Wall clock time and date at job start Tue Mar 31 2020 21:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.46872 * 2 1 4 4 C 1.36936 * 120.00051 * 272.27254 * 3 2 1 5 5 H 1.07998 * 120.00454 * 174.08797 * 4 3 2 6 6 C 1.38814 * 119.99714 * 354.08650 * 4 3 2 7 7 N 1.31620 * 120.00336 * 33.57035 * 6 4 3 8 8 Si 1.86799 * 119.99894 * 213.56865 * 6 4 3 9 9 H 1.48499 * 109.47518 * 94.99850 * 8 6 4 10 10 H 1.48498 * 109.47443 * 215.00182 * 8 6 4 11 11 H 1.48502 * 109.47313 * 335.00126 * 8 6 4 12 12 C 1.46503 * 119.99991 * 92.27501 * 3 2 1 13 13 C 1.52994 * 109.47060 * 269.99647 * 12 3 2 14 14 N 1.46503 * 109.47060 * 179.97438 * 13 12 3 15 15 C 1.34779 * 120.00053 * 180.02562 * 14 13 12 16 16 O 1.21282 * 119.99804 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99842 * 179.97438 * 15 14 13 18 18 C 1.52992 * 109.47225 * 274.99954 * 17 15 14 19 19 O 1.42901 * 109.47275 * 35.00321 * 17 15 14 20 20 C 1.42907 * 114.00283 * 53.47509 * 19 17 15 21 21 C 1.50707 * 109.46981 * 154.99700 * 17 15 14 22 22 C 1.38220 * 120.01437 * 237.33011 * 21 17 15 23 23 C 1.38219 * 120.02593 * 180.02562 * 22 21 17 24 24 C 1.38269 * 120.05014 * 0.02562 * 23 22 21 25 25 C 1.38182 * 120.02614 * 0.02562 * 24 23 22 26 26 C 1.38439 * 120.01009 * 57.34818 * 21 17 15 27 27 F 1.35102 * 120.02227 * 0.02562 * 26 21 17 28 28 H 1.08999 * 109.47528 * 299.99832 * 1 2 3 29 29 H 1.08994 * 109.47317 * 59.99891 * 1 2 3 30 30 H 1.08999 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47014 * 240.00082 * 2 1 3 32 32 H 1.09003 * 109.47122 * 119.99874 * 2 1 3 33 33 H 0.96999 * 119.99719 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46794 * 149.99525 * 12 3 2 35 35 H 1.08998 * 109.47010 * 30.00060 * 12 3 2 36 36 H 1.09005 * 109.46957 * 60.00335 * 13 12 3 37 37 H 1.08998 * 109.47546 * 300.00084 * 13 12 3 38 38 H 0.97006 * 119.99530 * 0.02562 * 14 13 12 39 39 H 1.08992 * 109.47047 * 299.99669 * 18 17 15 40 40 H 1.08996 * 109.47295 * 60.00242 * 18 17 15 41 41 H 1.09007 * 109.46951 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.47447 * 183.07530 * 20 19 17 43 43 H 1.09000 * 109.47359 * 303.08541 * 20 19 17 44 44 H 1.09007 * 109.46535 * 63.08261 * 20 19 17 45 45 H 1.07998 * 119.98594 * 0.02562 * 22 21 17 46 46 H 1.08000 * 119.97665 * 180.02562 * 23 22 21 47 47 H 1.08003 * 119.98663 * 179.72091 * 24 23 22 48 48 H 1.07999 * 120.01388 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2021 2.0425 -1.1850 5 1 2.4697 3.0888 -1.1837 6 6 2.0444 1.3679 -2.3879 7 7 1.1496 0.4082 -2.4920 8 14 3.1023 1.8220 -3.8590 9 1 4.2824 0.9225 -3.9167 10 1 2.3071 1.6758 -5.1045 11 1 3.5585 3.2289 -3.7252 12 6 2.3098 2.0551 1.2677 13 6 1.0525 2.7701 1.7663 14 7 1.3439 3.4434 3.0343 15 6 0.3783 4.1417 3.6641 16 8 -0.7317 4.2129 3.1808 17 6 0.6780 4.8338 4.9687 18 6 0.5098 3.8428 6.1222 19 8 2.0211 5.3215 4.9518 20 6 2.3270 6.1432 3.8233 21 6 -0.2730 5.9879 5.1552 22 6 0.2188 7.2673 5.3332 23 6 -0.6532 8.3259 5.5048 24 6 -2.0183 8.1063 5.4990 25 6 -2.5123 6.8280 5.3222 26 6 -1.6397 5.7670 5.1485 27 9 -2.1214 4.5167 4.9754 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.0393 -0.0628 -3.3327 34 1 3.1065 2.7836 1.1171 35 1 2.6260 1.3185 2.0064 36 1 0.2558 2.0415 1.9169 37 1 0.7363 3.5067 1.0276 38 1 2.2319 3.3867 3.4206 39 1 -0.5147 3.4710 6.1352 40 1 1.1977 3.0082 5.9874 41 1 0.7270 4.3434 7.0658 42 1 3.3786 6.4281 3.8556 43 1 2.1286 5.5890 2.9058 44 1 1.7069 7.0393 3.8478 45 1 1.2849 7.4399 5.3383 46 1 -0.2680 9.3253 5.6434 47 1 -2.6987 8.9336 5.6376 48 1 -3.5786 6.6568 5.3173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492961497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:38 Heat of formation + Delta-G solvation = -69.094598 kcal Electronic energy + Delta-G solvation = -30758.600708 eV Core-core repulsion = 26536.493456 eV Total energy + Delta-G solvation = -4222.107252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.81018 -41.93732 -39.81666 -38.51555 -38.18295 -35.91316 -33.87769 -33.35108 -31.80626 -31.52323 -30.66141 -29.34797 -27.41806 -26.32014 -25.40844 -23.83381 -23.76369 -22.77912 -22.23254 -21.09270 -19.15866 -18.77120 -18.63379 -17.70521 -17.19935 -17.03361 -16.79010 -16.58338 -16.46270 -16.00954 -15.83622 -15.81152 -15.55089 -15.17648 -15.06422 -14.46190 -14.40312 -14.01730 -13.89057 -13.79489 -13.53792 -13.37720 -13.33515 -13.31068 -13.09215 -12.90354 -12.76044 -12.69747 -12.41591 -12.31148 -12.25575 -12.11871 -11.81684 -11.64569 -11.37825 -11.32354 -10.63615 -10.24760 -10.09861 -9.94060 -9.60669 -8.99752 -7.91880 -5.09559 0.11023 0.23292 1.40007 1.47739 1.52567 1.59071 1.95097 2.49137 2.55048 2.63502 3.17593 3.28488 3.40159 3.49522 3.78059 3.79350 3.90344 4.11939 4.17759 4.26160 4.35109 4.37715 4.39485 4.46068 4.55061 4.60891 4.63864 4.66243 4.81896 4.84840 4.91427 4.99127 5.03217 5.10594 5.10898 5.16975 5.18095 5.23848 5.30913 5.40228 5.42203 5.63771 5.76643 5.79461 5.92397 6.06498 6.29624 6.46570 7.11408 7.16997 7.88976 8.29218 9.13287 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.002829 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.305075 B = 9896.704278 C =10164.713155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.161 3.839 3 N -0.608 5.608 4 C -0.272 4.272 5 H 0.075 0.925 6 C -0.039 4.039 7 N -0.904 5.904 8 Si 0.944 3.056 9 H -0.288 1.288 10 H -0.302 1.302 11 H -0.273 1.273 12 C 0.150 3.850 13 C 0.113 3.887 14 N -0.703 5.703 15 C 0.484 3.516 16 O -0.563 6.563 17 C 0.156 3.844 18 C -0.137 4.137 19 O -0.354 6.354 20 C -0.007 4.007 21 C -0.165 4.165 22 C -0.087 4.087 23 C -0.133 4.133 24 C -0.080 4.080 25 C -0.176 4.176 26 C 0.108 3.892 27 F -0.144 7.144 28 H 0.016 0.984 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.248 0.752 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.030 0.970 38 H 0.415 0.585 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.034 0.966 44 H 0.064 0.936 45 H 0.160 0.840 46 H 0.165 0.835 47 H 0.165 0.835 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.811 15.024 21.638 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.036 3.964 3 N -0.330 5.330 4 C -0.400 4.400 5 H 0.093 0.907 6 C -0.235 4.235 7 N -0.549 5.549 8 Si 0.773 3.227 9 H -0.215 1.215 10 H -0.230 1.230 11 H -0.198 1.198 12 C 0.022 3.978 13 C -0.014 4.014 14 N -0.356 5.356 15 C 0.269 3.731 16 O -0.441 6.441 17 C 0.113 3.887 18 C -0.194 4.194 19 O -0.273 6.273 20 C -0.103 4.103 21 C -0.167 4.167 22 C -0.105 4.105 23 C -0.151 4.151 24 C -0.098 4.098 25 C -0.194 4.194 26 C 0.088 3.912 27 F -0.122 7.122 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.253 0.747 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.145 0.855 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.177 0.823 46 H 0.183 0.817 47 H 0.183 0.817 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.130 14.848 21.262 25.933 hybrid contribution -0.120 -0.430 -1.514 1.578 sum 0.009 14.418 19.748 24.451 Atomic orbital electron populations 1.22133 0.99396 0.98657 0.99208 1.20970 0.92336 0.84589 0.98464 1.44464 1.76072 1.11105 1.01350 1.19427 1.41099 0.94995 0.84522 0.90706 1.25335 0.99381 0.99160 0.99603 1.70437 1.30603 1.28420 1.25459 0.85597 0.79784 0.77918 0.79393 1.21508 1.22985 1.19836 1.21023 0.93532 0.95839 0.87399 1.22151 1.00826 0.95000 0.83416 1.45981 1.14618 1.51528 1.23458 1.21605 0.84816 0.79571 0.87068 1.90748 1.23790 1.62414 1.67180 1.20359 0.83220 0.91969 0.93154 1.21837 1.03342 0.97901 0.96286 1.88002 1.25332 1.67967 1.45952 1.23512 1.04159 0.94824 0.87779 1.20150 0.92281 0.96812 1.07440 1.21390 1.02179 0.90162 0.96750 1.21603 0.93001 1.00279 1.00182 1.21480 0.96590 0.95899 0.95824 1.21444 1.00548 0.92768 1.04680 1.17842 0.92326 0.80282 1.00707 1.91486 1.88639 1.39567 1.92515 0.96472 0.93208 0.94547 0.91816 0.94805 0.94201 0.91667 0.91092 0.94184 0.95112 0.74722 0.91260 0.89598 0.88360 0.85500 0.94746 0.91772 0.82314 0.81726 0.81731 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 9.74 71.98 0.70 -5.75 16 2 C 0.16 7.71 5.71 86.38 0.49 8.20 16 3 N -0.61 -29.25 2.53 -702.02 -1.78 -31.03 16 4 C -0.27 -14.53 9.65 84.03 0.81 -13.72 16 5 H 0.08 3.96 8.01 -2.91 -0.02 3.93 16 6 C -0.04 -2.10 4.92 84.86 0.42 -1.69 16 7 N -0.90 -51.29 8.69 21.65 0.19 -51.10 16 8 Si 0.94 44.09 29.66 68.60 2.03 46.13 16 9 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 C 0.15 5.63 5.82 86.38 0.50 6.13 16 13 C 0.11 4.36 6.00 86.38 0.52 4.88 16 14 N -0.70 -21.41 4.29 -463.06 -1.99 -23.40 16 15 C 0.48 15.92 5.33 87.66 0.47 16.38 16 16 O -0.56 -23.75 13.27 -3.04 -0.04 -23.79 16 17 C 0.16 3.91 0.80 -12.29 -0.01 3.90 16 18 C -0.14 -2.92 8.64 71.98 0.62 -2.30 16 19 O -0.35 -7.22 9.08 -148.98 -1.35 -8.57 16 20 C -0.01 -0.13 9.46 113.37 1.07 0.94 16 21 C -0.17 -4.11 4.47 -19.82 -0.09 -4.20 16 22 C -0.09 -1.60 7.79 22.26 0.17 -1.43 16 23 C -0.13 -1.87 10.04 22.27 0.22 -1.65 16 24 C -0.08 -1.21 10.04 22.26 0.22 -0.99 16 25 C -0.18 -3.80 10.03 22.31 0.22 -3.57 16 26 C 0.11 3.02 6.19 22.37 0.14 3.16 16 27 F -0.14 -4.89 12.89 44.97 0.58 -4.31 16 28 H 0.02 0.77 6.42 -2.39 -0.02 0.75 16 29 H 0.05 2.75 6.49 -2.39 -0.02 2.74 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 3.41 5.74 -2.39 -0.01 3.40 16 32 H 0.03 1.42 7.87 -2.39 -0.02 1.40 16 33 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 34 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 35 H 0.07 2.31 7.88 -2.39 -0.02 2.30 16 36 H 0.04 1.75 6.42 -2.38 -0.02 1.73 16 37 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.42 9.99 7.71 -92.70 -0.71 9.27 16 39 H 0.07 1.69 6.52 -2.39 -0.02 1.68 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.03 0.80 5.99 -2.39 -0.01 0.78 16 44 H 0.06 1.10 4.94 -2.38 -0.01 1.08 16 45 H 0.16 2.29 5.35 -2.91 -0.02 2.28 16 46 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 47 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 48 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -70.72 376.96 4.41 -66.31 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.27 Total: 21.47 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 6.49 Total: 8.29 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -3.58 Total: -105.52 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.39 Total: -32.36 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.58 Total: -4.31 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.13 kcal Total: -70.72 4.41 -66.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492961497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.784 kcal (2) G-P(sol) polarization free energy of solvation -70.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds