Wall clock time and date at job start Tue Mar 31 2020 22:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47463 * 239.99847 * 3 2 1 5 5 H 1.48509 * 109.47166 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47233 * 119.99322 * 3 2 1 7 7 C 1.38811 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99655 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00158 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47076 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46694 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.47032 * 180.02562 * 12 11 10 14 14 C 1.42901 * 113.99996 * 179.97438 * 13 12 11 15 15 C 1.53039 * 109.45644 * 149.99976 * 14 13 12 16 16 C 1.53188 * 109.31224 * 181.38608 * 15 14 13 17 17 N 1.46923 * 108.77648 * 305.36847 * 16 15 14 18 18 C 1.34784 * 120.63216 * 233.58504 * 17 16 15 19 19 O 1.21283 * 119.99649 * 359.97438 * 18 17 16 20 20 C 1.50697 * 119.99774 * 179.72717 * 18 17 16 21 21 N 1.46507 * 109.47005 * 180.02562 * 20 18 17 22 22 C 1.34593 * 126.44040 * 124.70733 * 21 20 18 23 23 N 1.31077 * 106.67746 * 179.87818 * 22 21 20 24 24 N 1.28846 * 107.98745 * 0.38497 * 23 22 21 25 25 N 1.28733 * 109.40154 * 359.75644 * 24 23 22 26 26 C 1.46927 * 118.74026 * 53.86164 * 17 16 15 27 27 C 1.53034 * 109.46291 * 270.07144 * 14 13 12 28 28 H 0.96999 * 119.99767 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00369 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46672 * 59.99740 * 10 9 7 31 31 H 1.08995 * 109.46896 * 300.00134 * 10 9 7 32 32 H 1.09001 * 109.46584 * 60.00532 * 11 10 9 33 33 H 1.08995 * 109.47627 * 300.00003 * 11 10 9 34 34 H 1.08997 * 109.47108 * 60.00519 * 12 11 10 35 35 H 1.08995 * 109.47258 * 300.00439 * 12 11 10 36 36 H 1.09000 * 109.45726 * 30.03500 * 14 13 12 37 37 H 1.09005 * 109.49539 * 61.43852 * 15 14 13 38 38 H 1.08999 * 109.53138 * 301.35481 * 15 14 13 39 39 H 1.09000 * 109.58866 * 185.58181 * 16 15 14 40 40 H 1.08999 * 109.70169 * 65.22658 * 16 15 14 41 41 H 1.09001 * 109.46809 * 299.99238 * 20 18 17 42 42 H 1.08993 * 109.47525 * 59.99679 * 20 18 17 43 43 H 1.07994 * 126.66226 * 0.02562 * 22 21 20 44 44 H 1.09001 * 109.58608 * 65.92230 * 26 17 16 45 45 H 1.08993 * 109.58827 * 186.35713 * 26 17 16 46 46 H 1.09001 * 109.49985 * 298.56828 * 27 14 13 47 47 H 1.09001 * 109.50072 * 58.62834 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.8288 -6.1447 0.0005 13 8 0.9002 -7.2309 0.0005 14 6 1.5148 -8.5210 -0.0006 15 6 0.6063 -9.5191 0.7209 16 6 1.2837 -10.8928 0.7481 17 7 1.6297 -11.2767 -0.6272 18 6 1.2258 -12.4592 -1.1324 19 8 0.5706 -13.2181 -0.4500 20 6 1.5837 -12.8359 -2.5470 21 7 1.0318 -14.1577 -2.8549 22 6 0.2181 -14.4648 -3.8820 23 7 -0.0346 -15.7478 -3.7911 24 7 0.5848 -16.2030 -2.7570 25 7 1.2301 -15.2449 -2.1889 26 6 2.4297 -10.3498 -1.4394 27 6 1.7347 -8.9797 -1.4439 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6848 -3.7145 0.8905 31 1 2.6847 -3.7145 -0.8894 32 1 0.4369 -4.7621 -0.8887 33 1 0.4375 -4.7618 0.8913 34 1 2.4560 -6.2025 0.8901 35 1 2.4549 -6.2023 -0.8898 36 1 2.4745 -8.4664 0.5132 37 1 -0.3447 -9.5927 0.1932 38 1 0.4306 -9.1799 1.7418 39 1 0.6005 -11.6288 1.1719 40 1 2.1893 -10.8441 1.3527 41 1 1.1680 -12.0998 -3.2352 42 1 2.6681 -12.8608 -2.6532 43 1 -0.1525 -13.7865 -4.6362 44 1 3.4271 -10.2552 -1.0101 45 1 2.5027 -10.7273 -2.4593 46 1 0.7732 -9.0584 -1.9512 47 1 2.3622 -8.2560 -1.9641 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485439178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:42 Heat of formation + Delta-G solvation = 27.186485 kcal Electronic energy + Delta-G solvation = -28219.711797 eV Core-core repulsion = 24053.992319 eV Total energy + Delta-G solvation = -4165.719478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.17479 -41.45122 -39.68180 -37.83187 -36.82444 -36.46966 -34.33936 -33.53899 -33.16245 -32.21405 -31.29683 -29.99563 -27.04411 -25.84219 -24.85986 -24.69790 -24.34476 -23.78514 -22.47342 -21.98340 -20.33654 -19.14109 -19.00633 -18.59987 -17.84629 -17.46783 -17.12246 -16.85325 -16.66985 -16.58055 -16.47211 -15.69863 -15.40485 -15.23349 -15.10861 -14.93706 -14.79631 -14.35028 -14.04299 -13.87036 -13.54411 -13.36580 -13.25375 -13.14115 -12.88863 -12.82224 -12.45947 -12.43607 -12.31716 -12.19089 -12.13128 -12.09343 -12.05273 -11.79847 -11.72032 -11.47819 -11.45379 -10.99024 -10.92449 -10.37291 -9.86887 -9.01924 -7.95444 -5.25549 0.25542 0.95032 1.24873 1.31878 1.48642 1.52028 1.58299 1.81498 2.51656 2.67233 3.02996 3.38372 3.41454 3.48711 3.72355 3.80336 3.93320 3.94732 3.97815 4.00312 4.11115 4.14744 4.29024 4.30956 4.36731 4.39393 4.45558 4.59333 4.66602 4.69450 4.73390 4.75669 4.78806 4.81434 4.83169 4.96809 5.12854 5.19884 5.27531 5.34590 5.35463 5.41428 5.49273 6.16006 6.25960 6.37100 6.88401 7.32347 7.57104 8.08228 8.30546 9.28081 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.034395 B = 0.001448 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.873589 B =19338.156543 C =19631.321993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.080 0.920 9 N -0.751 5.751 10 C 0.155 3.845 11 C -0.115 4.115 12 C 0.079 3.921 13 O -0.404 6.404 14 C 0.081 3.919 15 C -0.126 4.126 16 C 0.120 3.880 17 N -0.601 5.601 18 C 0.499 3.501 19 O -0.573 6.573 20 C 0.091 3.909 21 N -0.299 5.299 22 C 0.184 3.816 23 N -0.348 5.348 24 N -0.120 5.120 25 N -0.095 5.095 26 C 0.104 3.896 27 C -0.156 4.156 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.025 0.975 31 H 0.030 0.970 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.200 0.800 42 H 0.173 0.827 43 H 0.294 0.706 44 H 0.099 0.901 45 H 0.130 0.870 46 H 0.071 0.929 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.462 -26.181 -8.673 28.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.098 0.902 9 N -0.393 5.393 10 C 0.029 3.971 11 C -0.153 4.153 12 C 0.002 3.998 13 O -0.323 6.323 14 C 0.024 3.976 15 C -0.164 4.164 16 C -0.003 4.003 17 N -0.335 5.335 18 C 0.286 3.714 19 O -0.451 6.451 20 C -0.031 4.031 21 N -0.102 5.102 22 C -0.114 4.114 23 N -0.196 5.196 24 N -0.114 5.114 25 N -0.083 5.083 26 C -0.017 4.017 27 C -0.194 4.194 28 H 0.060 0.940 29 H 0.204 0.796 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.217 0.783 42 H 0.190 0.810 43 H 0.309 0.691 44 H 0.117 0.883 45 H 0.148 0.852 46 H 0.090 0.910 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.192 -27.742 -7.722 29.939 hybrid contribution -0.303 2.080 0.164 2.109 sum 7.889 -25.662 -7.558 27.891 Atomic orbital electron populations 1.69827 1.06771 1.26245 1.59301 1.25640 0.96425 1.01357 1.03478 0.85158 0.77159 0.78780 0.78327 1.20084 1.22238 1.20269 1.19653 0.91685 0.85288 1.41633 0.90241 1.42607 1.05712 1.01424 1.89595 1.20681 0.93834 0.84404 0.98218 1.21489 0.98631 0.93069 1.02092 1.22331 0.91207 0.84846 1.01378 1.87921 1.34742 1.14410 1.95272 1.22249 0.96427 0.82300 0.96637 1.21910 0.99076 0.93568 1.01845 1.21534 1.01048 0.94995 0.82684 1.48186 1.53172 1.17253 1.14853 1.20827 0.79518 0.81554 0.89510 1.90852 1.40809 1.51537 1.61897 1.22669 1.05400 0.78969 0.96111 1.48461 1.33064 1.09927 1.18710 1.28787 0.92792 0.95028 0.94783 1.74900 1.21087 1.09355 1.14210 1.78653 1.08079 1.21298 1.03400 1.78914 1.20108 0.90412 1.18836 1.22267 0.94534 0.87358 0.97527 1.22506 1.02646 0.97606 0.96647 0.93976 0.79591 0.95743 0.95242 0.92209 0.92729 0.92262 0.91313 0.90498 0.92202 0.90216 0.90525 0.89161 0.78305 0.80977 0.69077 0.88322 0.85193 0.91028 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.23 13.06 21.65 0.28 -58.94 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.98 45.12 29.55 68.60 2.03 47.15 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.75 -37.92 5.60 -343.46 -1.92 -39.84 16 10 C 0.15 5.81 6.26 86.38 0.54 6.35 16 11 C -0.11 -3.50 5.70 30.60 0.17 -3.32 16 12 C 0.08 1.67 5.75 71.98 0.41 2.08 16 13 O -0.40 -8.48 9.99 -148.98 -1.49 -9.97 16 14 C 0.08 1.00 2.57 30.62 0.08 1.07 16 15 C -0.13 -1.64 5.73 30.67 0.18 -1.47 16 16 C 0.12 1.31 6.43 86.36 0.56 1.87 16 17 N -0.60 -4.19 2.97 -818.07 -2.43 -6.62 16 18 C 0.50 5.31 7.72 87.65 0.68 5.99 16 19 O -0.57 -13.39 15.11 -3.04 -0.05 -13.44 16 20 C 0.09 0.03 5.31 85.63 0.45 0.49 16 21 N -0.30 -3.28 3.19 -355.56 -1.13 -4.41 16 22 C 0.18 1.59 12.79 180.27 2.31 3.89 16 23 N -0.35 -7.07 12.36 -60.30 -0.75 -7.81 16 24 N -0.12 -3.11 13.43 37.01 0.50 -2.62 16 25 N -0.10 -2.11 12.29 37.02 0.45 -1.66 16 26 C 0.10 -0.06 6.37 86.51 0.55 0.49 16 27 C -0.16 -0.89 5.71 30.82 0.18 -0.71 16 28 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 29 H 0.37 20.22 7.67 -92.71 -0.71 19.51 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.13 8.09 -2.39 -0.02 1.11 16 35 H 0.07 1.17 7.84 -2.39 -0.02 1.15 16 36 H 0.08 0.74 7.79 -2.39 -0.02 0.72 16 37 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.24 7.01 -2.39 -0.02 1.22 16 40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.20 -2.16 7.65 -2.39 -0.02 -2.17 16 42 H 0.17 -1.11 7.92 -2.39 -0.02 -1.13 16 43 H 0.29 -1.65 8.06 -2.91 -0.02 -1.67 16 44 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 45 H 0.13 -1.17 5.93 -2.39 -0.01 -1.18 16 46 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.09 0.42 7.84 -2.39 -0.02 0.40 16 Total: -1.00 -92.72 389.89 3.18 -89.54 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.27 Total: 8.80 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 7.41 Total: -0.18 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -5.00 Total: -121.91 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -1.53 Total: -23.40 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -92.72 3.18 -89.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485439178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.728 kcal (2) G-P(sol) polarization free energy of solvation -92.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds