Wall clock time and date at job start Tue Mar 31 2020 21:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35953 * 117.00009 * 2 1 4 4 C 1.38664 * 120.06424 * 359.72076 * 3 2 1 5 5 C 1.38183 * 119.97070 * 180.28091 * 4 3 2 6 6 C 1.38263 * 120.09598 * 359.97407 * 5 4 3 7 7 C 1.50698 * 119.93878 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47350 * 270.02845 * 7 6 5 9 9 C 1.50707 * 109.46949 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99813 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00007 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00241 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47331 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46817 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.46688 * 180.02562 * 14 13 12 16 16 C 1.46497 * 120.00035 * 270.00164 * 15 14 13 17 17 C 1.36933 * 119.99957 * 90.00080 * 15 14 13 18 18 H 1.08002 * 120.00137 * 22.34118 * 17 15 14 19 19 C 1.38813 * 120.00040 * 202.34273 * 17 15 14 20 20 N 1.31615 * 119.99978 * 11.35637 * 19 17 15 21 21 Si 1.86798 * 119.99924 * 191.35591 * 19 17 15 22 22 H 1.48501 * 109.47394 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47160 * 119.99750 * 21 19 17 24 24 H 1.48498 * 109.47265 * 239.99995 * 21 19 17 25 25 C 1.38260 * 120.12615 * 0.04859 * 6 5 4 26 26 C 1.38332 * 120.02690 * 359.95512 * 25 6 5 27 27 F 1.35103 * 120.04287 * 180.02562 * 26 25 6 28 28 H 1.08998 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47124 * 300.00581 * 1 2 3 30 30 H 1.09000 * 109.47553 * 59.99980 * 1 2 3 31 31 H 1.08002 * 120.01274 * 0.25651 * 4 3 2 32 32 H 1.08000 * 119.95158 * 179.97438 * 5 4 3 33 33 H 1.09008 * 109.46599 * 30.02546 * 7 6 5 34 34 H 1.08997 * 109.47341 * 150.02166 * 7 6 5 35 35 H 1.08991 * 109.46827 * 299.99410 * 8 7 6 36 36 H 1.08992 * 109.47154 * 60.00055 * 8 7 6 37 37 H 0.97003 * 119.99674 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47223 * 300.00132 * 12 11 9 39 39 H 1.09005 * 109.47339 * 59.99925 * 12 11 9 40 40 H 1.08991 * 109.47042 * 299.99850 * 13 12 11 41 41 H 1.09000 * 109.46513 * 60.00462 * 13 12 11 42 42 H 1.08991 * 109.47297 * 299.99823 * 14 13 12 43 43 H 1.08992 * 109.47004 * 60.00665 * 14 13 12 44 44 H 1.09004 * 109.47077 * 94.20547 * 16 15 14 45 45 H 1.08998 * 109.47143 * 214.20757 * 16 15 14 46 46 H 1.09002 * 109.47240 * 334.21098 * 16 15 14 47 47 H 0.96997 * 120.00254 * 180.02562 * 20 19 17 48 48 H 1.07993 * 119.98559 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0058 5 6 1.9216 3.6053 -0.0117 6 6 3.3023 3.6777 -0.0112 7 6 3.9850 5.0212 -0.0170 8 6 4.2163 5.4695 -1.4614 9 6 4.8985 6.8133 -1.4672 10 8 5.1722 7.3589 -0.4191 11 7 5.2043 7.4088 -2.6369 12 6 5.8669 8.7154 -2.6425 13 6 6.0995 9.1631 -4.0869 14 6 6.7909 10.5280 -4.0926 15 7 7.0131 10.9570 -5.4758 16 6 8.2559 10.5981 -6.1633 17 6 6.0590 11.6934 -6.1258 18 1 5.3347 12.2595 -5.5590 19 6 6.0228 11.7123 -7.5133 20 7 6.7502 10.8588 -8.2023 21 14 4.9416 12.9490 -8.4027 22 1 4.2290 13.7896 -7.4072 23 1 5.7855 13.8129 -9.2670 24 1 3.9505 12.2276 -9.2407 25 6 4.0579 2.5198 -0.0059 26 6 3.4333 1.2856 -0.0001 27 9 4.1713 0.1540 0.0057 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2136 2.3201 -0.0062 32 1 1.3341 4.5115 -0.0167 33 1 3.3560 5.7505 0.4935 34 1 4.9429 4.9442 0.4974 35 1 4.8453 4.7403 -1.9719 36 1 3.2585 5.5465 -1.9758 37 1 4.9857 6.9723 -3.4751 38 1 5.2370 9.4444 -2.1327 39 1 6.8246 8.6394 -2.1274 40 1 6.7295 8.4341 -4.5963 41 1 5.1420 9.2391 -4.6023 42 1 6.1605 11.2568 -3.5834 43 1 7.7483 10.4524 -3.5771 44 1 8.1040 9.6816 -6.7336 45 1 8.5426 11.4035 -6.8395 46 1 9.0457 10.4421 -5.4285 47 1 6.7253 10.8722 -9.1719 48 1 5.1362 2.5790 -0.0059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490225318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:19 Heat of formation + Delta-G solvation = -106.656386 kcal Electronic energy + Delta-G solvation = -27546.410110 eV Core-core repulsion = 23322.674057 eV Total energy + Delta-G solvation = -4223.736053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.84893 -41.13888 -40.63555 -38.82324 -37.93526 -36.14633 -34.49924 -33.70554 -31.80172 -31.72351 -30.31910 -28.34191 -27.93130 -26.99423 -25.19671 -23.78491 -23.44119 -22.20275 -22.05995 -20.99683 -19.30863 -18.75465 -18.18120 -17.98450 -17.52630 -17.17873 -17.09534 -16.81990 -16.51937 -16.05873 -15.91332 -15.81155 -15.46314 -15.20137 -15.08613 -14.96062 -14.60702 -14.34535 -14.26634 -13.69382 -13.61908 -13.25156 -13.06149 -12.98989 -12.88051 -12.76469 -12.70314 -12.44127 -12.41753 -12.25438 -12.12924 -11.99215 -11.88590 -11.87168 -11.83619 -11.44410 -10.88357 -10.63513 -10.02394 -9.94843 -9.13463 -8.78601 -7.81678 -5.29391 0.11086 0.18482 1.46646 1.48683 1.58497 1.70996 2.19672 2.26525 2.52049 2.56145 3.20144 3.33025 3.61569 3.68841 3.73602 3.92556 4.06015 4.14810 4.18706 4.27753 4.29484 4.36444 4.38334 4.40456 4.52205 4.53362 4.68661 4.71867 4.73111 4.82936 4.86667 4.90479 4.91845 4.95879 5.09288 5.17712 5.22343 5.32823 5.34164 5.45403 5.54416 5.54642 5.66116 5.66244 5.74774 6.28293 6.35050 6.62322 7.17142 7.30741 7.89414 8.32671 9.22154 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.001559 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.266705 B =17950.530983 C =18488.481873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.079 3.921 4 C -0.175 4.175 5 C -0.079 4.079 6 C -0.089 4.089 7 C -0.055 4.055 8 C -0.128 4.128 9 C 0.508 3.492 10 O -0.587 6.587 11 N -0.723 5.723 12 C 0.132 3.868 13 C -0.129 4.129 14 C 0.150 3.850 15 N -0.621 5.621 16 C 0.177 3.823 17 C -0.259 4.259 18 H 0.071 0.929 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.293 1.293 24 H -0.292 1.292 25 C -0.113 4.113 26 C 0.038 3.962 27 F -0.150 7.150 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.412 0.588 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.004 0.996 45 H 0.016 0.984 46 H 0.029 0.971 47 H 0.247 0.753 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.088 -20.629 17.834 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.033 3.967 4 C -0.194 4.194 5 C -0.097 4.097 6 C -0.090 4.090 7 C -0.093 4.093 8 C -0.168 4.168 9 C 0.296 3.704 10 O -0.468 6.468 11 N -0.375 5.375 12 C 0.008 3.992 13 C -0.170 4.170 14 C 0.023 3.977 15 N -0.344 5.344 16 C 0.032 3.968 17 C -0.390 4.390 18 H 0.089 0.911 19 C -0.249 4.249 20 N -0.587 5.587 21 Si 0.795 3.205 22 H -0.191 1.191 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.132 4.132 26 C 0.019 3.981 27 F -0.129 7.129 28 H 0.135 0.865 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.182 0.818 32 H 0.175 0.825 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.248 0.752 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.023 0.977 45 H 0.034 0.966 46 H 0.047 0.953 47 H 0.056 0.944 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.756 -20.464 18.407 30.336 hybrid contribution -0.368 0.149 -1.339 1.396 sum -13.123 -20.315 17.069 29.601 Atomic orbital electron populations 1.23423 0.75708 1.05817 1.02791 1.86104 1.24123 1.26203 1.88764 1.19253 0.90778 0.86533 1.00144 1.21433 1.01562 0.90581 1.05777 1.21279 0.93726 0.98277 0.96405 1.19656 0.93792 0.94114 1.01403 1.20199 1.01257 0.92224 0.95589 1.21695 1.03183 0.92531 0.99365 1.21296 0.78144 0.88069 0.82884 1.90684 1.55838 1.67384 1.32869 1.46130 1.60849 1.21165 1.09343 1.21177 0.97064 0.84222 0.96769 1.22184 1.01114 0.99360 0.94312 1.20903 0.98348 0.93338 0.85103 1.44221 1.16888 1.61944 1.11313 1.20551 0.85333 0.97694 0.93241 1.19588 1.09555 1.20306 0.89510 0.91095 1.25767 1.01062 1.00410 0.97685 1.70231 1.45107 1.37874 1.05460 0.85204 0.78126 0.78682 0.78449 1.19104 1.21999 1.21882 1.21071 1.01723 0.89467 1.00928 1.17326 0.86679 0.83013 1.11113 1.91452 1.76865 1.49939 1.94638 0.86529 0.91059 0.91089 0.81829 0.82494 0.89940 0.90820 0.87032 0.86434 0.75164 0.92287 0.91979 0.92787 0.93075 0.93275 0.92353 0.97725 0.96552 0.95254 0.94358 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.34 -5.85 10.36 -93.03 -0.96 -6.81 16 3 C 0.08 1.37 6.69 22.53 0.15 1.52 16 4 C -0.18 -2.03 9.04 22.36 0.20 -1.83 16 5 C -0.08 -0.87 9.69 22.26 0.22 -0.66 16 6 C -0.09 -1.22 5.13 -19.85 -0.10 -1.32 16 7 C -0.05 -0.80 4.63 29.85 0.14 -0.66 16 8 C -0.13 -1.78 5.68 29.85 0.17 -1.61 16 9 C 0.51 11.55 7.83 87.66 0.69 12.23 16 10 O -0.59 -18.14 15.98 -3.03 -0.05 -18.19 16 11 N -0.72 -16.46 5.56 -463.06 -2.57 -19.03 16 12 C 0.13 3.65 5.67 86.38 0.49 4.14 16 13 C -0.13 -4.29 5.65 30.60 0.17 -4.12 16 14 C 0.15 5.74 5.71 86.38 0.49 6.23 16 15 N -0.62 -30.50 2.93 -726.94 -2.13 -32.63 16 16 C 0.18 8.66 9.01 127.77 1.15 9.81 16 17 C -0.26 -13.99 9.67 84.03 0.81 -13.18 16 18 H 0.07 3.72 7.84 -2.91 -0.02 3.70 16 19 C -0.05 -3.01 5.13 84.86 0.44 -2.58 16 20 N -0.94 -54.88 10.59 21.65 0.23 -54.65 16 21 Si 0.97 44.48 29.57 68.60 2.03 46.51 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 25 C -0.11 -1.82 9.67 22.30 0.22 -1.61 16 26 C 0.04 0.76 7.31 22.45 0.16 0.93 16 27 F -0.15 -3.57 17.11 44.97 0.77 -2.80 16 28 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.31 7.67 -2.39 -0.02 0.29 16 30 H 0.07 0.32 7.65 -2.39 -0.02 0.31 16 31 H 0.16 0.94 6.30 -2.91 -0.02 0.92 16 32 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.08 1.25 8.04 -2.38 -0.02 1.23 16 34 H 0.07 1.23 8.04 -2.39 -0.02 1.21 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.41 7.64 8.47 -92.71 -0.79 6.86 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.84 8.03 -2.39 -0.02 1.82 16 43 H 0.06 2.01 7.86 -2.39 -0.02 1.99 16 44 H 0.00 0.24 7.42 -2.39 -0.02 0.22 16 45 H 0.02 0.85 7.19 -2.39 -0.02 0.84 16 46 H 0.03 1.21 7.85 -2.39 -0.02 1.19 16 47 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 48 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -72.72 403.54 4.00 -68.72 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.17 Total: 10.35 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 6.51 Total: 8.53 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -4.47 Total: -106.31 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -1.01 Total: -25.00 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.77 Total: -2.80 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -72.72 4.00 -68.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490225318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.940 kcal (2) G-P(sol) polarization free energy of solvation -72.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds