Wall clock time and date at job start Tue Mar 31 2020 21:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.46872 * 2 1 4 4 C 1.36936 * 120.00051 * 272.27254 * 3 2 1 5 5 H 1.07998 * 120.00454 * 174.08797 * 4 3 2 6 6 C 1.38814 * 119.99714 * 354.08650 * 4 3 2 7 7 N 1.31620 * 120.00336 * 33.57035 * 6 4 3 8 8 Si 1.86799 * 119.99894 * 213.56865 * 6 4 3 9 9 H 1.48499 * 109.47518 * 94.99850 * 8 6 4 10 10 H 1.48498 * 109.47443 * 215.00182 * 8 6 4 11 11 H 1.48502 * 109.47313 * 335.00126 * 8 6 4 12 12 C 1.46503 * 119.99991 * 92.27501 * 3 2 1 13 13 C 1.52994 * 109.47060 * 269.99647 * 12 3 2 14 14 N 1.46503 * 109.47060 * 179.97438 * 13 12 3 15 15 C 1.34779 * 120.00053 * 180.02562 * 14 13 12 16 16 O 1.21282 * 119.99804 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99842 * 179.97438 * 15 14 13 18 18 C 1.52992 * 109.47225 * 274.99954 * 17 15 14 19 19 O 1.42901 * 109.47275 * 35.00321 * 17 15 14 20 20 C 1.42907 * 114.00283 * 53.47509 * 19 17 15 21 21 C 1.50707 * 109.46981 * 154.99700 * 17 15 14 22 22 C 1.38220 * 120.01437 * 237.33011 * 21 17 15 23 23 C 1.38219 * 120.02593 * 180.02562 * 22 21 17 24 24 C 1.38269 * 120.05014 * 0.02562 * 23 22 21 25 25 C 1.38182 * 120.02614 * 0.02562 * 24 23 22 26 26 C 1.38439 * 120.01009 * 57.34818 * 21 17 15 27 27 F 1.35102 * 120.02227 * 0.02562 * 26 21 17 28 28 H 1.08999 * 109.47528 * 299.99832 * 1 2 3 29 29 H 1.08994 * 109.47317 * 59.99891 * 1 2 3 30 30 H 1.08999 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47014 * 240.00082 * 2 1 3 32 32 H 1.09003 * 109.47122 * 119.99874 * 2 1 3 33 33 H 0.96999 * 119.99719 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46794 * 149.99525 * 12 3 2 35 35 H 1.08998 * 109.47010 * 30.00060 * 12 3 2 36 36 H 1.09005 * 109.46957 * 60.00335 * 13 12 3 37 37 H 1.08998 * 109.47546 * 300.00084 * 13 12 3 38 38 H 0.97006 * 119.99530 * 0.02562 * 14 13 12 39 39 H 1.08992 * 109.47047 * 299.99669 * 18 17 15 40 40 H 1.08996 * 109.47295 * 60.00242 * 18 17 15 41 41 H 1.09007 * 109.46951 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.47447 * 183.07530 * 20 19 17 43 43 H 1.09000 * 109.47359 * 303.08541 * 20 19 17 44 44 H 1.09007 * 109.46535 * 63.08261 * 20 19 17 45 45 H 1.07998 * 119.98594 * 0.02562 * 22 21 17 46 46 H 1.08000 * 119.97665 * 180.02562 * 23 22 21 47 47 H 1.08003 * 119.98663 * 179.72091 * 24 23 22 48 48 H 1.07999 * 120.01388 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2021 2.0425 -1.1850 5 1 2.4697 3.0888 -1.1837 6 6 2.0444 1.3679 -2.3879 7 7 1.1496 0.4082 -2.4920 8 14 3.1023 1.8220 -3.8590 9 1 4.2824 0.9225 -3.9167 10 1 2.3071 1.6758 -5.1045 11 1 3.5585 3.2289 -3.7252 12 6 2.3098 2.0551 1.2677 13 6 1.0525 2.7701 1.7663 14 7 1.3439 3.4434 3.0343 15 6 0.3783 4.1417 3.6641 16 8 -0.7317 4.2129 3.1808 17 6 0.6780 4.8338 4.9687 18 6 0.5098 3.8428 6.1222 19 8 2.0211 5.3215 4.9518 20 6 2.3270 6.1432 3.8233 21 6 -0.2730 5.9879 5.1552 22 6 0.2188 7.2673 5.3332 23 6 -0.6532 8.3259 5.5048 24 6 -2.0183 8.1063 5.4990 25 6 -2.5123 6.8280 5.3222 26 6 -1.6397 5.7670 5.1485 27 9 -2.1214 4.5167 4.9754 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.0393 -0.0628 -3.3327 34 1 3.1065 2.7836 1.1171 35 1 2.6260 1.3185 2.0064 36 1 0.2558 2.0415 1.9169 37 1 0.7363 3.5067 1.0276 38 1 2.2319 3.3867 3.4206 39 1 -0.5147 3.4710 6.1352 40 1 1.1977 3.0082 5.9874 41 1 0.7270 4.3434 7.0658 42 1 3.3786 6.4281 3.8556 43 1 2.1286 5.5890 2.9058 44 1 1.7069 7.0393 3.8478 45 1 1.2849 7.4399 5.3383 46 1 -0.2680 9.3253 5.6434 47 1 -2.6987 8.9336 5.6376 48 1 -3.5786 6.6568 5.3173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492961497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:39 Heat of formation + Delta-G solvation = -50.325299 kcal Electronic energy + Delta-G solvation = -30757.786810 eV Core-core repulsion = 26536.493456 eV Total energy + Delta-G solvation = -4221.293354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.77007 -40.86803 -38.78308 -37.50879 -36.43227 -34.37821 -32.95049 -31.46535 -30.96346 -29.94609 -29.58178 -27.65774 -26.57714 -24.87356 -23.95272 -22.94310 -22.48649 -21.40805 -20.47345 -19.83057 -18.05731 -17.79285 -16.77878 -16.73402 -16.20517 -15.74847 -15.50784 -15.43340 -15.08936 -14.89190 -14.79684 -14.50806 -14.15699 -13.75201 -13.43100 -13.40808 -13.04982 -12.79051 -12.66450 -12.52966 -12.28599 -12.23190 -12.15478 -11.92954 -11.90285 -11.63647 -11.45091 -11.23673 -11.10638 -10.78116 -10.55306 -10.39563 -10.36219 -9.92465 -9.78419 -9.46445 -9.38729 -9.10761 -8.78443 -8.62763 -8.21761 -7.04910 -5.88322 -3.05338 0.92377 1.04412 2.66113 3.10369 3.39618 3.41716 3.48304 3.49554 3.54025 4.17230 4.26863 4.48625 4.58007 4.69294 4.73230 4.84453 5.05047 5.17761 5.19489 5.22143 5.24888 5.40371 5.45080 5.54001 5.58883 5.60892 5.79579 5.82325 5.87513 5.90540 5.96526 6.06521 6.16935 6.22075 6.50998 6.61021 6.62920 6.67530 6.70657 6.86762 6.93178 7.08893 7.13898 7.69349 7.71012 7.77533 8.07940 8.28220 8.37787 9.18418 9.82812 10.27325 11.17979 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.002829 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.305075 B = 9896.704278 C =10164.713155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 N -0.593 5.593 4 C -0.263 4.263 5 H 0.077 0.923 6 C 0.009 3.991 7 N -0.880 5.880 8 Si 0.882 3.118 9 H -0.288 1.288 10 H -0.294 1.294 11 H -0.281 1.281 12 C 0.147 3.853 13 C 0.089 3.911 14 N -0.716 5.716 15 C 0.487 3.513 16 O -0.519 6.519 17 C 0.147 3.853 18 C -0.138 4.138 19 O -0.362 6.362 20 C -0.003 4.003 21 C -0.146 4.146 22 C -0.083 4.083 23 C -0.142 4.142 24 C -0.086 4.086 25 C -0.165 4.165 26 C 0.147 3.853 27 F -0.119 7.119 28 H 0.013 0.987 29 H 0.085 0.915 30 H 0.021 0.979 31 H 0.090 0.910 32 H 0.007 0.993 33 H 0.253 0.747 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.400 0.600 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.143 0.857 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 12.825 19.771 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.035 3.965 3 N -0.315 5.315 4 C -0.391 4.391 5 H 0.095 0.905 6 C -0.189 4.189 7 N -0.524 5.524 8 Si 0.711 3.289 9 H -0.216 1.216 10 H -0.222 1.222 11 H -0.206 1.206 12 C 0.018 3.982 13 C -0.036 4.036 14 N -0.368 5.368 15 C 0.270 3.730 16 O -0.395 6.395 17 C 0.104 3.896 18 C -0.195 4.195 19 O -0.281 6.281 20 C -0.099 4.099 21 C -0.147 4.147 22 C -0.100 4.100 23 C -0.160 4.160 24 C -0.104 4.104 25 C -0.183 4.183 26 C 0.127 3.873 27 F -0.097 7.097 28 H 0.032 0.968 29 H 0.104 0.896 30 H 0.040 0.960 31 H 0.108 0.892 32 H 0.025 0.975 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.234 0.766 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.161 0.839 46 H 0.147 0.853 47 H 0.149 0.851 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.627 12.628 19.352 23.165 hybrid contribution 0.446 0.139 -0.993 1.098 sum -1.181 12.767 18.359 22.393 Atomic orbital electron populations 1.22323 0.99233 0.98256 1.00974 1.21081 0.92529 0.84384 0.98550 1.44278 1.75911 1.10876 1.00393 1.19205 1.41682 0.94900 0.83333 0.90473 1.24712 0.98545 0.98400 0.97243 1.70300 1.29685 1.27181 1.25265 0.86554 0.81747 0.78008 0.82562 1.21563 1.22150 1.20595 1.20886 0.93573 0.95116 0.88624 1.22739 1.01792 0.96473 0.82592 1.46223 1.13784 1.52023 1.24744 1.20861 0.85658 0.80244 0.86204 1.90768 1.21902 1.61002 1.65818 1.20496 0.82311 0.91618 0.95165 1.21816 1.03920 0.97750 0.95993 1.87984 1.26455 1.67874 1.45740 1.23363 1.02165 0.95199 0.89198 1.20023 0.92705 0.95875 1.06137 1.21108 1.00970 0.90807 0.97160 1.21136 0.93284 0.99148 1.02400 1.21039 0.95658 0.96077 0.97603 1.21165 1.00195 0.92311 1.04678 1.17369 0.91140 0.80457 0.98310 1.91558 1.88296 1.37931 1.91926 0.96775 0.89593 0.96040 0.89173 0.97486 0.93642 0.93041 0.93785 0.91731 0.91628 0.76588 0.89829 0.90508 0.90396 0.88524 0.92406 0.92412 0.83947 0.85291 0.85111 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.74 37.15 0.36 -3.14 16 2 C 0.16 3.81 5.71 -4.04 -0.02 3.78 16 3 N -0.59 -14.28 2.53 -173.24 -0.44 -14.72 16 4 C -0.26 -7.00 9.65 -15.06 -0.15 -7.14 16 5 H 0.08 2.03 8.01 -52.49 -0.42 1.61 16 6 C 0.01 0.25 4.92 -17.43 -0.09 0.17 16 7 N -0.88 -24.41 8.69 55.49 0.48 -23.92 16 8 Si 0.88 21.17 29.66 -169.99 -5.04 16.12 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.15 2.83 5.82 -4.04 -0.02 2.81 16 13 C 0.09 1.70 6.00 -4.04 -0.02 1.68 16 14 N -0.72 -10.98 4.29 -60.29 -0.26 -11.23 16 15 C 0.49 7.89 5.33 -10.99 -0.06 7.84 16 16 O -0.52 -10.46 13.27 5.56 0.07 -10.39 16 17 C 0.15 1.90 0.80 -92.93 -0.07 1.82 16 18 C -0.14 -1.52 8.64 37.15 0.32 -1.20 16 19 O -0.36 -4.08 9.08 -35.23 -0.32 -4.40 16 20 C 0.00 -0.03 9.46 101.05 0.96 0.92 16 21 C -0.15 -1.87 4.47 -104.55 -0.47 -2.33 16 22 C -0.08 -0.86 7.79 -39.60 -0.31 -1.17 16 23 C -0.14 -1.24 10.04 -39.58 -0.40 -1.64 16 24 C -0.09 -0.77 10.04 -39.59 -0.40 -1.16 16 25 C -0.16 -1.83 10.03 -39.51 -0.40 -2.23 16 26 C 0.15 2.02 6.19 -39.42 -0.24 1.78 16 27 F -0.12 -1.91 12.89 2.25 0.03 -1.88 16 28 H 0.01 0.31 6.42 -51.93 -0.33 -0.03 16 29 H 0.09 2.31 6.49 -51.93 -0.34 1.97 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 2.39 5.74 -51.93 -0.30 2.09 16 32 H 0.01 0.15 7.87 -51.93 -0.41 -0.26 16 33 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.05 0.94 8.04 -51.93 -0.42 0.53 16 35 H 0.04 0.77 7.88 -51.93 -0.41 0.36 16 36 H 0.06 1.37 6.42 -51.93 -0.33 1.04 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.40 5.10 7.71 -40.82 -0.31 4.79 16 39 H 0.08 0.99 6.52 -51.93 -0.34 0.66 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.71 5.99 -51.93 -0.31 0.39 16 44 H 0.06 0.56 4.94 -51.92 -0.26 0.31 16 45 H 0.14 1.26 5.35 -52.49 -0.28 0.98 16 46 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 47 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 48 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -31.26 376.96 -7.78 -39.04 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.98 Total: 4.94 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.01 Total: 0.77 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.22 Total: -49.87 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.25 Total: -14.79 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.03 Total: -1.88 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.04 Total: 16.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.26 -7.78 -39.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492961497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.288 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds