Wall clock time and date at job start Tue Mar 31 2020 20:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47054 * 2 1 4 4 C 1.53005 * 109.46797 * 240.00674 * 2 1 3 5 5 N 1.46503 * 109.47129 * 184.99989 * 4 2 1 6 6 C 1.46499 * 119.99978 * 269.72453 * 5 4 2 7 7 C 1.36939 * 119.99922 * 89.99236 * 5 4 2 8 8 H 1.08002 * 120.00365 * 342.71157 * 7 5 4 9 9 C 1.38816 * 119.99872 * 162.70845 * 7 5 4 10 10 N 1.31620 * 119.99703 * 345.44197 * 9 7 5 11 11 Si 1.86799 * 120.00064 * 165.44166 * 9 7 5 12 12 H 1.48499 * 109.46835 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47196 * 120.00047 * 11 9 7 14 14 H 1.48496 * 109.46925 * 240.00214 * 11 9 7 15 15 N 1.46493 * 109.47317 * 120.00575 * 2 1 3 16 16 C 1.34781 * 119.99905 * 274.99989 * 15 2 1 17 17 O 1.21278 * 120.00082 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99943 * 180.02562 * 16 15 2 19 19 C 1.52999 * 109.47113 * 179.97438 * 18 16 15 20 20 C 1.52995 * 109.47283 * 179.97438 * 19 18 16 21 21 O 1.42898 * 109.47271 * 179.97438 * 20 19 18 22 22 C 1.35959 * 117.00236 * 180.02562 * 21 20 19 23 23 C 1.38667 * 120.06079 * 359.97438 * 22 21 20 24 24 C 1.38181 * 119.96898 * 179.97438 * 23 22 21 25 25 C 1.38261 * 120.09488 * 0.02562 * 24 23 22 26 26 C 1.38257 * 120.12835 * 0.02562 * 25 24 23 27 27 C 1.38340 * 120.02609 * 359.69481 * 26 25 24 28 28 F 1.35100 * 120.04660 * 180.27750 * 27 26 25 29 29 H 1.09002 * 109.47147 * 299.99770 * 1 2 3 30 30 H 1.08997 * 109.47591 * 59.99720 * 1 2 3 31 31 H 1.08999 * 109.47386 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47600 * 64.99472 * 4 2 1 33 33 H 1.09001 * 109.46815 * 304.99464 * 4 2 1 34 34 H 1.09001 * 109.46994 * 265.36631 * 6 5 4 35 35 H 1.09005 * 109.46793 * 25.36117 * 6 5 4 36 36 H 1.08997 * 109.47032 * 145.36371 * 6 5 4 37 37 H 0.97002 * 119.99714 * 180.02562 * 10 9 7 38 38 H 0.97006 * 120.00123 * 94.99624 * 15 2 1 39 39 H 1.09004 * 109.46705 * 299.99553 * 18 16 15 40 40 H 1.08999 * 109.47680 * 59.99519 * 18 16 15 41 41 H 1.09006 * 109.46798 * 299.99908 * 19 18 16 42 42 H 1.08999 * 109.47222 * 59.99260 * 19 18 16 43 43 H 1.09006 * 109.47202 * 299.99751 * 20 19 18 44 44 H 1.08999 * 109.47522 * 59.99534 * 20 19 18 45 45 H 1.08000 * 120.01500 * 359.95099 * 23 22 21 46 46 H 1.07994 * 119.95245 * 180.02562 * 24 23 22 47 47 H 1.07998 * 119.93504 * 179.97438 * 25 24 23 48 48 H 1.07995 * 119.98709 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 3.5000 -0.8263 -1.1908 6 6 4.3342 0.2312 -1.7668 7 6 4.0849 -1.9158 -0.6025 8 1 3.5078 -2.5498 0.0544 9 6 5.4196 -2.2055 -0.8506 10 7 6.0439 -1.6241 -1.8529 11 14 6.3296 -3.4205 0.2381 12 1 5.4102 -3.9303 1.2869 13 1 6.8181 -4.5547 -0.5867 14 1 7.4840 -2.7418 0.8798 15 7 2.0183 -0.6907 1.1960 16 6 2.1471 -0.0184 2.3571 17 8 1.8591 1.1584 2.4116 18 6 2.6500 -0.7288 3.5873 19 6 2.7020 0.2543 4.7585 20 6 3.2119 -0.4670 6.0076 21 8 3.2611 0.4514 7.1013 22 6 3.6963 -0.0328 8.2949 23 6 4.0677 -1.3637 8.4107 24 6 4.5104 -1.8537 9.6246 25 6 4.5831 -1.0189 10.7243 26 6 4.2128 0.3086 10.6135 27 6 3.7744 0.8060 9.3994 28 9 3.4177 2.1044 9.2893 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7515 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 4.6101 -0.0383 -2.7862 35 1 3.7774 1.1683 -1.7768 36 1 5.2357 0.3506 -1.1658 37 1 6.9765 -1.8268 -2.0264 38 1 2.2490 -1.6319 1.1524 39 1 1.9777 -1.5511 3.8323 40 1 3.6493 -1.1206 3.3977 41 1 3.3744 1.0764 4.5132 42 1 1.7029 0.6466 4.9482 43 1 2.5391 -1.2888 6.2528 44 1 4.2110 -0.8595 5.8182 45 1 4.0107 -2.0172 7.5527 46 1 4.7999 -2.8902 9.7144 47 1 4.9290 -1.4046 11.6718 48 1 4.2708 0.9587 11.4739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498454365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:05 Heat of formation + Delta-G solvation = -99.006648 kcal Electronic energy + Delta-G solvation = -28852.613065 eV Core-core repulsion = 24629.208730 eV Total energy + Delta-G solvation = -4223.404336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.84963 -41.09661 -40.69443 -38.56880 -38.08414 -35.77434 -34.83502 -33.14560 -31.76871 -31.66536 -30.78760 -28.19096 -28.04084 -27.36949 -24.60675 -23.61340 -23.39326 -22.57698 -21.57743 -21.17801 -19.46445 -18.80191 -18.22579 -17.77815 -17.59339 -17.43187 -16.99410 -16.93844 -16.63793 -16.01896 -15.90749 -15.55492 -15.41559 -15.13708 -14.98652 -14.68528 -14.54041 -14.35230 -13.84297 -13.75798 -13.48997 -13.26463 -13.17311 -13.03326 -12.81578 -12.78193 -12.67846 -12.52918 -12.42739 -12.33724 -12.17948 -11.96084 -11.95272 -11.85475 -11.73809 -11.64041 -10.75633 -10.57796 -9.95128 -9.84646 -9.23597 -8.79661 -7.76712 -5.20118 0.12004 0.26289 1.50412 1.51515 1.61187 1.79524 1.93236 2.53452 2.56997 2.60502 3.23962 3.38147 3.65062 3.71717 3.80359 3.87145 3.90727 4.03830 4.12389 4.19317 4.31835 4.33019 4.37987 4.40805 4.44417 4.53321 4.58868 4.67699 4.76383 4.83895 4.90136 4.98260 5.00798 5.02293 5.09679 5.17765 5.19002 5.25863 5.32452 5.42760 5.45726 5.61737 5.71528 5.71906 5.79068 6.29495 6.33282 6.77913 7.16824 7.44975 7.90152 8.35975 9.28326 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011953 B = 0.002462 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.969850 B =11369.103446 C =12977.133784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.123 3.877 3 H 0.045 0.955 4 C 0.142 3.858 5 N -0.616 5.616 6 C 0.181 3.819 7 C -0.239 4.239 8 H 0.091 0.909 9 C -0.066 4.066 10 N -0.947 5.947 11 Si 0.961 3.039 12 H -0.245 1.245 13 H -0.301 1.301 14 H -0.304 1.304 15 N -0.695 5.695 16 C 0.506 3.494 17 O -0.598 6.598 18 C -0.129 4.129 19 C -0.095 4.095 20 C 0.061 3.939 21 O -0.336 6.336 22 C 0.076 3.924 23 C -0.188 4.188 24 C -0.084 4.084 25 C -0.127 4.127 26 C -0.117 4.117 27 C 0.026 3.974 28 F -0.154 7.154 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.002 0.998 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.242 0.758 38 H 0.408 0.592 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.156 0.844 46 H 0.164 0.836 47 H 0.167 0.833 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 -4.575 22.532 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 H 0.063 0.937 4 C 0.015 3.985 5 N -0.338 5.338 6 C 0.036 3.964 7 C -0.368 4.368 8 H 0.109 0.891 9 C -0.260 4.260 10 N -0.595 5.595 11 Si 0.790 3.210 12 H -0.168 1.168 13 H -0.229 1.229 14 H -0.232 1.232 15 N -0.346 5.346 16 C 0.293 3.707 17 O -0.481 6.481 18 C -0.169 4.169 19 C -0.133 4.133 20 C -0.013 4.013 21 O -0.250 6.250 22 C 0.030 3.970 23 C -0.207 4.207 24 C -0.102 4.102 25 C -0.145 4.145 26 C -0.136 4.136 27 C 0.006 3.994 28 F -0.133 7.133 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.021 0.979 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.052 0.948 38 H 0.245 0.755 39 H 0.148 0.852 40 H 0.126 0.874 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.174 0.826 46 H 0.182 0.818 47 H 0.184 0.816 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.388 -3.544 22.415 23.866 hybrid contribution 1.067 -0.209 -0.309 1.130 sum -6.322 -3.753 22.106 23.296 Atomic orbital electron populations 1.22001 0.93789 1.02723 1.01990 1.21630 0.94187 0.96271 0.86336 0.93711 1.21229 0.83257 0.99419 0.94562 1.44146 1.00867 1.20873 1.67957 1.20478 0.92492 0.87434 0.96037 1.19589 0.94101 1.03496 1.19662 0.89135 1.25746 0.99511 1.01710 0.99032 1.70301 1.10513 1.48267 1.30425 0.85278 0.78786 0.77978 0.78964 1.16825 1.22924 1.23159 1.45955 1.65295 1.14513 1.08797 1.21062 0.76856 0.86913 0.85824 1.90641 1.53201 1.18043 1.86180 1.21510 1.04996 0.99526 0.90841 1.21081 1.02367 0.98106 0.91765 1.22996 1.02701 0.91880 0.83722 1.86094 1.81122 1.40655 1.17173 1.19382 0.98444 0.93833 0.85329 1.21538 1.04666 0.92852 1.01599 1.21502 0.95875 1.01740 0.91103 1.21384 1.00423 0.91845 1.00840 1.21354 0.99057 0.98129 0.95062 1.17592 1.08672 0.78427 0.94699 1.91444 1.90350 1.34652 1.96852 0.93864 0.90562 0.90975 0.91952 0.91557 0.97947 0.96576 0.96486 0.94836 0.75496 0.85214 0.87422 0.92863 0.91412 0.88970 0.90238 0.82619 0.81832 0.81556 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.48 71.98 0.68 -3.17 16 2 C 0.12 4.13 2.88 44.99 0.13 4.26 16 3 H 0.04 1.80 7.58 -2.39 -0.02 1.78 16 4 C 0.14 5.11 5.30 86.38 0.46 5.56 16 5 N -0.62 -28.55 2.83 -726.92 -2.05 -30.61 16 6 C 0.18 9.02 8.97 127.77 1.15 10.17 16 7 C -0.24 -11.55 8.80 84.03 0.74 -10.81 16 8 H 0.09 3.88 6.40 -2.91 -0.02 3.86 16 9 C -0.07 -3.48 5.09 84.86 0.43 -3.05 16 10 N -0.95 -54.82 10.45 21.65 0.23 -54.59 16 11 Si 0.96 41.58 29.58 68.60 2.03 43.61 16 12 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 13 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 14 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 15 N -0.70 -22.34 4.49 -442.54 -1.99 -24.32 16 16 C 0.51 16.72 7.79 87.66 0.68 17.41 16 17 O -0.60 -24.71 15.64 -3.02 -0.05 -24.76 16 18 C -0.13 -3.01 5.70 29.85 0.17 -2.84 16 19 C -0.09 -2.40 4.87 30.59 0.15 -2.25 16 20 C 0.06 1.23 4.74 71.98 0.34 1.57 16 21 O -0.34 -8.96 10.00 -93.08 -0.93 -9.90 16 22 C 0.08 1.76 6.69 22.53 0.15 1.91 16 23 C -0.19 -3.00 9.04 22.36 0.20 -2.80 16 24 C -0.08 -0.95 10.04 22.26 0.22 -0.73 16 25 C -0.13 -1.38 10.04 22.28 0.22 -1.16 16 26 C -0.12 -1.84 10.02 22.30 0.22 -1.62 16 27 C 0.03 0.60 7.31 22.45 0.16 0.77 16 28 F -0.15 -4.37 17.11 44.97 0.77 -3.60 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 33 H 0.07 2.21 8.04 -2.39 -0.02 2.19 16 34 H 0.00 0.12 7.51 -2.39 -0.02 0.10 16 35 H 0.02 0.71 8.04 -2.38 -0.02 0.69 16 36 H 0.02 0.92 6.95 -2.39 -0.02 0.90 16 37 H 0.24 13.84 8.31 -92.71 -0.77 13.07 16 38 H 0.41 12.12 6.58 -92.70 -0.61 11.51 16 39 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.05 1.64 8.10 -2.38 -0.02 1.62 16 42 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 43 H 0.09 1.32 7.66 -2.38 -0.02 1.31 16 44 H 0.08 1.37 7.66 -2.39 -0.02 1.35 16 45 H 0.16 1.83 6.30 -2.91 -0.02 1.82 16 46 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 47 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 48 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -73.39 398.39 4.48 -68.91 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.35 Total: 22.03 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 6.12 Total: 13.23 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -3.81 Total: -109.52 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.98 Total: -34.65 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.77 Total: -3.60 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -73.39 4.48 -68.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498454365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.095 kcal (2) G-P(sol) polarization free energy of solvation -73.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds