Wall clock time and date at job start Tue Mar 31 2020 21:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35953 * 117.00009 * 2 1 4 4 C 1.38664 * 120.06424 * 359.72076 * 3 2 1 5 5 C 1.38183 * 119.97070 * 180.28091 * 4 3 2 6 6 C 1.38263 * 120.09598 * 359.97407 * 5 4 3 7 7 C 1.50698 * 119.93878 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47350 * 270.02845 * 7 6 5 9 9 C 1.50707 * 109.46949 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99813 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00007 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00241 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47331 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46817 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.46688 * 180.02562 * 14 13 12 16 16 C 1.46497 * 120.00035 * 270.00164 * 15 14 13 17 17 C 1.36933 * 119.99957 * 90.00080 * 15 14 13 18 18 H 1.08002 * 120.00137 * 22.34118 * 17 15 14 19 19 C 1.38813 * 120.00040 * 202.34273 * 17 15 14 20 20 N 1.31615 * 119.99978 * 11.35637 * 19 17 15 21 21 Si 1.86798 * 119.99924 * 191.35591 * 19 17 15 22 22 H 1.48501 * 109.47394 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47160 * 119.99750 * 21 19 17 24 24 H 1.48498 * 109.47265 * 239.99995 * 21 19 17 25 25 C 1.38260 * 120.12615 * 0.04859 * 6 5 4 26 26 C 1.38332 * 120.02690 * 359.95512 * 25 6 5 27 27 F 1.35103 * 120.04287 * 180.02562 * 26 25 6 28 28 H 1.08998 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47124 * 300.00581 * 1 2 3 30 30 H 1.09000 * 109.47553 * 59.99980 * 1 2 3 31 31 H 1.08002 * 120.01274 * 0.25651 * 4 3 2 32 32 H 1.08000 * 119.95158 * 179.97438 * 5 4 3 33 33 H 1.09008 * 109.46599 * 30.02546 * 7 6 5 34 34 H 1.08997 * 109.47341 * 150.02166 * 7 6 5 35 35 H 1.08991 * 109.46827 * 299.99410 * 8 7 6 36 36 H 1.08992 * 109.47154 * 60.00055 * 8 7 6 37 37 H 0.97003 * 119.99674 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47223 * 300.00132 * 12 11 9 39 39 H 1.09005 * 109.47339 * 59.99925 * 12 11 9 40 40 H 1.08991 * 109.47042 * 299.99850 * 13 12 11 41 41 H 1.09000 * 109.46513 * 60.00462 * 13 12 11 42 42 H 1.08991 * 109.47297 * 299.99823 * 14 13 12 43 43 H 1.08992 * 109.47004 * 60.00665 * 14 13 12 44 44 H 1.09004 * 109.47077 * 94.20547 * 16 15 14 45 45 H 1.08998 * 109.47143 * 214.20757 * 16 15 14 46 46 H 1.09002 * 109.47240 * 334.21098 * 16 15 14 47 47 H 0.96997 * 120.00254 * 180.02562 * 20 19 17 48 48 H 1.07993 * 119.98559 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0058 5 6 1.9216 3.6053 -0.0117 6 6 3.3023 3.6777 -0.0112 7 6 3.9850 5.0212 -0.0170 8 6 4.2163 5.4695 -1.4614 9 6 4.8985 6.8133 -1.4672 10 8 5.1722 7.3589 -0.4191 11 7 5.2043 7.4088 -2.6369 12 6 5.8669 8.7154 -2.6425 13 6 6.0995 9.1631 -4.0869 14 6 6.7909 10.5280 -4.0926 15 7 7.0131 10.9570 -5.4758 16 6 8.2559 10.5981 -6.1633 17 6 6.0590 11.6934 -6.1258 18 1 5.3347 12.2595 -5.5590 19 6 6.0228 11.7123 -7.5133 20 7 6.7502 10.8588 -8.2023 21 14 4.9416 12.9490 -8.4027 22 1 4.2290 13.7896 -7.4072 23 1 5.7855 13.8129 -9.2670 24 1 3.9505 12.2276 -9.2407 25 6 4.0579 2.5198 -0.0059 26 6 3.4333 1.2856 -0.0001 27 9 4.1713 0.1540 0.0057 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2136 2.3201 -0.0062 32 1 1.3341 4.5115 -0.0167 33 1 3.3560 5.7505 0.4935 34 1 4.9429 4.9442 0.4974 35 1 4.8453 4.7403 -1.9719 36 1 3.2585 5.5465 -1.9758 37 1 4.9857 6.9723 -3.4751 38 1 5.2370 9.4444 -2.1327 39 1 6.8246 8.6394 -2.1274 40 1 6.7295 8.4341 -4.5963 41 1 5.1420 9.2391 -4.6023 42 1 6.1605 11.2568 -3.5834 43 1 7.7483 10.4524 -3.5771 44 1 8.1040 9.6816 -6.7336 45 1 8.5426 11.4035 -6.8395 46 1 9.0457 10.4421 -5.4285 47 1 6.7253 10.8722 -9.1719 48 1 5.1362 2.5790 -0.0059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490225318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:19 Heat of formation + Delta-G solvation = -86.526156 kcal Electronic energy + Delta-G solvation = -27545.537198 eV Core-core repulsion = 23322.674057 eV Total energy + Delta-G solvation = -4222.863141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.09503 -40.53355 -39.67942 -38.21541 -36.27124 -34.76014 -33.78958 -32.00227 -31.16656 -30.32888 -29.47437 -27.82806 -26.02706 -25.59922 -24.20903 -23.20998 -21.98783 -21.41950 -20.65155 -19.84092 -18.75132 -17.42309 -17.33814 -16.77915 -16.71108 -16.55450 -15.82871 -15.79042 -15.42702 -15.24829 -14.80128 -14.74343 -14.63171 -14.43839 -13.80787 -13.62755 -13.30172 -13.11702 -13.03663 -12.80172 -12.61740 -12.57259 -12.35359 -11.86261 -11.63745 -11.57083 -11.37892 -11.28935 -11.25082 -11.07034 -10.85422 -10.74670 -10.48065 -10.08636 -9.96318 -9.81074 -9.74927 -9.35754 -8.92793 -8.56911 -8.52153 -6.77903 -5.74016 -3.19716 0.69969 0.78130 2.66903 2.67213 3.05006 3.31803 3.36531 3.43431 3.45320 3.81173 4.22174 4.29930 4.48486 4.49422 4.64336 4.69168 4.73254 4.80098 4.88167 4.96925 4.99513 5.08871 5.26917 5.35935 5.44710 5.45388 5.49454 5.53332 5.64614 5.73732 5.84709 5.86383 5.94814 6.12435 6.13926 6.20774 6.24355 6.43366 6.61556 6.75984 6.80866 6.82167 7.00191 7.38608 7.58707 7.72244 7.80273 8.26875 8.39086 9.23041 9.86422 10.35224 11.31175 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.001559 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.266705 B =17950.530983 C =18488.481873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.089 3.911 4 C -0.179 4.179 5 C -0.084 4.084 6 C -0.088 4.088 7 C -0.061 4.061 8 C -0.137 4.137 9 C 0.508 3.492 10 O -0.548 6.548 11 N -0.726 5.726 12 C 0.119 3.881 13 C -0.150 4.150 14 C 0.156 3.844 15 N -0.603 5.603 16 C 0.164 3.836 17 C -0.252 4.252 18 H 0.069 0.931 19 C 0.000 4.000 20 N -0.909 5.909 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C -0.112 4.112 26 C 0.071 3.929 27 F -0.133 7.133 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.401 0.599 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.039 0.961 44 H 0.027 0.973 45 H 0.044 0.956 46 H -0.004 1.004 47 H 0.251 0.749 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.295 -20.614 17.102 29.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.043 3.957 4 C -0.198 4.198 5 C -0.103 4.103 6 C -0.088 4.088 7 C -0.099 4.099 8 C -0.178 4.178 9 C 0.294 3.706 10 O -0.426 6.426 11 N -0.377 5.377 12 C -0.005 4.005 13 C -0.191 4.191 14 C 0.028 3.972 15 N -0.325 5.325 16 C 0.019 3.981 17 C -0.382 4.382 18 H 0.087 0.913 19 C -0.198 4.198 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C -0.131 4.131 26 C 0.051 3.949 27 F -0.112 7.112 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.235 0.765 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.015 0.985 47 H 0.062 0.938 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.941 -20.430 17.654 29.133 hybrid contribution -0.906 0.158 -1.198 1.511 sum -11.847 -20.272 16.455 28.672 Atomic orbital electron populations 1.23125 0.77829 1.04350 1.01572 1.86136 1.21798 1.25830 1.88741 1.19027 0.90851 0.85694 1.00139 1.21149 1.00339 0.91422 1.06871 1.20974 0.93962 0.97395 0.97920 1.19697 0.93337 0.94834 1.00945 1.20295 1.01721 0.92128 0.95751 1.21682 1.02302 0.94925 0.98847 1.20637 0.78939 0.87140 0.83863 1.90696 1.54209 1.66108 1.31566 1.46214 1.61134 1.21938 1.08448 1.21506 0.96823 0.83072 0.99068 1.22549 1.02662 1.01056 0.92826 1.20718 0.96879 0.92067 0.87550 1.43989 1.17166 1.61540 1.09845 1.20797 0.84309 0.99959 0.93038 1.19280 1.09562 1.20288 0.89085 0.91312 1.25034 0.99377 0.98561 0.96858 1.70074 1.43448 1.36296 1.05678 0.86187 0.79868 0.80828 0.79686 1.20322 1.21623 1.21780 1.20967 1.01205 0.89664 1.01221 1.16965 0.85934 0.83018 1.08965 1.91508 1.76383 1.49013 1.94256 0.87915 0.92398 0.92324 0.84427 0.84777 0.89706 0.89811 0.88709 0.88695 0.76469 0.91838 0.92002 0.92189 0.91338 0.93641 0.94282 0.95454 0.93703 0.98508 0.93837 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.80 10.36 -19.59 -0.20 -3.00 16 3 C 0.09 0.81 6.69 -39.18 -0.26 0.55 16 4 C -0.18 -1.25 9.04 -39.44 -0.36 -1.60 16 5 C -0.08 -0.58 9.69 -39.59 -0.38 -0.97 16 6 C -0.09 -0.68 5.13 -104.61 -0.54 -1.22 16 7 C -0.06 -0.50 4.63 -27.88 -0.13 -0.63 16 8 C -0.14 -1.13 5.68 -27.88 -0.16 -1.29 16 9 C 0.51 6.25 7.83 -10.98 -0.09 6.16 16 10 O -0.55 -8.78 15.98 5.56 0.09 -8.69 16 11 N -0.73 -8.95 5.56 -60.29 -0.33 -9.29 16 12 C 0.12 1.73 5.67 -4.04 -0.02 1.71 16 13 C -0.15 -2.58 5.65 -26.73 -0.15 -2.73 16 14 C 0.16 3.10 5.71 -4.04 -0.02 3.07 16 15 N -0.60 -14.97 2.93 -181.12 -0.53 -15.50 16 16 C 0.16 4.01 9.01 59.85 0.54 4.55 16 17 C -0.25 -6.85 9.67 -15.06 -0.15 -7.00 16 18 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 19 C 0.00 -0.01 5.13 -17.43 -0.09 -0.10 16 20 N -0.91 -26.22 10.59 55.49 0.59 -25.64 16 21 Si 0.90 21.63 29.57 -169.99 -5.03 16.61 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C -0.11 -0.94 9.67 -39.54 -0.38 -1.32 16 26 C 0.07 0.71 7.31 -39.30 -0.29 0.42 16 27 F -0.13 -1.52 17.11 2.25 0.04 -1.48 16 28 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.19 7.67 -51.93 -0.40 -0.21 16 30 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 31 H 0.14 0.63 6.30 -52.49 -0.33 0.29 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 33 H 0.08 0.73 8.04 -51.92 -0.42 0.31 16 34 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.40 4.15 8.47 -40.82 -0.35 3.80 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.05 0.88 8.03 -51.93 -0.42 0.47 16 43 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 44 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 45 H 0.04 1.18 7.19 -51.93 -0.37 0.81 16 46 H 0.00 -0.08 7.85 -51.93 -0.41 -0.49 16 47 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 403.54 15.07 6.08 6.08 Total: -1.00 -33.43 403.54 -8.43 -41.86 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.65 Total: -1.67 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.48 Total: 0.71 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.28 Total: -50.42 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.11 Total: -11.70 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.43 -8.43 -41.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490225318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.666 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds