Wall clock time and date at job start Tue Mar 31 2020 20:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47054 * 2 1 4 4 C 1.53005 * 109.46797 * 240.00674 * 2 1 3 5 5 N 1.46503 * 109.47129 * 184.99989 * 4 2 1 6 6 C 1.46499 * 119.99978 * 269.72453 * 5 4 2 7 7 C 1.36939 * 119.99922 * 89.99236 * 5 4 2 8 8 H 1.08002 * 120.00365 * 342.71157 * 7 5 4 9 9 C 1.38816 * 119.99872 * 162.70845 * 7 5 4 10 10 N 1.31620 * 119.99703 * 345.44197 * 9 7 5 11 11 Si 1.86799 * 120.00064 * 165.44166 * 9 7 5 12 12 H 1.48499 * 109.46835 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47196 * 120.00047 * 11 9 7 14 14 H 1.48496 * 109.46925 * 240.00214 * 11 9 7 15 15 N 1.46493 * 109.47317 * 120.00575 * 2 1 3 16 16 C 1.34781 * 119.99905 * 274.99989 * 15 2 1 17 17 O 1.21278 * 120.00082 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99943 * 180.02562 * 16 15 2 19 19 C 1.52999 * 109.47113 * 179.97438 * 18 16 15 20 20 C 1.52995 * 109.47283 * 179.97438 * 19 18 16 21 21 O 1.42898 * 109.47271 * 179.97438 * 20 19 18 22 22 C 1.35959 * 117.00236 * 180.02562 * 21 20 19 23 23 C 1.38667 * 120.06079 * 359.97438 * 22 21 20 24 24 C 1.38181 * 119.96898 * 179.97438 * 23 22 21 25 25 C 1.38261 * 120.09488 * 0.02562 * 24 23 22 26 26 C 1.38257 * 120.12835 * 0.02562 * 25 24 23 27 27 C 1.38340 * 120.02609 * 359.69481 * 26 25 24 28 28 F 1.35100 * 120.04660 * 180.27750 * 27 26 25 29 29 H 1.09002 * 109.47147 * 299.99770 * 1 2 3 30 30 H 1.08997 * 109.47591 * 59.99720 * 1 2 3 31 31 H 1.08999 * 109.47386 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47600 * 64.99472 * 4 2 1 33 33 H 1.09001 * 109.46815 * 304.99464 * 4 2 1 34 34 H 1.09001 * 109.46994 * 265.36631 * 6 5 4 35 35 H 1.09005 * 109.46793 * 25.36117 * 6 5 4 36 36 H 1.08997 * 109.47032 * 145.36371 * 6 5 4 37 37 H 0.97002 * 119.99714 * 180.02562 * 10 9 7 38 38 H 0.97006 * 120.00123 * 94.99624 * 15 2 1 39 39 H 1.09004 * 109.46705 * 299.99553 * 18 16 15 40 40 H 1.08999 * 109.47680 * 59.99519 * 18 16 15 41 41 H 1.09006 * 109.46798 * 299.99908 * 19 18 16 42 42 H 1.08999 * 109.47222 * 59.99260 * 19 18 16 43 43 H 1.09006 * 109.47202 * 299.99751 * 20 19 18 44 44 H 1.08999 * 109.47522 * 59.99534 * 20 19 18 45 45 H 1.08000 * 120.01500 * 359.95099 * 23 22 21 46 46 H 1.07994 * 119.95245 * 180.02562 * 24 23 22 47 47 H 1.07998 * 119.93504 * 179.97438 * 25 24 23 48 48 H 1.07995 * 119.98709 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 3.5000 -0.8263 -1.1908 6 6 4.3342 0.2312 -1.7668 7 6 4.0849 -1.9158 -0.6025 8 1 3.5078 -2.5498 0.0544 9 6 5.4196 -2.2055 -0.8506 10 7 6.0439 -1.6241 -1.8529 11 14 6.3296 -3.4205 0.2381 12 1 5.4102 -3.9303 1.2869 13 1 6.8181 -4.5547 -0.5867 14 1 7.4840 -2.7418 0.8798 15 7 2.0183 -0.6907 1.1960 16 6 2.1471 -0.0184 2.3571 17 8 1.8591 1.1584 2.4116 18 6 2.6500 -0.7288 3.5873 19 6 2.7020 0.2543 4.7585 20 6 3.2119 -0.4670 6.0076 21 8 3.2611 0.4514 7.1013 22 6 3.6963 -0.0328 8.2949 23 6 4.0677 -1.3637 8.4107 24 6 4.5104 -1.8537 9.6246 25 6 4.5831 -1.0189 10.7243 26 6 4.2128 0.3086 10.6135 27 6 3.7744 0.8060 9.3994 28 9 3.4177 2.1044 9.2893 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7515 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 4.6101 -0.0383 -2.7862 35 1 3.7774 1.1683 -1.7768 36 1 5.2357 0.3506 -1.1658 37 1 6.9765 -1.8268 -2.0264 38 1 2.2490 -1.6319 1.1524 39 1 1.9777 -1.5511 3.8323 40 1 3.6493 -1.1206 3.3977 41 1 3.3744 1.0764 4.5132 42 1 1.7029 0.6466 4.9482 43 1 2.5391 -1.2888 6.2528 44 1 4.2110 -0.8595 5.8182 45 1 4.0107 -2.0172 7.5527 46 1 4.7999 -2.8902 9.7144 47 1 4.9290 -1.4046 11.6718 48 1 4.2708 0.9587 11.4739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498454365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:06 Heat of formation + Delta-G solvation = -80.288313 kcal Electronic energy + Delta-G solvation = -28851.801377 eV Core-core repulsion = 24629.208730 eV Total energy + Delta-G solvation = -4222.592648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.96807 -40.29778 -39.37374 -37.81686 -36.48505 -34.17015 -33.72555 -31.44804 -31.03137 -30.38528 -29.92338 -27.21768 -26.20768 -25.66609 -23.71910 -22.76763 -22.09047 -21.43090 -20.20723 -19.79666 -18.66578 -17.48385 -17.02826 -16.79542 -16.71607 -16.22615 -15.75840 -15.58968 -15.25917 -15.11328 -14.82882 -14.69284 -14.22787 -13.85482 -13.53529 -13.38554 -13.07391 -13.01456 -12.95724 -12.54577 -12.35479 -12.12878 -12.03856 -11.92237 -11.69605 -11.61177 -11.45854 -11.17091 -11.07341 -10.92654 -10.88355 -10.73085 -10.42235 -10.32579 -10.04923 -9.91968 -9.36230 -9.29691 -8.60468 -8.49842 -8.43500 -6.86247 -5.79334 -3.21080 0.77714 0.92846 2.74025 3.12341 3.24186 3.29557 3.32795 3.38655 3.76059 3.96137 4.37079 4.40582 4.47998 4.74563 4.76357 4.84456 4.87578 4.94729 5.08333 5.25171 5.26966 5.30995 5.40168 5.44598 5.58385 5.62639 5.65540 5.71526 5.82261 5.83650 5.91943 6.02862 6.03529 6.12136 6.17063 6.19502 6.35739 6.44065 6.44290 6.74656 6.80495 7.04808 7.13018 7.40588 7.59881 7.76183 8.11851 8.29199 8.76663 9.15327 9.80106 10.28430 11.25615 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011953 B = 0.002462 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.969850 B =11369.103446 C =12977.133784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.601 5.601 6 C 0.165 3.835 7 C -0.249 4.249 8 H 0.067 0.933 9 C -0.001 4.001 10 N -0.905 5.905 11 Si 0.900 3.100 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.290 1.290 15 N -0.695 5.695 16 C 0.514 3.486 17 O -0.558 6.558 18 C -0.139 4.139 19 C -0.101 4.101 20 C 0.058 3.942 21 O -0.304 6.304 22 C 0.103 3.897 23 C -0.184 4.184 24 C -0.089 4.089 25 C -0.134 4.134 26 C -0.117 4.117 27 C 0.065 3.935 28 F -0.132 7.132 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.026 0.974 35 H -0.005 1.005 36 H 0.048 0.952 37 H 0.252 0.748 38 H 0.403 0.597 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.140 0.860 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 -1.539 20.204 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.324 5.324 6 C 0.021 3.979 7 C -0.378 4.378 8 H 0.085 0.915 9 C -0.199 4.199 10 N -0.550 5.550 11 Si 0.730 3.270 12 H -0.204 1.204 13 H -0.218 1.218 14 H -0.217 1.217 15 N -0.346 5.346 16 C 0.300 3.700 17 O -0.437 6.437 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.017 4.017 21 O -0.218 6.218 22 C 0.057 3.943 23 C -0.203 4.203 24 C -0.107 4.107 25 C -0.152 4.152 26 C -0.136 4.136 27 C 0.045 3.955 28 F -0.111 7.111 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.239 0.761 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.157 0.843 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.363 -0.481 20.061 21.052 hybrid contribution 0.819 -1.175 0.394 1.485 sum -5.545 -1.656 20.455 21.258 Atomic orbital electron populations 1.22120 0.96593 1.01354 1.01645 1.21854 0.92138 0.98323 0.86755 0.90527 1.21048 0.85998 0.98213 0.93424 1.43895 0.98933 1.21446 1.68091 1.20800 0.93069 0.86079 0.97992 1.19074 0.94088 1.03983 1.20677 0.91481 1.24919 0.98199 0.99232 0.97549 1.70115 1.10881 1.45837 1.28199 0.86266 0.80060 0.80582 0.80070 1.20402 1.21773 1.21667 1.45930 1.65405 1.14360 1.08878 1.20299 0.77697 0.87240 0.84765 1.90656 1.51469 1.16098 1.85491 1.21515 1.03917 0.99212 0.93309 1.21201 1.03778 0.98558 0.90310 1.22990 1.01501 0.92059 0.85150 1.86156 1.80338 1.39164 1.16118 1.19080 0.96881 0.92514 0.85869 1.21261 1.05067 0.93875 1.00104 1.21049 0.97530 1.00226 0.91922 1.20929 1.02103 0.92770 0.99445 1.21035 0.99956 0.96957 0.95678 1.17049 1.06423 0.78915 0.93122 1.91514 1.89804 1.33130 1.96632 0.92915 0.92145 0.92940 0.93014 0.93099 0.95566 0.98609 0.93353 0.93769 0.76117 0.89077 0.88332 0.89827 0.90089 0.91649 0.91441 0.84274 0.85004 0.84895 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 2 C 0.12 2.03 2.88 -67.93 -0.20 1.84 16 3 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 4 C 0.14 2.68 5.30 -4.04 -0.02 2.66 16 5 N -0.60 -14.15 2.83 -181.11 -0.51 -14.66 16 6 C 0.17 4.03 8.97 59.85 0.54 4.57 16 7 C -0.25 -6.19 8.80 -15.06 -0.13 -6.33 16 8 H 0.07 1.55 6.40 -52.49 -0.34 1.21 16 9 C 0.00 -0.02 5.09 -17.43 -0.09 -0.11 16 10 N -0.90 -25.55 10.45 55.49 0.58 -24.97 16 11 Si 0.90 20.50 29.58 -169.99 -5.03 15.47 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 N -0.70 -11.79 4.49 -53.81 -0.24 -12.03 16 16 C 0.51 8.73 7.79 -10.98 -0.09 8.64 16 17 O -0.56 -11.32 15.64 5.56 0.09 -11.23 16 18 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 19 C -0.10 -1.28 4.87 -26.73 -0.13 -1.41 16 20 C 0.06 0.62 4.74 37.15 0.18 0.79 16 21 O -0.30 -4.00 10.00 -19.61 -0.20 -4.19 16 22 C 0.10 1.21 6.69 -39.18 -0.26 0.95 16 23 C -0.18 -1.69 9.04 -39.44 -0.36 -2.04 16 24 C -0.09 -0.66 10.04 -39.59 -0.40 -1.06 16 25 C -0.13 -0.95 10.04 -39.57 -0.40 -1.35 16 26 C -0.12 -1.01 10.02 -39.54 -0.40 -1.40 16 27 C 0.06 0.75 7.31 -39.30 -0.29 0.46 16 28 F -0.13 -1.76 17.11 2.25 0.04 -1.72 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 34 H 0.03 0.68 7.51 -51.93 -0.39 0.29 16 35 H 0.00 -0.10 8.04 -51.93 -0.42 -0.52 16 36 H 0.05 1.29 6.95 -51.93 -0.36 0.93 16 37 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.40 6.58 6.58 -40.82 -0.27 6.31 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 43 H 0.07 0.56 7.66 -51.93 -0.40 0.16 16 44 H 0.07 0.65 7.66 -51.93 -0.40 0.25 16 45 H 0.14 1.05 6.30 -52.49 -0.33 0.72 16 46 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 48 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -31.92 398.39 -8.60 -40.52 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.49 Total: 4.44 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -1.84 Total: 2.37 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.17 Total: -51.65 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.11 Total: -15.43 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.92 -8.60 -40.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498454365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.766 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds