Wall clock time and date at job start Tue Mar 31 2020 20:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47063 * 2 1 4 4 C 1.53000 * 109.46798 * 119.99672 * 2 1 3 5 5 N 1.46504 * 109.46948 * 175.00044 * 4 2 1 6 6 C 1.46504 * 120.00051 * 270.00455 * 5 4 2 7 7 C 1.36941 * 120.00009 * 89.99503 * 5 4 2 8 8 H 1.07997 * 119.99800 * 20.39191 * 7 5 4 9 9 C 1.38807 * 120.00107 * 200.38098 * 7 5 4 10 10 N 1.31620 * 120.00038 * 15.00994 * 9 7 5 11 11 Si 1.86800 * 120.00102 * 195.00803 * 9 7 5 12 12 H 1.48499 * 109.47190 * 85.00449 * 11 9 7 13 13 H 1.48503 * 109.47220 * 205.00626 * 11 9 7 14 14 H 1.48497 * 109.47093 * 325.00247 * 11 9 7 15 15 N 1.46499 * 109.47003 * 239.99552 * 2 1 3 16 16 C 1.34777 * 119.99670 * 84.99927 * 15 2 1 17 17 O 1.21280 * 120.00391 * 0.02562 * 16 15 2 18 18 C 1.50702 * 119.99951 * 179.97438 * 16 15 2 19 19 C 1.52999 * 109.47236 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47108 * 180.02562 * 19 18 16 21 21 O 1.42901 * 109.47217 * 180.02562 * 20 19 18 22 22 C 1.35956 * 117.00145 * 180.02562 * 21 20 19 23 23 C 1.38663 * 120.05890 * 359.97234 * 22 21 20 24 24 C 1.38185 * 119.96508 * 180.02562 * 23 22 21 25 25 C 1.38260 * 120.09545 * 359.97438 * 24 23 22 26 26 C 1.38260 * 120.12808 * 0.02562 * 25 24 23 27 27 C 1.38334 * 120.02677 * 359.97438 * 26 25 24 28 28 F 1.35099 * 120.04505 * 180.02562 * 27 26 25 29 29 H 1.09004 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47306 * 299.99667 * 1 2 3 31 31 H 1.08996 * 109.46983 * 60.00463 * 1 2 3 32 32 H 1.08994 * 109.47520 * 294.99649 * 4 2 1 33 33 H 1.09000 * 109.47171 * 55.00325 * 4 2 1 34 34 H 1.08998 * 109.47257 * 95.12311 * 6 5 4 35 35 H 1.08996 * 109.46572 * 215.12723 * 6 5 4 36 36 H 1.09004 * 109.46847 * 335.12420 * 6 5 4 37 37 H 0.97003 * 120.00042 * 179.97438 * 10 9 7 38 38 H 0.96996 * 120.00075 * 264.99626 * 15 2 1 39 39 H 1.09007 * 109.46482 * 60.00043 * 18 16 15 40 40 H 1.08997 * 109.47132 * 300.00465 * 18 16 15 41 41 H 1.08998 * 109.46831 * 60.00468 * 19 18 16 42 42 H 1.08997 * 109.47402 * 300.00253 * 19 18 16 43 43 H 1.08998 * 109.46972 * 59.99825 * 20 19 18 44 44 H 1.09003 * 109.47370 * 300.00328 * 20 19 18 45 45 H 1.07993 * 120.01854 * 0.04833 * 23 22 21 46 46 H 1.07993 * 119.95076 * 180.28127 * 24 23 22 47 47 H 1.07998 * 119.93442 * 179.97438 * 25 24 23 48 48 H 1.08002 * 119.98739 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5613 7 6 4.2799 0.1650 1.7240 8 1 3.8671 0.8403 2.4588 9 6 5.6009 0.3017 1.3204 10 7 6.0234 -0.3083 0.2333 11 14 6.7791 1.3516 2.3199 12 1 7.3498 0.5399 3.4248 13 1 7.8759 1.8358 1.4437 14 1 6.0482 2.5137 2.8859 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3571 17 8 1.8590 1.1585 -2.4116 18 6 2.6498 -0.7287 -3.5874 19 6 2.7018 0.2545 -4.7586 20 6 3.2117 -0.4668 -6.0078 21 8 3.2607 0.4516 -7.1015 22 6 3.6949 -0.0329 -8.2953 23 6 4.0663 -1.3638 -8.4111 24 6 4.5079 -1.8540 -9.6253 25 6 4.5794 -1.0194 -10.7253 26 6 4.2100 0.3083 -10.6142 27 6 3.7673 0.8045 -9.4012 28 9 3.4058 2.1016 -9.2924 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.7517 -0.1582 2.1370 33 1 1.6053 -1.7197 1.2952 34 1 4.3628 -1.7606 -0.4772 35 1 5.0416 -2.2451 1.0953 36 1 3.4385 -2.8372 0.5975 37 1 6.9465 -0.2125 -0.0490 38 1 2.2491 -1.6318 -1.1525 39 1 1.9775 -1.5511 -3.8324 40 1 3.6491 -1.1205 -3.3978 41 1 3.3743 1.0764 -4.5133 42 1 1.7027 0.6467 -4.9483 43 1 2.5389 -1.2887 -6.2528 44 1 4.2107 -0.8594 -5.8183 45 1 4.0102 -2.0170 -7.5530 46 1 4.7928 -2.8917 -9.7164 47 1 4.9253 -1.4052 -11.6729 48 1 4.2664 0.9581 -11.4750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498454366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:10 Heat of formation + Delta-G solvation = -101.485663 kcal Electronic energy + Delta-G solvation = -28876.500672 eV Core-core repulsion = 24652.988838 eV Total energy + Delta-G solvation = -4223.511834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.84824 -41.09391 -40.69163 -38.56210 -38.06300 -35.77714 -34.84614 -33.09679 -31.86969 -31.66030 -30.78957 -28.19593 -27.93164 -27.38952 -24.61627 -23.59150 -23.36676 -22.54326 -21.65347 -21.16101 -19.44655 -18.76667 -18.35092 -17.82809 -17.59239 -17.47475 -17.06905 -16.75644 -16.57112 -16.05221 -15.89277 -15.53834 -15.41094 -15.22842 -15.10836 -14.69629 -14.42751 -14.37685 -13.81766 -13.74424 -13.50553 -13.22348 -13.16526 -13.04727 -12.80581 -12.79057 -12.64906 -12.54412 -12.42874 -12.34933 -12.25746 -12.02842 -11.95072 -11.82347 -11.69984 -11.64670 -10.77567 -10.60811 -9.94234 -9.86829 -9.22911 -8.73942 -7.82393 -5.24374 0.12892 0.27180 1.43615 1.44837 1.51568 1.80110 1.94462 2.49408 2.56799 2.61488 3.24899 3.31061 3.65649 3.73149 3.80565 3.86382 3.91202 4.03440 4.16605 4.20863 4.32704 4.33623 4.38182 4.41545 4.44325 4.55571 4.58714 4.67184 4.77836 4.86458 4.93069 4.99385 5.01654 5.02203 5.10559 5.17020 5.22371 5.26803 5.39150 5.40695 5.43420 5.65461 5.72922 5.76796 5.82338 6.30505 6.34101 6.75926 7.18762 7.46382 7.91832 8.30426 9.19904 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.002267 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.318035 B =12349.849135 C =13301.734553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.121 3.879 3 H 0.031 0.969 4 C 0.143 3.857 5 N -0.612 5.612 6 C 0.173 3.827 7 C -0.258 4.258 8 H 0.064 0.936 9 C -0.050 4.050 10 N -0.927 5.927 11 Si 0.956 3.044 12 H -0.282 1.282 13 H -0.300 1.300 14 H -0.278 1.278 15 N -0.694 5.694 16 C 0.505 3.495 17 O -0.601 6.601 18 C -0.123 4.123 19 C -0.096 4.096 20 C 0.064 3.936 21 O -0.338 6.338 22 C 0.075 3.925 23 C -0.187 4.187 24 C -0.083 4.083 25 C -0.127 4.127 26 C -0.118 4.118 27 C 0.024 3.976 28 F -0.155 7.155 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.015 0.985 35 H 0.010 0.990 36 H 0.040 0.960 37 H 0.244 0.756 38 H 0.406 0.594 39 H 0.135 0.865 40 H 0.105 0.895 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.157 0.843 46 H 0.166 0.834 47 H 0.168 0.832 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.095 -10.915 -19.419 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.049 0.951 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.028 3.972 7 C -0.389 4.389 8 H 0.082 0.918 9 C -0.246 4.246 10 N -0.574 5.574 11 Si 0.786 3.214 12 H -0.209 1.209 13 H -0.227 1.227 14 H -0.203 1.203 15 N -0.344 5.344 16 C 0.293 3.707 17 O -0.483 6.483 18 C -0.163 4.163 19 C -0.134 4.134 20 C -0.010 4.010 21 O -0.253 6.253 22 C 0.029 3.971 23 C -0.206 4.206 24 C -0.101 4.101 25 C -0.145 4.145 26 C -0.136 4.136 27 C 0.005 3.995 28 F -0.134 7.134 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.033 0.967 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.242 0.758 39 H 0.153 0.847 40 H 0.123 0.877 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.097 0.903 45 H 0.175 0.825 46 H 0.184 0.816 47 H 0.185 0.815 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.219 -9.874 -19.399 22.933 hybrid contribution 1.099 1.113 0.806 1.759 sum -6.120 -8.761 -18.593 21.446 Atomic orbital electron populations 1.22007 0.93769 1.02894 1.01692 1.21633 0.93995 0.96271 0.86800 0.95081 1.21357 0.83209 0.99329 0.94503 1.44131 1.00876 1.20462 1.67962 1.20663 0.94322 0.86046 0.96163 1.19439 0.93454 1.09780 1.16210 0.91787 1.25561 1.00095 1.01236 0.97698 1.70183 1.15533 1.48362 1.23292 0.85439 0.78963 0.78849 0.78121 1.20924 1.22681 1.20314 1.45770 1.65677 1.14084 1.08859 1.21125 0.76634 0.86892 0.86027 1.90640 1.53141 1.18312 1.86244 1.21467 1.04828 0.99432 0.90564 1.21078 1.02147 0.98105 0.92085 1.22967 1.02700 0.91800 0.83515 1.86098 1.81182 1.40747 1.17228 1.19409 0.98502 0.93954 0.85228 1.21546 1.04611 0.92745 1.01671 1.21513 0.95790 1.01793 0.91011 1.21392 1.00414 0.91774 1.00882 1.21354 0.99052 0.98195 0.95024 1.17620 1.08677 0.78485 0.94767 1.91442 1.90236 1.34862 1.96872 0.90278 0.90837 0.94347 0.92172 0.90288 0.96657 0.97100 0.94208 0.94671 0.75787 0.84715 0.87677 0.93637 0.91451 0.88598 0.90296 0.82509 0.81646 0.81467 0.82405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 9.48 71.98 0.68 -3.37 16 2 C 0.12 4.40 2.88 44.99 0.13 4.53 16 3 H 0.03 1.46 7.58 -2.39 -0.02 1.44 16 4 C 0.14 5.16 5.33 86.38 0.46 5.62 16 5 N -0.61 -28.35 2.78 -726.93 -2.02 -30.38 16 6 C 0.17 7.54 7.60 127.77 0.97 8.51 16 7 C -0.26 -13.96 9.68 84.03 0.81 -13.15 16 8 H 0.06 3.44 7.86 -2.91 -0.02 3.42 16 9 C -0.05 -2.82 5.06 84.86 0.43 -2.39 16 10 N -0.93 -53.42 10.67 21.65 0.23 -53.18 16 11 Si 0.96 46.00 29.58 68.60 2.03 48.02 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 N -0.69 -23.56 4.42 -442.54 -1.96 -25.52 16 16 C 0.51 18.45 7.79 87.66 0.68 19.13 16 17 O -0.60 -27.80 15.64 -3.03 -0.05 -27.85 16 18 C -0.12 -3.15 5.70 29.85 0.17 -2.98 16 19 C -0.10 -2.70 4.87 30.59 0.15 -2.55 16 20 C 0.06 1.40 4.74 71.98 0.34 1.74 16 21 O -0.34 -9.63 10.00 -93.05 -0.93 -10.56 16 22 C 0.08 1.82 6.69 22.53 0.15 1.97 16 23 C -0.19 -3.10 9.04 22.36 0.20 -2.90 16 24 C -0.08 -0.96 10.04 22.26 0.22 -0.74 16 25 C -0.13 -1.44 10.04 22.28 0.22 -1.21 16 26 C -0.12 -1.94 10.02 22.30 0.22 -1.72 16 27 C 0.02 0.59 7.31 22.45 0.16 0.76 16 28 F -0.16 -4.63 17.11 44.97 0.77 -3.86 16 29 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 2.15 8.03 -2.39 -0.02 2.13 16 33 H 0.08 2.30 7.86 -2.39 -0.02 2.28 16 34 H 0.02 0.71 6.97 -2.39 -0.02 0.69 16 35 H 0.01 0.51 7.22 -2.39 -0.02 0.50 16 36 H 0.04 1.36 7.84 -2.38 -0.02 1.34 16 37 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.41 11.75 7.18 -92.71 -0.67 11.09 16 39 H 0.13 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 42 H 0.07 2.02 8.10 -2.39 -0.02 2.00 16 43 H 0.10 1.45 7.66 -2.39 -0.02 1.43 16 44 H 0.08 1.51 7.66 -2.39 -0.02 1.49 16 45 H 0.16 1.90 6.30 -2.91 -0.02 1.89 16 46 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 47 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 48 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -77.98 399.36 4.38 -73.60 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.29 Total: 18.47 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 6.02 Total: 11.26 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -3.75 Total: -109.08 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.98 Total: -38.41 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.77 Total: -3.86 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -77.98 4.38 -73.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498454366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.886 kcal (2) G-P(sol) polarization free energy of solvation -77.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds