Wall clock time and date at job start Tue Mar 31 2020 21:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99610 * 2 1 4 4 H 1.07997 * 120.00287 * 200.32986 * 3 2 1 5 5 C 1.38816 * 120.00151 * 20.32790 * 3 2 1 6 6 N 1.31621 * 119.99676 * 15.00719 * 5 3 2 7 7 Si 1.86795 * 119.99987 * 195.00053 * 5 3 2 8 8 H 1.48499 * 109.46928 * 85.00834 * 7 5 3 9 9 H 1.48506 * 109.47113 * 205.00359 * 7 5 3 10 10 H 1.48500 * 109.47201 * 325.00636 * 7 5 3 11 11 C 1.46490 * 120.00193 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47158 * 269.99892 * 11 2 1 13 13 H 1.09008 * 109.46722 * 60.00388 * 12 11 2 14 14 O 1.42900 * 109.47259 * 300.00266 * 12 11 2 15 15 C 1.53002 * 109.47155 * 180.02562 * 12 11 2 16 16 N 1.46501 * 109.47091 * 185.00282 * 15 12 11 17 17 C 1.46497 * 120.00096 * 270.00099 * 16 15 12 18 18 C 1.34777 * 120.00085 * 89.99746 * 16 15 12 19 19 O 1.21283 * 119.99953 * 0.02562 * 18 16 15 20 20 C 1.50699 * 119.99941 * 180.02562 * 18 16 15 21 21 C 1.53004 * 109.46889 * 180.02562 * 20 18 16 22 22 C 1.50702 * 109.47019 * 180.02562 * 21 20 18 23 23 C 1.38247 * 119.97205 * 269.72581 * 22 21 20 24 24 C 1.38198 * 120.02747 * 179.72882 * 23 22 21 25 25 C 1.38458 * 119.97171 * 0.56039 * 24 23 22 26 26 F 1.35096 * 120.02404 * 179.68397 * 25 24 23 27 27 C 1.38460 * 119.94754 * 359.71126 * 25 24 23 28 28 C 1.38190 * 119.97654 * 359.97438 * 27 25 24 29 29 H 1.08993 * 109.47395 * 275.09704 * 1 2 3 30 30 H 1.09001 * 109.47152 * 35.10557 * 1 2 3 31 31 H 1.09001 * 109.46874 * 155.09726 * 1 2 3 32 32 H 0.97003 * 119.99307 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47441 * 150.00583 * 11 2 1 34 34 H 1.08997 * 109.47634 * 30.00397 * 11 2 1 35 35 H 0.96694 * 114.00030 * 299.99947 * 14 12 11 36 36 H 1.08997 * 109.47247 * 305.00057 * 15 12 11 37 37 H 1.08999 * 109.47193 * 65.00206 * 15 12 11 38 38 H 1.09005 * 109.47398 * 89.99781 * 17 16 15 39 39 H 1.08995 * 109.47478 * 209.99804 * 17 16 15 40 40 H 1.09002 * 109.47254 * 330.00181 * 17 16 15 41 41 H 1.08995 * 109.47127 * 300.00074 * 20 18 16 42 42 H 1.08991 * 109.47219 * 60.00352 * 20 18 16 43 43 H 1.09003 * 109.46920 * 299.99358 * 21 20 18 44 44 H 1.08991 * 109.47366 * 59.99874 * 21 20 18 45 45 H 1.08009 * 119.98230 * 359.97268 * 23 22 21 46 46 H 1.08003 * 120.01500 * 180.25403 * 24 23 22 47 47 H 1.07998 * 120.01203 * 179.97438 * 27 25 24 48 48 H 1.08007 * 119.98826 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1792 1.2152 -0.3249 5 6 1.5204 2.3507 0.4176 6 7 0.3871 2.2838 1.0836 7 14 2.2820 4.0127 0.0346 8 1 1.8681 4.4455 -1.3243 9 1 1.8214 5.0104 1.0335 10 1 3.7620 3.9036 0.0900 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7096 1.4433 13 1 1.5001 -1.8398 1.9572 14 8 3.2248 -0.7134 2.1165 15 6 3.2182 -3.0343 1.4439 16 7 3.3581 -3.5169 2.8200 17 6 4.5223 -3.1257 3.6187 18 6 2.4157 -4.3207 3.3514 19 8 1.4521 -4.6449 2.6902 20 6 2.5594 -4.8165 4.7672 21 6 1.3643 -5.7042 5.1204 22 6 1.5076 -6.1996 6.5364 23 6 2.1644 -7.3897 6.7886 24 6 2.3014 -7.8423 8.0872 25 6 1.7704 -7.1091 9.1349 26 9 1.8982 -7.5538 10.4041 27 6 1.1079 -5.9202 8.8805 28 6 0.9778 -5.4664 7.5818 29 1 -0.3634 0.0913 1.0235 30 1 -0.3633 0.8407 -0.5910 31 1 -0.3633 -0.9321 -0.4327 32 1 -0.0525 3.0978 1.3758 33 1 3.1500 -1.1385 -0.5132 34 1 1.6086 -2.0285 -0.5130 35 1 4.0872 -0.5450 1.7130 36 1 2.6713 -3.7704 0.8547 37 1 4.2064 -2.8830 1.0097 38 1 4.3003 -2.2045 4.1576 39 1 4.7562 -3.9163 4.3315 40 1 5.3766 -2.9649 2.9611 41 1 3.4796 -5.3935 4.8585 42 1 2.5946 -3.9663 5.4482 43 1 0.4438 -5.1275 5.0291 44 1 1.3294 -6.5545 4.4394 45 1 2.5741 -7.9640 5.9707 46 1 2.8182 -8.7699 8.2843 47 1 0.6929 -5.3477 9.6969 48 1 0.4614 -4.5388 7.3832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486338499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:16 Heat of formation + Delta-G solvation = -105.376805 kcal Electronic energy + Delta-G solvation = -28911.606805 eV Core-core repulsion = 24687.926239 eV Total energy + Delta-G solvation = -4223.680566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.88903 -41.09949 -40.04988 -38.81656 -36.82561 -35.87034 -34.85278 -33.27724 -32.07578 -31.49140 -30.13994 -28.10698 -27.74337 -27.00458 -25.19514 -23.99597 -23.57661 -22.17008 -21.99718 -20.07536 -18.78064 -18.64481 -18.15748 -17.55253 -17.47777 -16.99905 -16.62932 -16.55181 -16.45088 -16.23448 -15.94249 -15.54491 -15.20629 -15.02113 -14.82896 -14.56032 -14.40098 -14.27515 -14.04016 -13.74034 -13.64905 -13.54707 -13.24214 -13.05121 -12.82342 -12.72071 -12.49006 -12.42071 -12.40075 -12.20287 -12.14748 -12.00300 -11.86304 -11.80272 -11.77882 -11.14254 -10.80429 -10.54965 -10.05728 -9.53916 -9.51380 -8.70603 -7.74838 -5.18873 0.13524 0.28632 1.48397 1.50449 1.58052 1.66406 2.11408 2.56521 2.61805 3.30600 3.39757 3.51632 3.59249 3.76980 3.83635 3.96312 3.99372 4.06510 4.11559 4.21256 4.29018 4.36444 4.36833 4.45446 4.54197 4.60027 4.65581 4.74788 4.81583 4.82448 4.90402 4.94374 5.02479 5.04309 5.06663 5.17916 5.20638 5.25933 5.29226 5.31527 5.58683 5.60912 5.64825 5.71863 5.93913 6.36691 6.46257 7.11059 7.21206 7.22915 7.91741 8.36741 9.30751 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018374 B = 0.002033 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.560542 B =13768.599028 C =14236.417296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.610 5.610 3 C -0.234 4.234 4 H 0.080 0.920 5 C -0.065 4.065 6 N -0.946 5.946 7 Si 0.968 3.032 8 H -0.289 1.289 9 H -0.304 1.304 10 H -0.263 1.263 11 C 0.119 3.881 12 C 0.088 3.912 13 H 0.040 0.960 14 O -0.556 6.556 15 C 0.093 3.907 16 N -0.609 5.609 17 C 0.077 3.923 18 C 0.500 3.500 19 O -0.589 6.589 20 C -0.123 4.123 21 C -0.060 4.060 22 C -0.091 4.091 23 C -0.085 4.085 24 C -0.152 4.152 25 C 0.072 3.928 26 F -0.151 7.151 27 C -0.156 4.156 28 C -0.094 4.094 29 H -0.007 1.007 30 H 0.019 0.981 31 H 0.026 0.974 32 H 0.241 0.759 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.373 0.627 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.144 0.856 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.676 -21.390 11.766 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.332 5.332 3 C -0.364 4.364 4 H 0.098 0.902 5 C -0.258 4.258 6 N -0.594 5.594 7 Si 0.798 3.202 8 H -0.217 1.217 9 H -0.231 1.231 10 H -0.188 1.188 11 C -0.008 4.008 12 C 0.025 3.975 13 H 0.058 0.942 14 O -0.361 6.361 15 C -0.031 4.031 16 N -0.340 5.340 17 C -0.065 4.065 18 C 0.290 3.710 19 O -0.469 6.469 20 C -0.162 4.162 21 C -0.098 4.098 22 C -0.091 4.091 23 C -0.102 4.102 24 C -0.170 4.170 25 C 0.053 3.947 26 F -0.130 7.130 27 C -0.175 4.175 28 C -0.112 4.112 29 H 0.012 0.988 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.220 0.780 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.173 0.827 46 H 0.170 0.830 47 H 0.162 0.838 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.597 -21.431 11.897 26.323 hybrid contribution 0.048 1.278 0.011 1.279 sum 9.645 -20.152 11.909 25.317 Atomic orbital electron populations 1.20498 0.83465 0.95695 0.97098 1.44133 1.01723 1.01951 1.85365 1.19453 0.97008 0.85385 1.34538 0.90241 1.25754 0.98841 1.01784 0.99467 1.70298 1.20731 1.26556 1.41848 0.85253 0.78540 0.79944 0.76511 1.21677 1.23139 1.18800 1.21678 0.97135 0.87458 0.94527 1.22754 0.92942 0.86765 0.95041 0.94155 1.86645 1.33219 1.60482 1.55757 1.22189 1.02311 0.95256 0.83350 1.47915 1.23816 1.47842 1.14410 1.22028 0.86838 1.01183 0.96460 1.21373 0.81536 0.77894 0.90217 1.90685 1.32260 1.59982 1.64017 1.21675 1.01553 1.01571 0.91393 1.20242 0.97813 0.99710 0.92018 1.19982 0.98565 0.95495 0.95091 1.21180 0.97269 0.95296 0.96500 1.21376 1.02094 1.01595 0.91951 1.18010 1.02041 0.95678 0.79014 1.91472 1.94424 1.89316 1.37804 1.21317 1.01389 0.95987 0.98820 1.21140 0.98668 1.00161 0.91241 0.98841 0.96246 0.95603 0.94941 0.91163 0.92472 0.78010 0.90318 0.87191 0.93113 0.88618 0.89235 0.85802 0.87961 0.91837 0.90096 0.82748 0.82999 0.83809 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.38 9.02 127.77 1.15 10.53 16 2 N -0.61 -30.77 2.88 -726.95 -2.09 -32.86 16 3 C -0.23 -12.59 9.02 84.03 0.76 -11.83 16 4 H 0.08 4.00 7.86 -2.91 -0.02 3.97 16 5 C -0.06 -3.70 5.06 84.86 0.43 -3.27 16 6 N -0.95 -58.56 10.67 21.65 0.23 -58.33 16 7 Si 0.97 45.79 29.58 68.60 2.03 47.82 16 8 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 9 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 C 0.12 4.59 5.43 86.38 0.47 5.06 16 12 C 0.09 3.19 3.48 30.60 0.11 3.30 16 13 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 14 O -0.56 -21.21 12.16 -148.98 -1.81 -23.02 16 15 C 0.09 2.42 5.11 86.38 0.44 2.86 16 16 N -0.61 -14.28 2.84 -846.76 -2.40 -16.69 16 17 C 0.08 1.18 9.88 127.77 1.26 2.44 16 18 C 0.50 13.03 7.67 87.66 0.67 13.70 16 19 O -0.59 -20.62 15.56 -3.04 -0.05 -20.67 16 20 C -0.12 -2.06 4.24 29.85 0.13 -1.93 16 21 C -0.06 -1.07 4.63 29.85 0.14 -0.93 16 22 C -0.09 -1.39 5.13 -19.86 -0.10 -1.50 16 23 C -0.08 -1.06 9.70 22.26 0.22 -0.85 16 24 C -0.15 -2.05 10.03 22.31 0.22 -1.83 16 25 C 0.07 1.21 7.30 22.38 0.16 1.38 16 26 F -0.15 -2.89 17.27 44.97 0.78 -2.11 16 27 C -0.16 -2.51 10.03 22.31 0.22 -2.28 16 28 C -0.09 -1.50 9.70 22.26 0.22 -1.28 16 29 H -0.01 -0.40 7.40 -2.39 -0.02 -0.42 16 30 H 0.02 1.07 7.21 -2.39 -0.02 1.06 16 31 H 0.03 1.17 7.84 -2.39 -0.02 1.15 16 32 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.07 2.37 8.03 -2.38 -0.02 2.35 16 34 H 0.06 2.06 7.86 -2.39 -0.02 2.04 16 35 H 0.37 11.20 9.04 -74.06 -0.67 10.53 16 36 H 0.08 2.21 7.42 -2.39 -0.02 2.19 16 37 H 0.11 2.08 7.89 -2.39 -0.02 2.06 16 38 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.10 0.89 6.44 -2.39 -0.02 0.88 16 40 H 0.09 1.04 7.89 -2.39 -0.02 1.02 16 41 H 0.12 1.30 7.40 -2.39 -0.02 1.28 16 42 H 0.10 1.61 8.11 -2.39 -0.02 1.59 16 43 H 0.06 1.40 8.04 -2.39 -0.02 1.38 16 44 H 0.08 1.47 8.04 -2.39 -0.02 1.45 16 45 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 46 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 47 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 48 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -77.78 401.01 3.47 -74.31 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.29 Total: 17.99 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.50 Total: 13.57 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.26 Total: -107.87 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -1.86 Total: -43.69 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -77.78 3.47 -74.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486338499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.071 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds