Wall clock time and date at job start Tue Mar 31 2020 20:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47063 * 2 1 4 4 C 1.53000 * 109.46798 * 119.99672 * 2 1 3 5 5 N 1.46504 * 109.46948 * 175.00044 * 4 2 1 6 6 C 1.46504 * 120.00051 * 270.00455 * 5 4 2 7 7 C 1.36941 * 120.00009 * 89.99503 * 5 4 2 8 8 H 1.07997 * 119.99800 * 20.39191 * 7 5 4 9 9 C 1.38807 * 120.00107 * 200.38098 * 7 5 4 10 10 N 1.31620 * 120.00038 * 15.00994 * 9 7 5 11 11 Si 1.86800 * 120.00102 * 195.00803 * 9 7 5 12 12 H 1.48499 * 109.47190 * 85.00449 * 11 9 7 13 13 H 1.48503 * 109.47220 * 205.00626 * 11 9 7 14 14 H 1.48497 * 109.47093 * 325.00247 * 11 9 7 15 15 N 1.46499 * 109.47003 * 239.99552 * 2 1 3 16 16 C 1.34777 * 119.99670 * 84.99927 * 15 2 1 17 17 O 1.21280 * 120.00391 * 0.02562 * 16 15 2 18 18 C 1.50702 * 119.99951 * 179.97438 * 16 15 2 19 19 C 1.52999 * 109.47236 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47108 * 180.02562 * 19 18 16 21 21 O 1.42901 * 109.47217 * 180.02562 * 20 19 18 22 22 C 1.35956 * 117.00145 * 180.02562 * 21 20 19 23 23 C 1.38663 * 120.05890 * 359.97234 * 22 21 20 24 24 C 1.38185 * 119.96508 * 180.02562 * 23 22 21 25 25 C 1.38260 * 120.09545 * 359.97438 * 24 23 22 26 26 C 1.38260 * 120.12808 * 0.02562 * 25 24 23 27 27 C 1.38334 * 120.02677 * 359.97438 * 26 25 24 28 28 F 1.35099 * 120.04505 * 180.02562 * 27 26 25 29 29 H 1.09004 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47306 * 299.99667 * 1 2 3 31 31 H 1.08996 * 109.46983 * 60.00463 * 1 2 3 32 32 H 1.08994 * 109.47520 * 294.99649 * 4 2 1 33 33 H 1.09000 * 109.47171 * 55.00325 * 4 2 1 34 34 H 1.08998 * 109.47257 * 95.12311 * 6 5 4 35 35 H 1.08996 * 109.46572 * 215.12723 * 6 5 4 36 36 H 1.09004 * 109.46847 * 335.12420 * 6 5 4 37 37 H 0.97003 * 120.00042 * 179.97438 * 10 9 7 38 38 H 0.96996 * 120.00075 * 264.99626 * 15 2 1 39 39 H 1.09007 * 109.46482 * 60.00043 * 18 16 15 40 40 H 1.08997 * 109.47132 * 300.00465 * 18 16 15 41 41 H 1.08998 * 109.46831 * 60.00468 * 19 18 16 42 42 H 1.08997 * 109.47402 * 300.00253 * 19 18 16 43 43 H 1.08998 * 109.46972 * 59.99825 * 20 19 18 44 44 H 1.09003 * 109.47370 * 300.00328 * 20 19 18 45 45 H 1.07993 * 120.01854 * 0.04833 * 23 22 21 46 46 H 1.07993 * 119.95076 * 180.28127 * 24 23 22 47 47 H 1.07998 * 119.93442 * 179.97438 * 25 24 23 48 48 H 1.08002 * 119.98739 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5613 7 6 4.2799 0.1650 1.7240 8 1 3.8671 0.8403 2.4588 9 6 5.6009 0.3017 1.3204 10 7 6.0234 -0.3083 0.2333 11 14 6.7791 1.3516 2.3199 12 1 7.3498 0.5399 3.4248 13 1 7.8759 1.8358 1.4437 14 1 6.0482 2.5137 2.8859 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3571 17 8 1.8590 1.1585 -2.4116 18 6 2.6498 -0.7287 -3.5874 19 6 2.7018 0.2545 -4.7586 20 6 3.2117 -0.4668 -6.0078 21 8 3.2607 0.4516 -7.1015 22 6 3.6949 -0.0329 -8.2953 23 6 4.0663 -1.3638 -8.4111 24 6 4.5079 -1.8540 -9.6253 25 6 4.5794 -1.0194 -10.7253 26 6 4.2100 0.3083 -10.6142 27 6 3.7673 0.8045 -9.4012 28 9 3.4058 2.1016 -9.2924 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.7517 -0.1582 2.1370 33 1 1.6053 -1.7197 1.2952 34 1 4.3628 -1.7606 -0.4772 35 1 5.0416 -2.2451 1.0953 36 1 3.4385 -2.8372 0.5975 37 1 6.9465 -0.2125 -0.0490 38 1 2.2491 -1.6318 -1.1525 39 1 1.9775 -1.5511 -3.8324 40 1 3.6491 -1.1205 -3.3978 41 1 3.3743 1.0764 -4.5133 42 1 1.7027 0.6467 -4.9483 43 1 2.5389 -1.2887 -6.2528 44 1 4.2107 -0.8594 -5.8183 45 1 4.0102 -2.0170 -7.5530 46 1 4.7928 -2.8917 -9.7164 47 1 4.9253 -1.4052 -11.6729 48 1 4.2664 0.9581 -11.4750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498454366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:11 Heat of formation + Delta-G solvation = -81.160250 kcal Electronic energy + Delta-G solvation = -28875.619296 eV Core-core repulsion = 24652.988838 eV Total energy + Delta-G solvation = -4222.630458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.92784 -40.25538 -39.29083 -37.77504 -36.43133 -34.11505 -33.65580 -31.32017 -30.99834 -30.39865 -29.92569 -27.16823 -26.20692 -25.61076 -23.67444 -22.73142 -22.04506 -21.34010 -20.19558 -19.74770 -18.61607 -17.40312 -16.89462 -16.80724 -16.66074 -16.40218 -15.68881 -15.46762 -15.22491 -14.94145 -14.73336 -14.63950 -14.17115 -13.85401 -13.48747 -13.33599 -13.15739 -12.97747 -12.87231 -12.46830 -12.29956 -12.14475 -12.02094 -11.85532 -11.63385 -11.47200 -11.38788 -11.12213 -11.07813 -10.85373 -10.78829 -10.66264 -10.55398 -10.22710 -9.98363 -9.84985 -9.27639 -9.26332 -8.60675 -8.45893 -8.34232 -6.80224 -5.75190 -3.17536 0.81045 0.96410 2.79149 3.22832 3.27558 3.38927 3.45590 3.46382 3.81973 4.00128 4.40469 4.50213 4.51282 4.79208 4.81765 4.88646 4.91311 5.00223 5.12258 5.29423 5.32215 5.37279 5.46102 5.47223 5.65593 5.67068 5.72056 5.75282 5.86496 5.87821 5.99327 6.05778 6.09087 6.11596 6.23346 6.26718 6.40623 6.46594 6.52730 6.60876 6.88418 7.09650 7.19835 7.29123 7.60614 7.79271 8.14545 8.35722 8.85191 9.20880 9.84031 10.30784 11.30497 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.002267 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.318035 B =12349.849135 C =13301.734553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.162 3.838 7 C -0.254 4.254 8 H 0.069 0.931 9 C 0.003 3.997 10 N -0.905 5.905 11 Si 0.904 3.096 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.699 5.699 16 C 0.518 3.482 17 O -0.552 6.552 18 C -0.137 4.137 19 C -0.101 4.101 20 C 0.059 3.941 21 O -0.304 6.304 22 C 0.104 3.896 23 C -0.184 4.184 24 C -0.089 4.089 25 C -0.135 4.135 26 C -0.118 4.118 27 C 0.065 3.935 28 F -0.132 7.132 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.031 0.969 35 H 0.043 0.957 36 H -0.005 1.005 37 H 0.251 0.749 38 H 0.394 0.606 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.140 0.860 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 -7.645 -18.436 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.103 0.897 4 C 0.015 3.985 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.384 4.384 8 H 0.087 0.913 9 C -0.195 4.195 10 N -0.551 5.551 11 Si 0.734 3.266 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.348 5.348 16 C 0.304 3.696 17 O -0.430 6.430 18 C -0.177 4.177 19 C -0.139 4.139 20 C -0.016 4.016 21 O -0.217 6.217 22 C 0.057 3.943 23 C -0.203 4.203 24 C -0.107 4.107 25 C -0.153 4.153 26 C -0.136 4.136 27 C 0.045 3.955 28 F -0.111 7.111 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.014 0.986 37 H 0.061 0.939 38 H 0.228 0.772 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.157 0.843 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.580 -6.567 -18.433 20.644 hybrid contribution 0.949 0.133 0.521 1.091 sum -5.631 -6.434 -17.911 19.847 Atomic orbital electron populations 1.22149 0.96962 1.00991 1.01661 1.21849 0.91606 0.99171 0.86503 0.89736 1.21187 0.85707 0.97222 0.94424 1.43925 0.99095 1.20866 1.68089 1.20842 0.94548 0.85085 0.97820 1.19184 0.92901 1.09643 1.16643 0.91328 1.24927 0.98605 0.99460 0.96538 1.70052 1.15901 1.46916 1.22183 0.86282 0.80913 0.80020 0.79381 1.21558 1.21815 1.20598 1.45778 1.66123 1.13634 1.09308 1.20232 0.77488 0.87227 0.84638 1.90663 1.50987 1.15993 1.85374 1.21492 1.03788 0.99078 0.93333 1.21198 1.03735 0.98682 0.90277 1.22983 1.01469 0.91985 0.85118 1.86165 1.80319 1.39172 1.16089 1.19089 0.96804 0.92528 0.85862 1.21253 1.05110 0.93866 1.00085 1.21041 0.97586 1.00198 0.91920 1.20921 1.02196 0.92764 0.99424 1.21033 0.99937 0.96961 0.95705 1.17054 1.06332 0.79003 0.93127 1.91515 1.89659 1.33252 1.96642 0.93263 0.92165 0.93001 0.92340 0.94031 0.95126 0.93834 0.98646 0.93901 0.77162 0.89327 0.88273 0.89724 0.90189 0.91747 0.91402 0.84273 0.85026 0.84924 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.48 37.16 0.35 -2.01 16 2 C 0.12 2.15 2.88 -67.93 -0.20 1.95 16 3 H 0.08 1.92 7.58 -51.93 -0.39 1.53 16 4 C 0.14 2.71 5.33 -4.04 -0.02 2.69 16 5 N -0.60 -14.08 2.78 -181.12 -0.50 -14.58 16 6 C 0.16 3.63 7.60 59.85 0.45 4.09 16 7 C -0.25 -6.83 9.68 -15.06 -0.15 -6.97 16 8 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 9 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 10 N -0.91 -25.62 10.67 55.49 0.59 -25.02 16 11 Si 0.90 22.01 29.58 -169.99 -5.03 16.98 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 N -0.70 -12.19 4.42 -53.81 -0.24 -12.43 16 16 C 0.52 9.38 7.79 -10.98 -0.09 9.29 16 17 O -0.55 -12.14 15.64 5.56 0.09 -12.05 16 18 C -0.14 -1.81 5.70 -27.88 -0.16 -1.97 16 19 C -0.10 -1.37 4.87 -26.73 -0.13 -1.50 16 20 C 0.06 0.66 4.74 37.16 0.18 0.84 16 21 O -0.30 -4.16 10.00 -19.60 -0.20 -4.36 16 22 C 0.10 1.25 6.69 -39.18 -0.26 0.99 16 23 C -0.18 -1.71 9.04 -39.44 -0.36 -2.07 16 24 C -0.09 -0.67 10.04 -39.59 -0.40 -1.07 16 25 C -0.13 -0.98 10.04 -39.57 -0.40 -1.38 16 26 C -0.12 -1.04 10.02 -39.54 -0.40 -1.43 16 27 C 0.06 0.77 7.31 -39.30 -0.29 0.48 16 28 F -0.13 -1.82 17.11 2.25 0.04 -1.78 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.09 8.03 -51.93 -0.42 0.68 16 33 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 34 H 0.03 0.72 6.97 -51.93 -0.36 0.36 16 35 H 0.04 1.09 7.22 -51.93 -0.37 0.71 16 36 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 37 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.39 6.18 7.18 -40.82 -0.29 5.89 16 39 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 40 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 42 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 43 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 44 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 45 H 0.14 1.05 6.30 -52.49 -0.33 0.72 16 46 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 47 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 48 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 399.36 15.07 6.02 6.02 Total: -1.00 -33.23 399.36 -8.72 -41.95 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.55 Total: 3.36 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.94 Total: 1.91 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.15 Total: -52.04 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.11 Total: -16.41 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.23 -8.72 -41.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498454366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.206 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds