Wall clock time and date at job start Tue Mar 31 2020 21:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99955 * 2 1 4 4 C 1.53006 * 109.46826 * 306.83308 * 3 2 1 5 5 C 1.50701 * 109.46911 * 186.83985 * 3 2 1 6 6 O 1.21274 * 120.00134 * 234.14891 * 5 3 2 7 7 N 1.34778 * 119.99940 * 53.87967 * 5 3 2 8 8 C 1.46506 * 120.00278 * 355.91517 * 7 5 3 9 9 C 1.46497 * 120.00185 * 175.92116 * 7 5 3 10 10 C 1.53004 * 109.47384 * 89.99493 * 9 7 5 11 11 H 1.09005 * 109.46874 * 65.00263 * 10 9 7 12 12 C 1.52995 * 109.47467 * 185.00309 * 10 9 7 13 13 N 1.46496 * 109.47029 * 305.00268 * 10 9 7 14 14 C 1.36938 * 119.99993 * 154.99815 * 13 10 9 15 15 H 1.08003 * 119.99979 * 359.97438 * 14 13 10 16 16 C 1.38814 * 120.00171 * 180.02562 * 14 13 10 17 17 N 1.31625 * 119.99990 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00227 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46828 * 59.99893 * 18 16 14 20 20 H 1.48494 * 109.47014 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46910 * 300.00071 * 18 16 14 22 22 C 1.50694 * 109.47470 * 66.83617 * 3 2 1 23 23 C 1.38216 * 120.01524 * 7.68199 * 22 3 2 24 24 C 1.38223 * 120.02866 * 179.97438 * 23 22 3 25 25 C 1.38270 * 120.04959 * 0.02562 * 24 23 22 26 26 C 1.38171 * 120.02395 * 359.97438 * 25 24 23 27 27 C 1.38444 * 120.01234 * 187.39953 * 22 3 2 28 28 F 1.35104 * 120.02547 * 0.02562 * 27 22 3 29 29 H 1.09001 * 109.47362 * 187.87621 * 1 2 3 30 30 H 1.09006 * 109.47487 * 307.87418 * 1 2 3 31 31 H 1.09002 * 109.47305 * 67.87616 * 1 2 3 32 32 H 1.08994 * 109.47217 * 300.00503 * 4 3 2 33 33 H 1.09003 * 109.46517 * 60.01001 * 4 3 2 34 34 H 1.09000 * 109.47056 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.46646 * 89.98431 * 8 7 5 36 36 H 1.08996 * 109.47223 * 209.98501 * 8 7 5 37 37 H 1.09004 * 109.46443 * 329.99087 * 8 7 5 38 38 H 1.08996 * 109.47777 * 209.99745 * 9 7 5 39 39 H 1.09005 * 109.47013 * 329.99672 * 9 7 5 40 40 H 1.09005 * 109.47111 * 60.00099 * 12 10 9 41 41 H 1.08996 * 109.47571 * 180.02562 * 12 10 9 42 42 H 1.09002 * 109.46915 * 299.99988 * 12 10 9 43 43 H 0.97002 * 120.00638 * 335.00286 * 13 10 9 44 44 H 0.96995 * 120.00062 * 180.02562 * 17 16 14 45 45 H 1.08002 * 119.98688 * 359.97438 * 23 22 3 46 46 H 1.08000 * 119.97202 * 179.97438 * 24 23 22 47 47 H 1.07998 * 119.98445 * 179.97438 * 25 24 23 48 48 H 1.07998 * 120.01063 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4276 2.1231 -1.1546 5 6 3.5033 1.1905 -0.1692 6 8 4.2466 1.7156 0.6323 7 7 4.0125 0.4996 -1.2083 8 6 3.1174 -0.2144 -2.1224 9 6 5.4610 0.4623 -1.4238 10 6 6.0584 -0.7279 -0.6704 11 1 5.6793 -1.6560 -1.0982 12 6 7.5831 -0.6955 -0.7923 13 7 5.6798 -0.6510 0.7427 14 6 5.6335 -1.7897 1.5021 15 1 5.8756 -2.7444 1.0590 16 6 5.2742 -1.7170 2.8409 17 7 4.9786 -0.5535 3.3808 18 14 5.2103 -3.2703 3.8766 19 1 6.5525 -3.9057 3.8992 20 1 4.8032 -2.9249 5.2622 21 1 4.2252 -4.2150 3.2916 22 6 1.7040 1.9917 1.3062 23 6 1.1010 1.2885 2.3320 24 6 0.8205 1.9176 3.5304 25 6 1.1422 3.2510 3.7043 26 6 1.7451 3.9560 2.6803 27 6 2.0319 3.3253 1.4813 28 9 2.6261 4.0124 0.4812 29 1 -0.3634 -1.0180 0.1408 30 1 -0.3634 0.6309 0.8112 31 1 -0.3634 0.3870 -0.9520 32 1 1.6490 1.6267 -2.0993 33 1 0.3476 2.2062 -1.0321 34 1 1.8712 3.1187 -1.1549 35 1 2.8290 0.4474 -2.9391 36 1 3.6309 -1.0871 -2.5259 37 1 2.2265 -0.5345 -1.5821 38 1 5.6675 0.3586 -2.4890 39 1 5.9070 1.3863 -1.0556 40 1 7.9622 0.2326 -0.3645 41 1 8.0086 -1.5436 -0.2559 42 1 7.8648 -0.7527 -1.8437 43 1 5.4618 0.2064 1.1406 44 1 4.7279 -0.5026 4.3164 45 1 0.8488 0.2470 2.1971 46 1 0.3489 1.3673 4.3311 47 1 0.9222 3.7416 4.6409 48 1 1.9959 4.9976 2.8163 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485885370.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:21 Heat of formation + Delta-G solvation = -78.028568 kcal Electronic energy + Delta-G solvation = -32638.135380 eV Core-core repulsion = 28415.640723 eV Total energy + Delta-G solvation = -4222.494658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.94254 -41.80104 -39.91485 -38.64993 -37.50810 -35.87505 -33.92198 -33.40549 -31.64998 -30.69599 -30.24370 -28.41231 -28.13215 -26.78243 -25.62172 -24.69597 -23.70301 -22.85009 -21.40861 -20.40294 -19.31074 -18.72713 -18.37075 -17.64684 -17.24383 -16.85133 -16.83020 -16.55652 -16.44708 -16.07312 -15.81207 -15.63203 -15.31302 -15.13735 -14.68401 -14.35042 -14.26401 -13.96390 -13.87233 -13.71364 -13.65517 -13.31718 -13.14255 -13.03592 -12.96364 -12.88866 -12.77522 -12.70705 -12.47185 -12.37230 -12.31871 -12.13186 -11.82569 -11.77657 -11.51764 -10.89172 -10.69394 -10.61687 -9.84255 -9.56949 -9.39110 -8.82474 -7.76000 -5.05198 0.20220 0.29121 1.42406 1.46370 1.51838 1.53347 2.21372 2.60816 2.67164 2.84939 3.33874 3.40788 3.50951 3.61770 3.83117 3.89341 4.02322 4.12525 4.21132 4.38031 4.40666 4.43248 4.50307 4.51681 4.54721 4.56981 4.62671 4.65190 4.74847 4.78060 4.83665 4.89228 4.93012 5.04595 5.10383 5.12498 5.16074 5.20350 5.27935 5.36258 5.47888 5.50109 5.56974 5.80904 5.97508 6.05859 6.40067 6.54824 7.34113 7.50289 8.35015 8.60233 9.43957 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009702 B = 0.006017 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.286674 B = 4652.464075 C = 5865.074007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.372 6.372 3 C 0.155 3.845 4 C -0.183 4.183 5 C 0.529 3.471 6 O -0.547 6.547 7 N -0.599 5.599 8 C 0.058 3.942 9 C 0.114 3.886 10 C 0.145 3.855 11 H 0.043 0.957 12 C -0.152 4.152 13 N -0.735 5.735 14 C -0.238 4.238 15 H 0.065 0.935 16 C -0.073 4.073 17 N -0.951 5.951 18 Si 0.962 3.038 19 H -0.283 1.283 20 H -0.297 1.297 21 H -0.280 1.280 22 C -0.141 4.141 23 C -0.084 4.084 24 C -0.137 4.137 25 C -0.085 4.085 26 C -0.167 4.167 27 C 0.104 3.896 28 F -0.144 7.144 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.055 0.945 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.080 0.920 43 H 0.386 0.614 44 H 0.242 0.758 45 H 0.130 0.870 46 H 0.149 0.851 47 H 0.165 0.835 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.670 6.456 -11.227 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.291 6.291 3 C 0.112 3.888 4 C -0.239 4.239 5 C 0.315 3.685 6 O -0.424 6.424 7 N -0.330 5.330 8 C -0.083 4.083 9 C -0.009 4.009 10 C 0.035 3.965 11 H 0.061 0.939 12 C -0.213 4.213 13 N -0.380 5.380 14 C -0.370 4.370 15 H 0.083 0.917 16 C -0.266 4.266 17 N -0.601 5.601 18 Si 0.792 3.208 19 H -0.210 1.210 20 H -0.224 1.224 21 H -0.206 1.206 22 C -0.143 4.143 23 C -0.102 4.102 24 C -0.155 4.155 25 C -0.103 4.103 26 C -0.186 4.186 27 C 0.085 3.915 28 F -0.122 7.122 29 H 0.121 0.879 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.137 0.863 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.099 0.901 43 H 0.224 0.776 44 H 0.051 0.949 45 H 0.148 0.852 46 H 0.167 0.833 47 H 0.183 0.817 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.155 6.432 -10.830 18.213 hybrid contribution 0.374 -0.419 1.028 1.171 sum -12.781 6.013 -9.803 17.193 Atomic orbital electron populations 1.23294 0.79242 1.04295 1.02214 1.88070 1.22134 1.24658 1.94211 1.20163 0.90329 0.85022 0.93244 1.22673 1.03030 1.00935 0.97310 1.20216 0.89491 0.78388 0.80369 1.90681 1.60684 1.48751 1.42245 1.47560 1.07214 1.49888 1.28387 1.22432 0.95595 0.96900 0.93371 1.21830 0.79727 0.98259 1.01080 1.20948 0.93469 0.96692 0.85394 0.93862 1.22248 0.97620 1.00227 1.01182 1.42979 1.81366 1.07547 1.06135 1.19487 1.37035 0.88339 0.92178 0.91699 1.25462 1.03772 0.98963 0.98357 1.69966 1.54214 1.24109 1.11796 0.85394 0.77699 0.79884 0.77850 1.20975 1.22390 1.20607 1.20046 1.03053 0.92992 0.98189 1.21061 0.96836 0.99725 0.92615 1.21477 1.01251 0.95634 0.97100 1.21368 0.95966 0.94046 0.98927 1.21381 1.02777 1.02279 0.92140 1.17614 0.96981 0.90024 0.86857 1.91377 1.81797 1.79380 1.59662 0.87857 0.92900 0.90933 0.88515 0.88809 0.90817 0.90414 0.90562 0.88705 0.86269 0.92660 0.94776 0.94680 0.90123 0.77612 0.94927 0.85183 0.83281 0.81748 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.10 9.11 113.37 1.03 1.13 16 2 O -0.37 -12.05 6.61 -148.98 -0.98 -13.03 16 3 C 0.16 5.32 0.43 -12.29 -0.01 5.32 16 4 C -0.18 -4.56 7.56 71.98 0.54 -4.02 16 5 C 0.53 22.38 5.78 87.66 0.51 22.89 16 6 O -0.55 -28.77 12.10 -3.01 -0.04 -28.80 16 7 N -0.60 -21.47 2.77 -846.74 -2.35 -23.82 16 8 C 0.06 1.51 8.99 127.77 1.15 2.66 16 9 C 0.11 4.06 5.14 86.38 0.44 4.51 16 10 C 0.14 6.15 3.20 44.99 0.14 6.30 16 11 H 0.04 1.82 8.08 -2.38 -0.02 1.80 16 12 C -0.15 -5.76 9.49 71.98 0.68 -5.08 16 13 N -0.73 -40.96 4.52 -322.94 -1.46 -42.42 16 14 C -0.24 -14.31 9.93 84.03 0.83 -13.47 16 15 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 16 C -0.07 -4.49 5.50 84.86 0.47 -4.02 16 17 N -0.95 -62.94 13.06 21.65 0.28 -62.66 16 18 Si 0.96 49.27 29.55 68.60 2.03 51.30 16 19 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 20 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 21 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 22 C -0.14 -5.17 3.99 -19.82 -0.08 -5.25 16 23 C -0.08 -2.95 7.70 22.26 0.17 -2.78 16 24 C -0.14 -4.07 10.04 22.27 0.22 -3.84 16 25 C -0.09 -2.30 10.04 22.26 0.22 -2.08 16 26 C -0.17 -5.07 10.03 22.31 0.22 -4.85 16 27 C 0.10 3.76 6.21 22.38 0.14 3.90 16 28 F -0.14 -5.27 13.85 44.97 0.62 -4.65 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.16 5.48 -2.38 -0.01 1.15 16 31 H 0.07 1.15 6.81 -2.39 -0.02 1.14 16 32 H 0.10 1.99 5.47 -2.39 -0.01 1.97 16 33 H 0.09 1.86 6.65 -2.39 -0.02 1.85 16 34 H 0.07 2.02 5.76 -2.39 -0.01 2.01 16 35 H 0.08 1.46 6.95 -2.39 -0.02 1.44 16 36 H 0.08 1.80 8.07 -2.39 -0.02 1.78 16 37 H 0.09 2.61 4.71 -2.39 -0.01 2.60 16 38 H 0.12 3.01 8.07 -2.39 -0.02 2.99 16 39 H 0.05 2.21 7.49 -2.38 -0.02 2.19 16 40 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.39 23.86 4.83 -92.71 -0.45 23.41 16 44 H 0.24 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.13 4.56 5.97 -2.91 -0.02 4.54 16 46 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 47 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 48 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -84.26 374.13 5.34 -78.92 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: 0.54 Total: 43.84 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 6.70 Total: 1.32 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -3.53 Total: -128.90 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.02 Total: -41.83 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.62 Total: -4.65 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.03 Total: 51.30 kcal Total: -84.26 5.34 -78.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485885370.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.888 kcal (2) G-P(sol) polarization free energy of solvation -84.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds