Wall clock time and date at job start Tue Mar 31 2020 21:03:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42898 * 114.00185 * 2 1
4 4 C 1.53001 * 109.46929 * 54.66616 * 3 2 1
5 5 C 1.50695 * 109.47259 * 174.66798 * 3 2 1
6 6 O 1.21282 * 120.00187 * 145.00203 * 5 3 2
7 7 N 1.34785 * 120.00116 * 325.00210 * 5 3 2
8 8 C 1.46501 * 119.99586 * 0.02562 * 7 5 3
9 9 C 1.46491 * 120.00119 * 180.02562 * 7 5 3
10 10 C 1.52996 * 109.47395 * 89.99993 * 9 7 5
11 11 H 1.09005 * 109.47236 * 295.00028 * 10 9 7
12 12 C 1.53006 * 109.47229 * 174.99961 * 10 9 7
13 13 N 1.46503 * 109.47072 * 54.99786 * 10 9 7
14 14 C 1.36940 * 119.99687 * 205.00264 * 13 10 9
15 15 H 1.07994 * 120.00082 * 359.97438 * 14 13 10
16 16 C 1.38812 * 119.99467 * 180.02562 * 14 13 10
17 17 N 1.31623 * 119.99602 * 179.97438 * 16 14 13
18 18 Si 1.86801 * 120.00179 * 359.97438 * 16 14 13
19 19 H 1.48496 * 109.46839 * 90.00079 * 18 16 14
20 20 H 1.48499 * 109.46983 * 209.99928 * 18 16 14
21 21 H 1.48493 * 109.47049 * 329.99899 * 18 16 14
22 22 C 1.50697 * 109.47356 * 294.66986 * 3 2 1
23 23 C 1.38229 * 120.01297 * 355.03638 * 22 3 2
24 24 C 1.38223 * 120.02522 * 179.97438 * 23 22 3
25 25 C 1.38262 * 120.05320 * 0.02562 * 24 23 22
26 26 C 1.38178 * 120.02564 * 359.95529 * 25 24 23
27 27 C 1.38442 * 120.01746 * 175.27495 * 22 3 2
28 28 F 1.35105 * 120.01992 * 0.03730 * 27 22 3
29 29 H 1.08998 * 109.47239 * 51.59798 * 1 2 3
30 30 H 1.08998 * 109.47044 * 171.59720 * 1 2 3
31 31 H 1.09002 * 109.46462 * 291.59352 * 1 2 3
32 32 H 1.08994 * 109.47192 * 300.00244 * 4 3 2
33 33 H 1.08999 * 109.46802 * 60.00216 * 4 3 2
34 34 H 1.09000 * 109.47020 * 179.97438 * 4 3 2
35 35 H 1.08995 * 109.47346 * 89.99776 * 8 7 5
36 36 H 1.09006 * 109.46761 * 210.00319 * 8 7 5
37 37 H 1.09001 * 109.46968 * 329.99425 * 8 7 5
38 38 H 1.09007 * 109.47104 * 209.99836 * 9 7 5
39 39 H 1.09002 * 109.47440 * 329.99453 * 9 7 5
40 40 H 1.08995 * 109.46929 * 299.99640 * 12 10 9
41 41 H 1.08999 * 109.46926 * 60.00109 * 12 10 9
42 42 H 1.09000 * 109.46825 * 179.97438 * 12 10 9
43 43 H 0.96995 * 119.99903 * 25.00327 * 13 10 9
44 44 H 0.97003 * 119.99913 * 179.97438 * 17 16 14
45 45 H 1.07999 * 119.98022 * 359.96315 * 23 22 3
46 46 H 1.08003 * 119.97010 * 180.02562 * 24 23 22
47 47 H 1.07996 * 119.99046 * 179.97438 * 25 24 23
48 48 H 1.08004 * 120.01324 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 1.4556 2.1106 1.1768
5 6 3.5069 1.1889 0.1320
6 8 4.2294 1.9765 -0.4413
7 7 4.0427 0.2095 0.8873
8 6 3.1699 -0.7421 1.5793
9 6 5.4975 0.0966 1.0161
10 6 5.9696 0.9259 2.2119
11 1 5.7782 1.9818 2.0201
12 6 7.4696 0.7096 2.4224
13 7 5.2426 0.5083 3.4133
14 6 5.0884 1.3802 4.4580
15 1 5.5030 2.3755 4.3963
16 6 4.4001 0.9842 5.5965
17 7 4.2522 1.8221 6.6008
18 14 3.6835 -0.7376 5.7033
19 1 4.6896 -1.6565 6.2937
20 1 2.4700 -0.7165 6.5589
21 1 3.3215 -1.2083 4.3423
22 6 1.6729 2.0056 -1.2911
23 6 0.9952 1.3290 -2.2879
24 6 0.6852 1.9711 -3.4720
25 6 1.0528 3.2905 -3.6611
26 6 1.7300 3.9690 -2.6659
27 6 2.0459 3.3252 -1.4813
28 9 2.7132 3.9857 -0.5099
29 1 -0.3633 0.6383 -0.8053
30 1 -0.3633 -1.0166 -0.1502
31 1 -0.3632 0.3782 0.9556
32 1 0.3731 2.1949 1.0813
33 1 1.6997 1.6042 2.1107
34 1 1.8993 3.1062 1.1771
35 1 2.9780 -1.5970 0.9310
36 1 3.6557 -1.0817 2.4942
37 1 2.2267 -0.2556 1.8280
38 1 5.7688 -0.9481 1.1687
39 1 5.9726 0.4662 0.1073
40 1 7.6610 -0.3461 2.6143
41 1 8.0104 1.0204 1.5285
42 1 7.8059 1.3008 3.2741
43 1 4.8706 -0.3858 3.4688
44 1 3.7709 1.5456 7.3963
45 1 0.7081 0.2982 -2.1415
46 1 0.1553 1.4418 -4.2501
47 1 0.8104 3.7911 -4.5869
48 1 2.0168 4.9997 -2.8137
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001485885367.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:03:09
Heat of formation + Delta-G solvation = -52.905529 kcal
Electronic energy + Delta-G solvation = -32027.476294 eV
Core-core repulsion = 27806.071053 eV
Total energy + Delta-G solvation = -4221.405241 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-48.75841 -40.80012 -38.92435 -37.71941 -36.46053 -34.20836 -32.60304 -31.98334
-30.87171 -29.71119 -29.32117 -27.57358 -26.84392 -25.68796 -23.87270 -23.28397
-22.84863 -21.68045 -20.22648 -19.25727 -17.83837 -17.64186 -17.41585 -16.68565
-16.12834 -15.78093 -15.55613 -15.42582 -15.09672 -14.91692 -14.75681 -14.36798
-14.26499 -13.79519 -13.36380 -13.26496 -13.01736 -12.90075 -12.63360 -12.47553
-12.45707 -12.26980 -12.18400 -11.92103 -11.90966 -11.63487 -11.54156 -11.47872
-11.30853 -10.92442 -10.87055 -10.63658 -10.52506 -10.02291 -9.80586 -9.63409
-9.48703 -9.03329 -8.92894 -8.71044 -8.18993 -7.22344 -5.74096 -3.08663
0.98615 1.09381 2.73368 3.19025 3.29420 3.36343 3.43022 3.51186
3.61606 4.23071 4.36227 4.57543 4.58450 4.71399 4.76649 4.92460
5.09559 5.16275 5.21003 5.27231 5.29007 5.47646 5.50919 5.54116
5.61077 5.62398 5.64251 5.73122 5.76924 5.92704 5.95596 5.97753
6.07183 6.12340 6.19215 6.21526 6.22355 6.28140 6.34237 6.52839
6.74078 6.77535 6.83713 6.87150 7.11288 7.68470 8.04009 8.42279
8.44575 9.23219 9.95155 10.15736 11.44642
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.014933 B = 0.004148 C = 0.003890
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1874.592729 B = 6747.816474 C = 7196.235180
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.007 3.993
2 O -0.360 6.360
3 C 0.149 3.851
4 C -0.184 4.184
5 C 0.538 3.462
6 O -0.528 6.528
7 N -0.583 5.583
8 C 0.084 3.916
9 C 0.107 3.893
10 C 0.160 3.840
11 H 0.060 0.940
12 C -0.162 4.162
13 N -0.744 5.744
14 C -0.233 4.233
15 H 0.089 0.911
16 C 0.003 3.997
17 N -0.936 5.936
18 Si 0.877 3.123
19 H -0.286 1.286
20 H -0.293 1.293
21 H -0.271 1.271
22 C -0.139 4.139
23 C -0.081 4.081
24 C -0.142 4.142
25 C -0.087 4.087
26 C -0.163 4.163
27 C 0.146 3.854
28 F -0.120 7.120
29 H 0.056 0.944
30 H 0.090 0.910
31 H 0.050 0.950
32 H 0.071 0.929
33 H 0.086 0.914
34 H 0.087 0.913
35 H 0.052 0.948
36 H 0.072 0.928
37 H 0.080 0.920
38 H 0.072 0.928
39 H 0.083 0.917
40 H 0.045 0.955
41 H 0.041 0.959
42 H 0.060 0.940
43 H 0.358 0.642
44 H 0.258 0.742
45 H 0.140 0.860
46 H 0.128 0.872
47 H 0.130 0.870
48 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.797 -3.382 -20.439 22.917
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.089 4.089
2 O -0.279 6.279
3 C 0.106 3.894
4 C -0.241 4.241
5 C 0.324 3.676
6 O -0.405 6.405
7 N -0.314 5.314
8 C -0.059 4.059
9 C -0.016 4.016
10 C 0.050 3.950
11 H 0.078 0.922
12 C -0.222 4.222
13 N -0.389 5.389
14 C -0.363 4.363
15 H 0.106 0.894
16 C -0.193 4.193
17 N -0.584 5.584
18 Si 0.708 3.292
19 H -0.213 1.213
20 H -0.219 1.219
21 H -0.198 1.198
22 C -0.141 4.141
23 C -0.099 4.099
24 C -0.160 4.160
25 C -0.105 4.105
26 C -0.182 4.182
27 C 0.126 3.874
28 F -0.098 7.098
29 H 0.074 0.926
30 H 0.109 0.891
31 H 0.069 0.931
32 H 0.090 0.910
33 H 0.104 0.896
34 H 0.106 0.894
35 H 0.071 0.929
36 H 0.091 0.909
37 H 0.099 0.901
38 H 0.091 0.909
39 H 0.102 0.898
40 H 0.064 0.936
41 H 0.060 0.940
42 H 0.079 0.921
43 H 0.192 0.808
44 H 0.068 0.932
45 H 0.157 0.843
46 H 0.146 0.854
47 H 0.148 0.852
48 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -9.267 -2.926 -20.528 22.712
hybrid contribution -0.647 -0.949 0.601 1.296
sum -9.914 -3.875 -19.927 22.592
Atomic orbital electron populations
1.23124 0.81235 1.03096 1.01469 1.88171 1.20078 1.25078 1.94592
1.20307 0.92009 0.84367 0.92727 1.22543 1.01666 1.02436 0.97484
1.19617 0.88006 0.81026 0.78990 1.90714 1.60691 1.41357 1.47775
1.47470 1.07045 1.29592 1.47247 1.22149 0.94952 0.92324 0.96478
1.21922 0.79296 1.00586 0.99840 1.20630 0.90664 0.97898 0.85814
0.92193 1.22334 0.98041 1.01142 1.00728 1.42824 1.66095 1.14159
1.15803 1.19084 1.28843 0.95932 0.92478 0.89357 1.24639 1.00948
0.97245 0.96430 1.69704 1.47276 1.34719 1.06723 0.86737 0.79000
0.86170 0.77291 1.21298 1.21908 1.19802 1.20032 1.03052 0.93517
0.97499 1.21034 0.96579 1.00267 0.92033 1.21116 1.02158 0.95179
0.97515 1.21010 0.96699 0.94527 0.98308 1.21153 1.02591 1.01405
0.93072 1.17384 0.93369 0.89865 0.86785 1.91540 1.77407 1.80132
1.60706 0.92605 0.89123 0.93107 0.91018 0.89553 0.89403 0.92917
0.90938 0.90133 0.90926 0.89825 0.93584 0.93983 0.92088 0.80803
0.93209 0.84270 0.85390 0.85170 0.84660
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.06 9.06 101.05 0.92 0.98 16
2 O -0.36 -4.64 6.08 -35.23 -0.21 -4.86 16
3 C 0.15 2.24 0.43 -92.93 -0.04 2.20 16
4 C -0.18 -2.80 7.62 37.16 0.28 -2.52 16
5 C 0.54 9.81 6.52 -10.98 -0.07 9.74 16
6 O -0.53 -10.89 13.67 5.56 0.08 -10.82 16
7 N -0.58 -10.22 2.73 -181.57 -0.50 -10.71 16
8 C 0.08 1.34 8.65 59.85 0.52 1.86 16
9 C 0.11 1.83 5.05 -4.05 -0.02 1.81 16
10 C 0.16 3.22 3.20 -67.93 -0.22 3.00 16
11 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16
12 C -0.16 -2.91 9.49 37.16 0.35 -2.55 16
13 N -0.74 -17.25 4.37 -53.42 -0.23 -17.49 16
14 C -0.23 -6.52 10.41 -15.06 -0.16 -6.68 16
15 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16
16 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16
17 N -0.94 -29.27 13.97 55.49 0.78 -28.50 16
18 Si 0.88 21.30 27.74 -169.99 -4.71 16.59 16
19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
21 H -0.27 -5.85 4.90 56.52 0.28 -5.58 16
22 C -0.14 -1.94 4.29 -104.55 -0.45 -2.39 16
23 C -0.08 -0.90 7.64 -39.59 -0.30 -1.20 16
24 C -0.14 -1.30 10.04 -39.58 -0.40 -1.70 16
25 C -0.09 -0.81 10.04 -39.59 -0.40 -1.21 16
26 C -0.16 -1.90 10.03 -39.51 -0.40 -2.30 16
27 C 0.15 2.14 6.18 -39.42 -0.24 1.90 16
28 F -0.12 -2.08 13.15 2.25 0.03 -2.05 16
29 H 0.06 0.48 5.13 -51.93 -0.27 0.21 16
30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.05 0.47 6.84 -51.93 -0.36 0.12 16
32 H 0.07 0.89 6.67 -51.93 -0.35 0.54 16
33 H 0.09 1.45 6.84 -51.93 -0.36 1.09 16
34 H 0.09 1.48 5.95 -51.93 -0.31 1.17 16
35 H 0.05 0.73 7.89 -51.93 -0.41 0.32 16
36 H 0.07 1.27 3.94 -51.93 -0.20 1.07 16
37 H 0.08 1.29 4.52 -51.93 -0.23 1.05 16
38 H 0.07 1.09 8.07 -51.92 -0.42 0.68 16
39 H 0.08 1.40 7.42 -51.93 -0.39 1.02 16
40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16
43 H 0.36 7.96 3.49 -40.82 -0.14 7.82 16
44 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16
45 H 0.14 1.34 5.66 -52.49 -0.30 1.04 16
46 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16
47 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16
48 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16
LS Contribution 368.60 15.07 5.55 5.55
Total: -1.00 -33.69 368.60 -6.73 -40.42
By element:
Atomic # 1 Polarization: 17.73 SS G_CDS: -6.79 Total: 10.94 kcal
Atomic # 6 Polarization: 1.63 SS G_CDS: -0.72 Total: 0.91 kcal
Atomic # 7 Polarization: -56.74 SS G_CDS: 0.05 Total: -56.69 kcal
Atomic # 8 Polarization: -15.54 SS G_CDS: -0.14 Total: -15.68 kcal
Atomic # 9 Polarization: -2.08 SS G_CDS: 0.03 Total: -2.05 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.59 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -33.69 -6.73 -40.42 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485885367.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.484 kcal
(2) G-P(sol) polarization free energy of solvation -33.693 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.176 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.906 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds