -13.2181 -0.4500
20 6 1.5837 -12.8359 -2.5470
21 7 1.0318 -14.1577 -2.8549
22 6 0.2181 -14.4648 -3.8820
23 7 -0.0346 -15.7478 -3.7911
24 7 0.5848 -16.2030 -2.7570
25 7 1.2301 -15.2449 -2.1889
26 6 2.4297 -10.3498 -1.4394
27 6 1.7347 -8.9797 -1.4439
28 1 -0.4850 0.8401 0.0004
29 1 0.3556 -2.3881 0.0005
30 1 2.6848 -3.7145 0.8905
31 1 2.6847 -3.7145 -0.8894
32 1 0.4369 -4.7621 -0.8887
33 1 0.4375 -4.7618 0.8913
34 1 2.4560 -6.2025 0.8901
35 1 2.4549 -6.2023 -0.8898
36 1 2.4745 -8.4664 0.5132
37 1 -0.3447 -9.5927 0.1932
38 1 0.4306 -9.1799 1.7418
39 1 0.6005 -11.6288 1.1719
40 1 2.1893 -10.8441 1.3527
41 1 1.1680 -12.0998 -3.2352
42 1 2.6681 -12.8608 -2.6532
43 1 -0.1525 -13.7865 -4.6362
44 1 3.4271 -10.2552 -1.0101
45 1 2.5027 -10.7273 -2.4593
46 1 0.7732 -9.0584 -1.9512
47 1 2.3622 -8.2560 -1.9641
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001485439178.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:01:42
Heat of formation + Delta-G solvation = 27.186485 kcal
Electronic energy + Delta-G solvation = -28219.711797 eV
Core-core repulsion = 24053.992319 eV
Total energy + Delta-G solvation = -4165.719478 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.185 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-45.17479 -41.45122 -39.68180 -37.83187 -36.82444 -36.46966 -34.33936 -33.53899
-33.16245 -32.21405 -31.29683 -29.99563 -27.04411 -25.84219 -24.85986 -24.69790
-24.34476 -23.78514 -22.47342 -21.98340 -20.33654 -19.14109 -19.00633 -18.59987
-17.84629 -17.46783 -17.12246 -16.85325 -16.66985 -16.58055 -16.47211 -15.69863
-15.40485 -15.23349 -15.10861 -14.93706 -14.79631 -14.35028 -14.04299 -13.87036
-13.54411 -13.36580 -13.25375 -13.14115 -12.88863 -12.82224 -12.45947 -12.43607
-12.31716 -12.19089 -12.13128 -12.09343 -12.05273 -11.79847 -11.72032 -11.47819
-11.45379 -10.99024 -10.92449 -10.37291 -9.86887 -9.01924 -7.95444 -5.25549
0.25542 0.95032 1.24873 1.31878 1.48642 1.52028 1.58299 1.81498
2.51656 2.67233 3.02996 3.38372 3.41454 3.48711 3.72355 3.80336
3.93320 3.94732 3.97815 4.00312 4.11115 4.14744 4.29024 4.30956
4.36731 4.39393 4.45558 4.59333 4.66602 4.69450 4.73390 4.75669
4.78806 4.81434 4.83169 4.96809 5.12854 5.19884 5.27531 5.34590
5.35463 5.41428 5.49273 6.16006 6.25960 6.37100 6.88401 7.32347
7.57104 8.08228 8.30546 9.28081
Molecular weight = 338.19amu
Principal moments of inertia in cm(-1)
A = 0.034395 B = 0.001448 C = 0.001426
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 813.873589 B =19338.156543 C =19631.321993
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.971 5.971
2 C -0.077 4.077
3 Si 0.977 3.023
4 H -0.275 1.275
5 H -0.296 1.296
6 H -0.277 1.277
7 C -0.251 4.251
8 H 0.080 0.920
9 N -0.751 5.751
10 C 0.155 3.845
11 C -0.115 4.115
12 C 0.079 3.921
13 O -0.404 6.404
14 C 0.081 3.919
15 C -0.126 4.126
16 C 0.120 3.880
17 N -0.601 5.601
18 C 0.499 3.501
19 O -0.573 6.573
20 C 0.091 3.909
21 N -0.299 5.299
22 C 0.184 3.816
23 N -0.348 5.348
24 N -0.120 5.120
25 N -0.095 5.095
26 C 0.104 3.896
27 C -0.156 4.156
28 H 0.252 0.748
29 H 0.373 0.627
30 H 0.025 0.975
31 H 0.030 0.970
32 H 0.059 0.941
33 H 0.054 0.946
34 H 0.059 0.941
35 H 0.069 0.931
36 H 0.077 0.923
37 H 0.059 0.941
38 H 0.079 0.921
39 H 0.076 0.924
40 H 0.090 0.910
41 H 0.200 0.800
42 H 0.173 0.827
43 H 0.294 0.706
44 H 0.099 0.901
45 H 0.130 0.870
46 H 0.071 0.929
47 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.462 -26.181 -8.673 28.849
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.621 5.621
2 C -0.269 4.269
3 Si 0.806 3.194
4 H -0.201 1.201
5 H -0.222 1.222
6 H -0.203 1.203
7 C -0.383 4.383
8 H 0.098 0.902
9 N -0.393 5.393
10 C 0.029 3.971
11 C -0.153 4.153
12 C 0.002 3.998
13 O -0.323 6.323
14 C 0.024 3.976
15 C -0.164 4.164
16 C -0.003 4.003
17 N -0.335 5.335
18 C 0.286 3.714
19 O -0.451 6.451
20 C -0.031 4.031
21 N -0.102 5.102
22 C -0.114 4.114
23 N -0.196 5.196
24 N -0.114 5.114
25 N -0.083 5.083
26 C -0.017 4.017
27 C -0.194 4.194
28 H 0.060 0.940
29 H 0.204 0.796
30 H 0.043 0.957
31 H 0.048 0.952
32 H 0.078 0.922
33 H 0.073 0.927
34 H 0.077 0.923
35 H 0.087 0.913
36 H 0.095 0.905
37 H 0.078 0.922
38 H 0.098 0.902
39 H 0.095 0.905
40 H 0.108 0.892
41 H 0.217 0.783
42 H 0.190 0.810
43 H 0.309 0.691
44 H 0.117 0.883
45 H 0.148 0.852
46 H 0.090 0.910
47 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 8.192 -27.742 -7.722 29.939
hybrid contribution -0.303 2.080 0.164 2.109
sum 7.889 -25.662 -7.558 27.891
Atomic orbital electron populations
1.69827 1.06771 1.26245 1.59301 1.25640 0.96425 1.01357 1.03478
0.85158 0.77159 0.78780 0.78327 1.20084 1.22238 1.20269 1.19653
0.91685 0.85288 1.41633 0.90241 1.42607 1.05712 1.01424 1.89595
1.20681 0.93834 0.84404 0.98218 1.21489 0.98631 0.93069 1.02092
1.22331 0.91207 0.84846 1.01378 1.87921 1.34742 1.14410 1.95272
1.22249 0.96427 0.82300 0.96637 1.21910 0.99076 0.93568 1.01845
1.21534 1.01048 0.94995 0.82684 1.48186 1.53172 1.17253 1.14853
1.20827 0.79518 0.81554 0.89510 1.90852 1.40809 1.51537 1.61897
1.22669 1.05400 0.78969 0.96111 1.48461 1.33064 1.09927 1.18710
1.28787 0.92792 0.95028 0.94783 1.74900 1.21087 1.09355 1.14210
1.78653 1.08079 1.21298 1.03400 1.78914 1.20108 0.90412 1.18836
1.22267 0.94534 0.87358 0.97527 1.22506 1.02646 0.97606 0.96647
0.93976 0.79591 0.95743 0.95242 0.92209 0.92729 0.92262 0.91313
0.90498 0.92202 0.90216 0.90525 0.89161 0.78305 0.80977 0.69077
0.88322 0.85193 0.91028 0.88721
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -59.23 13.06 21.65 0.28 -58.94 16
2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16
3 Si 0.98 45.12 29.55 68.60 2.03 47.15 16
4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16
5 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16
6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16
7 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16
8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16
9 N -0.75 -37.92 5.60 -343.46 -1.92 -39.84 16
10 C 0.15 5.81 6.26 86.38 0.54 6.35 16
11 C -0.11 -3.50 5.70 30.60 0.17 -3.32 16
12 C 0.08 1.67 5.75 71.98 0.41 2.08 16
13 O -0.40 -8.48 9.99 -148.98 -1.49 -9.97 16
14 C 0.08 1.00 2.57 30.62 0.08 1.07 16
15 C -0.13 -1.64 5.73 30.67 0.18 -1.47 16
16 C 0.12 1.31 6.43 86.36 0.56 1.87 16
17 N -0.60 -4.19 2.97 -818.07 -2.43 -6.62 16
18 C 0.50 5.31 7.72 87.65 0.68 5.99 16
19 O -0.57 -13.39 15.11 -3.04 -0.05 -13.44 16
20 C 0.09 0.03 5.31 85.63 0.45 0.49 16
21 N -0.30 -3.28 3.19 -355.56 -1.13 -4.41 16
22 C 0.18 1.59 12.79 180.27 2.31 3.89 16
23 N -0.35 -7.07 12.36 -60.30 -0.75 -7.81 16
24 N -0.12 -3.11 13.43 37.01 0.50 -2.62 16
25 N -0.10 -2.11 12.29 37.02 0.45 -1.66 16
26 C 0.10 -0.06 6.37 86.51 0.55 0.49 16
27 C -0.16 -0.89 5.71 30.82 0.18 -0.71 16
28 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16
29 H 0.37 20.22 7.67 -92.71 -0.71 19.51 16
30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16
31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16
32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16
34 H 0.06 1.13 8.09 -2.39 -0.02 1.11 16
35 H 0.07 1.17 7.84 -2.39 -0.02 1.15 16
36 H 0.08 0.74 7.79 -2.39 -0.02 0.72 16
37 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16
38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
39 H 0.08 1.24 7.01 -2.39 -0.02 1.22 16
40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16
41 H 0.20 -2.16 7.65 -2.39 -0.02 -2.17 16
42 H 0.17 -1.11 7.92 -2.39 -0.02 -1.13 16
43 H 0.29 -1.65 8.06 -2.91 -0.02 -1.67 16
44 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16
45 H 0.13 -1.17 5.93 -2.39 -0.01 -1.18 16
46 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16
47 H 0.09 0.42 7.84 -2.39 -0.02 0.40 16
Total: -1.00 -92.72 389.89 3.18 -89.54
By element:
Atomic # 1 Polarization: 8.52 SS G_CDS: 0.27 Total: 8.80 kcal
Atomic # 6 Polarization: -7.58 SS G_CDS: 7.41 Total: -0.18 kcal
Atomic # 7 Polarization: -116.91 SS G_CDS: -5.00 Total: -121.91 kcal
Atomic # 8 Polarization: -21.87 SS G_CDS: -1.53 Total: -23.40 kcal
Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal
Total: -92.72 3.18 -89.54 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485439178.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.728 kcal
(2) G-P(sol) polarization free energy of solvation -92.722 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.006 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.186 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds