Wall clock time and date at job start Tue Mar 31 2020 21:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99610 * 2 1 4 4 H 1.07997 * 120.00287 * 200.32986 * 3 2 1 5 5 C 1.38816 * 120.00151 * 20.32790 * 3 2 1 6 6 N 1.31621 * 119.99676 * 15.00719 * 5 3 2 7 7 Si 1.86795 * 119.99987 * 195.00053 * 5 3 2 8 8 H 1.48499 * 109.46928 * 85.00834 * 7 5 3 9 9 H 1.48506 * 109.47113 * 205.00359 * 7 5 3 10 10 H 1.48500 * 109.47201 * 325.00636 * 7 5 3 11 11 C 1.46490 * 120.00193 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47158 * 269.99892 * 11 2 1 13 13 H 1.09008 * 109.46722 * 60.00388 * 12 11 2 14 14 O 1.42900 * 109.47259 * 300.00266 * 12 11 2 15 15 C 1.53002 * 109.47155 * 180.02562 * 12 11 2 16 16 N 1.46501 * 109.47091 * 185.00282 * 15 12 11 17 17 C 1.46497 * 120.00096 * 270.00099 * 16 15 12 18 18 C 1.34777 * 120.00085 * 89.99746 * 16 15 12 19 19 O 1.21283 * 119.99953 * 0.02562 * 18 16 15 20 20 C 1.50699 * 119.99941 * 180.02562 * 18 16 15 21 21 C 1.53004 * 109.46889 * 180.02562 * 20 18 16 22 22 C 1.50702 * 109.47019 * 180.02562 * 21 20 18 23 23 C 1.38247 * 119.97205 * 269.72581 * 22 21 20 24 24 C 1.38198 * 120.02747 * 179.72882 * 23 22 21 25 25 C 1.38458 * 119.97171 * 0.56039 * 24 23 22 26 26 F 1.35096 * 120.02404 * 179.68397 * 25 24 23 27 27 C 1.38460 * 119.94754 * 359.71126 * 25 24 23 28 28 C 1.38190 * 119.97654 * 359.97438 * 27 25 24 29 29 H 1.08993 * 109.47395 * 275.09704 * 1 2 3 30 30 H 1.09001 * 109.47152 * 35.10557 * 1 2 3 31 31 H 1.09001 * 109.46874 * 155.09726 * 1 2 3 32 32 H 0.97003 * 119.99307 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47441 * 150.00583 * 11 2 1 34 34 H 1.08997 * 109.47634 * 30.00397 * 11 2 1 35 35 H 0.96694 * 114.00030 * 299.99947 * 14 12 11 36 36 H 1.08997 * 109.47247 * 305.00057 * 15 12 11 37 37 H 1.08999 * 109.47193 * 65.00206 * 15 12 11 38 38 H 1.09005 * 109.47398 * 89.99781 * 17 16 15 39 39 H 1.08995 * 109.47478 * 209.99804 * 17 16 15 40 40 H 1.09002 * 109.47254 * 330.00181 * 17 16 15 41 41 H 1.08995 * 109.47127 * 300.00074 * 20 18 16 42 42 H 1.08991 * 109.47219 * 60.00352 * 20 18 16 43 43 H 1.09003 * 109.46920 * 299.99358 * 21 20 18 44 44 H 1.08991 * 109.47366 * 59.99874 * 21 20 18 45 45 H 1.08009 * 119.98230 * 359.97268 * 23 22 21 46 46 H 1.08003 * 120.01500 * 180.25403 * 24 23 22 47 47 H 1.07998 * 120.01203 * 179.97438 * 27 25 24 48 48 H 1.08007 * 119.98826 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1792 1.2152 -0.3249 5 6 1.5204 2.3507 0.4176 6 7 0.3871 2.2838 1.0836 7 14 2.2820 4.0127 0.0346 8 1 1.8681 4.4455 -1.3243 9 1 1.8214 5.0104 1.0335 10 1 3.7620 3.9036 0.0900 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7096 1.4433 13 1 1.5001 -1.8398 1.9572 14 8 3.2248 -0.7134 2.1165 15 6 3.2182 -3.0343 1.4439 16 7 3.3581 -3.5169 2.8200 17 6 4.5223 -3.1257 3.6187 18 6 2.4157 -4.3207 3.3514 19 8 1.4521 -4.6449 2.6902 20 6 2.5594 -4.8165 4.7672 21 6 1.3643 -5.7042 5.1204 22 6 1.5076 -6.1996 6.5364 23 6 2.1644 -7.3897 6.7886 24 6 2.3014 -7.8423 8.0872 25 6 1.7704 -7.1091 9.1349 26 9 1.8982 -7.5538 10.4041 27 6 1.1079 -5.9202 8.8805 28 6 0.9778 -5.4664 7.5818 29 1 -0.3634 0.0913 1.0235 30 1 -0.3633 0.8407 -0.5910 31 1 -0.3633 -0.9321 -0.4327 32 1 -0.0525 3.0978 1.3758 33 1 3.1500 -1.1385 -0.5132 34 1 1.6086 -2.0285 -0.5130 35 1 4.0872 -0.5450 1.7130 36 1 2.6713 -3.7704 0.8547 37 1 4.2064 -2.8830 1.0097 38 1 4.3003 -2.2045 4.1576 39 1 4.7562 -3.9163 4.3315 40 1 5.3766 -2.9649 2.9611 41 1 3.4796 -5.3935 4.8585 42 1 2.5946 -3.9663 5.4482 43 1 0.4438 -5.1275 5.0291 44 1 1.3294 -6.5545 4.4394 45 1 2.5741 -7.9640 5.9707 46 1 2.8182 -8.7699 8.2843 47 1 0.6929 -5.3477 9.6969 48 1 0.4614 -4.5388 7.3832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486338499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:17 Heat of formation + Delta-G solvation = -83.206527 kcal Electronic energy + Delta-G solvation = -28910.645430 eV Core-core repulsion = 24687.926239 eV Total energy + Delta-G solvation = -4222.719191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.18871 -40.11251 -39.32705 -37.30982 -35.30154 -34.39231 -34.06651 -31.47938 -31.36442 -30.26213 -29.09048 -26.81168 -26.03645 -25.66798 -24.11728 -23.39638 -22.07912 -21.27245 -20.40188 -19.06157 -17.99284 -17.19066 -16.83223 -16.78842 -16.13378 -15.98115 -15.87691 -15.61305 -15.10114 -14.74024 -14.49801 -14.32654 -14.25900 -13.87666 -13.62775 -13.55648 -13.31478 -13.13973 -12.93954 -12.69733 -12.63685 -12.40113 -12.00700 -11.79461 -11.69917 -11.49879 -11.36778 -11.12639 -11.08919 -10.82338 -10.60098 -10.44713 -10.24252 -9.97010 -9.83323 -9.80893 -9.52464 -9.46091 -8.85536 -8.48592 -8.32086 -6.67178 -5.62153 -3.04344 0.78359 0.88193 2.69499 3.03616 3.26945 3.43000 3.48225 3.50168 3.93805 4.30549 4.36714 4.54590 4.56986 4.73324 4.81279 4.87034 4.95030 5.03126 5.08911 5.10976 5.25960 5.35604 5.40317 5.48717 5.51803 5.56136 5.67171 5.68527 5.77694 5.78096 5.84408 5.89204 5.95893 5.98591 6.05834 6.12793 6.24822 6.48952 6.55363 6.61602 6.81157 6.88837 7.43052 7.44109 7.78545 7.87509 8.24612 8.42894 8.51230 9.31229 9.95098 10.43558 11.43832 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018374 B = 0.002033 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.560542 B =13768.599028 C =14236.417296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.592 5.592 3 C -0.240 4.240 4 H 0.066 0.934 5 C 0.000 4.000 6 N -0.906 5.906 7 Si 0.903 3.097 8 H -0.290 1.290 9 H -0.293 1.293 10 H -0.282 1.282 11 C 0.124 3.876 12 C 0.073 3.927 13 H 0.089 0.911 14 O -0.535 6.535 15 C 0.081 3.919 16 N -0.606 5.606 17 C 0.081 3.919 18 C 0.510 3.490 19 O -0.542 6.542 20 C -0.132 4.132 21 C -0.066 4.066 22 C -0.089 4.089 23 C -0.088 4.088 24 C -0.153 4.153 25 C 0.089 3.911 26 F -0.143 7.143 27 C -0.151 4.151 28 C -0.086 4.086 29 H 0.028 0.972 30 H 0.043 0.957 31 H -0.003 1.003 32 H 0.250 0.750 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.357 0.643 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 -20.030 11.939 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.313 5.313 3 C -0.369 4.369 4 H 0.084 0.916 5 C -0.198 4.198 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.218 1.218 9 H -0.219 1.219 10 H -0.207 1.207 11 C -0.005 4.005 12 C 0.009 3.991 13 H 0.107 0.893 14 O -0.337 6.337 15 C -0.042 4.042 16 N -0.339 5.339 17 C -0.062 4.062 18 C 0.298 3.702 19 O -0.419 6.419 20 C -0.172 4.172 21 C -0.104 4.104 22 C -0.089 4.089 23 C -0.106 4.106 24 C -0.171 4.171 25 C 0.070 3.930 26 F -0.121 7.121 27 C -0.169 4.169 28 C -0.104 4.104 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.015 0.985 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.201 0.799 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.153 0.847 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.470 -20.042 12.069 24.274 hybrid contribution 0.979 0.934 -0.026 1.353 sum 7.449 -19.109 12.043 23.784 Atomic orbital electron populations 1.20802 0.82475 0.95411 0.99470 1.43891 1.01825 1.00396 1.85204 1.19045 0.96681 0.84673 1.36532 0.91623 1.24938 0.97999 0.98194 0.98676 1.70094 1.18898 1.26450 1.39735 0.86299 0.78489 0.84431 0.77400 1.21754 1.21941 1.20749 1.21451 0.96452 0.89401 0.93213 1.23180 0.94066 0.84476 0.97347 0.89331 1.86685 1.32090 1.59817 1.55109 1.22465 1.01361 0.98380 0.82027 1.47782 1.22974 1.48498 1.14616 1.21806 0.87743 1.00767 0.95908 1.20592 0.82311 0.78331 0.88967 1.90708 1.30433 1.58200 1.62582 1.21668 1.00212 1.01052 0.94295 1.20361 0.98623 1.00073 0.91338 1.20036 0.98021 0.94929 0.95901 1.20961 0.97929 0.95750 0.95968 1.21142 1.02577 1.01158 0.92259 1.17749 1.01176 0.95067 0.78973 1.91496 1.94273 1.89190 1.37183 1.21179 1.01395 0.95885 0.98479 1.21032 0.98418 0.99784 0.91134 0.95324 0.93788 0.98458 0.93985 0.93676 0.93670 0.79875 0.89572 0.90815 0.91640 0.91663 0.91263 0.89013 0.88690 0.89691 0.89919 0.84935 0.84826 0.84702 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.19 9.02 59.85 0.54 4.73 16 2 N -0.59 -14.97 2.88 -181.12 -0.52 -15.49 16 3 C -0.24 -6.53 9.02 -15.06 -0.14 -6.67 16 4 H 0.07 1.73 7.86 -52.49 -0.41 1.31 16 5 C 0.00 -0.01 5.06 -17.43 -0.09 -0.09 16 6 N -0.91 -27.18 10.67 55.49 0.59 -26.58 16 7 Si 0.90 22.16 29.58 -169.99 -5.03 17.14 16 8 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 C 0.12 2.47 5.43 -4.05 -0.02 2.45 16 12 C 0.07 1.35 3.48 -26.73 -0.09 1.25 16 13 H 0.09 1.98 8.14 -51.92 -0.42 1.55 16 14 O -0.53 -10.49 12.16 -35.23 -0.43 -10.92 16 15 C 0.08 1.14 5.11 -4.04 -0.02 1.12 16 16 N -0.61 -7.73 2.84 -181.57 -0.52 -8.25 16 17 C 0.08 0.76 9.88 59.85 0.59 1.35 16 18 C 0.51 6.90 7.67 -10.99 -0.08 6.82 16 19 O -0.54 -9.39 15.56 5.55 0.09 -9.30 16 20 C -0.13 -1.24 4.24 -27.88 -0.12 -1.36 16 21 C -0.07 -0.62 4.63 -27.88 -0.13 -0.75 16 22 C -0.09 -0.74 5.13 -104.62 -0.54 -1.28 16 23 C -0.09 -0.66 9.70 -39.59 -0.38 -1.04 16 24 C -0.15 -1.19 10.03 -39.52 -0.40 -1.58 16 25 C 0.09 0.81 7.30 -39.42 -0.29 0.52 16 26 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 27 C -0.15 -1.26 10.03 -39.52 -0.40 -1.66 16 28 C -0.09 -0.71 9.70 -39.60 -0.38 -1.09 16 29 H 0.03 0.80 7.40 -51.93 -0.38 0.42 16 30 H 0.04 1.20 7.21 -51.93 -0.37 0.82 16 31 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 32 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 34 H 0.04 0.85 7.86 -51.93 -0.41 0.44 16 35 H 0.36 5.79 9.04 45.56 0.41 6.21 16 36 H 0.09 1.27 7.42 -51.93 -0.39 0.89 16 37 H 0.07 0.85 7.89 -51.93 -0.41 0.44 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.45 6.44 -51.93 -0.33 0.11 16 40 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 41 H 0.09 0.66 7.40 -51.93 -0.38 0.27 16 42 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 43 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 44 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 45 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 46 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 48 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 LS Contribution 401.01 15.07 6.04 6.04 Total: -1.00 -34.59 401.01 -8.52 -43.11 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.84 Total: 2.91 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -1.95 Total: 2.71 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.44 Total: -50.32 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.34 Total: -20.22 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.59 -8.52 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486338499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.094 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds